Docker · For researchers

Predicts how small molecules bind to a protein with DiffDock, covering batch docking, pose ranking by confidence and checks on the results; not for binding affinity.

K-Dense-AI/scientific-agent-skills

Drives a self-hosted Open Notebook instance to organize sources into notebooks, chat with documents, generate notes and multi-speaker podcasts, and search across material.

agent-skills-hub/agent-skills-hub

Generate sashimi-style genome visualization plots (coverage, line, heatmap, IGV read-by-read, HiC, circRNA, motif) from BAM/bigWig/depth/HiC inputs.

ygidtu/trackplot

Guides reinforcement-learning post-training of LLMs with slime, which pairs Megatron-LM training with SGLang rollouts, including GRPO runs on GLM, Qwen3 and Llama 3 models.

Orchestra-Research/AI-Research-SKILLs

Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt /…

pedrohcgs/claude-code-my-workflow

A skill your agent uses when asked to install, deploy, run, validate, troubleshoot, or stop NVIDIA Deep Researcher Agent Blueprint infrastructure.

NVIDIA-AI-Blueprints/deep-researcher-agent

Sets up large-scale LLM training with NVIDIA Megatron-Core, choosing tensor, pipeline, data, context and expert parallelism for a given model size and GPU count.

Orchestra-Research/AI-Research-SKILLs

Memory recall and save. An agent skill from dimknaf/braindb.

dimknaf/braindb

Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline.

ClawBio/ClawBio

Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone.

NVIDIA/skills

Run DiffDock molecular docking via NVIDIA NIM to predict small-molecule binding poses against protein targets.

NVIDIA/skills

Deep learning-based variant calling with Google DeepVariant.

FreedomIntelligence/OpenClaw-Medical-Skills

Designs pegRNAs and nicking guides for prime editing (PE) -- choosing the nick/strand, tuning the primer-binding site (PBS) and reverse-transcription template (RTT) as a per-locus panel, selecting…

GPTomics/bioSkills

Runs and configures curated nf-core community Nextflow pipelines (rnaseq, sarek, atacseq, methylseq, ampliseq, taxprofiler, fetchngs) reproducibly, pinning the pipeline revision with -r and…

GPTomics/bioSkills

This skill covers reproducible research pipelines and replication packages.

brycewang-stanford/Auto-Empirical-Research-Skills

This skill should be used when user encounters "paper-search MCP error", "Docker not found", "Docker not running", "paper search not working", or needs help configuring paper search integration.

fcakyon/claude-codex-settings

Implement open science practices for a social science study.

joshzyj/open-scholar-skill

Build, document, test, and validate a journal-ready replication package for social science research.

joshzyj/open-scholar-skill

Guide for setup arXiv paper search MCP server using Docker MCP

NeoLabHQ/context-engineering-kit