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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | 从论文 PDF 文件或论文 PDF URL 生成通俗易懂、图文并茂、带批判性评估的中文 Markdown 解读，并保存到当前项目的 markdown 目录。Use when the user asks to interpret,精读,解读,summarize,explain,analyze, or write an article from an academic paper PDF… | digoal/ | 8.6k | — | ~1.5k | Automated safety check: Pass | GPL-2.0 | 2 days ago |
| 2 | A skill your agent uses when a researcher needs to query biomedical databases for biomarker discovery, build target profiles from UniProt/Open Targets/STRING, rank biomarker candidates by evidence… | aws-samples/ | 274 | — | ~1.1k | Automated safety check: Pass | MIT-0 | 10 days ago |
| 3 | A skill your agent uses when the user requests current information, documentation, coding examples, or web research beyond the knowledge cutoff. | PleasePrompto/ | 292 | — | ~2.2k | Automated safety check: Warn | No licence | 1 mo ago |
| 4 | 4.Kb Manages the Morphir knowledge base under kb/ — OKF bundles and concept documents. | finos/ | 213 | — | ~2.2k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 5 | Verify a research claim or academic citation by tracing it through publication → methodology → raw data → independent replication. | inbrainfun/ | 142 | 1 repo | ~2.3k | Automated safety check: Pass | Unknown | 2 mo ago |
| 6 | 6.Referee2 Systematic audit and review by Referee 2. An agent skill from scunning1975/MixtapeTools. | scunning1975/ | 474 | 2 repos | ~2.4k | Automated safety check: Pass | No licence | 1 mo ago |
| 7 | Analyze a complete literary work into a structured Basic Memory knowledge graph. | FirefoxCSS-Store/ | 1k | — | ~4.6k | Automated safety check: Pass | No licence | today |
| 8 | A skill your agent uses when a result is surprising, impossible, contradicts a sanity check, a pipeline fails, a model won't converge, or a replication fails - before adjusting anything | K-Dense-AI/ | 350 | — | ~1.9k | Automated safety check: Pass | Unknown | 28 days ago |
| 9 | Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback). | google-deepmind/ | 3.2k | 1 repo | ~2.7k | Automated safety check: Notes | Apache-2.0 | 2 days ago |
| 10 | Read, decompose, and analyze IEEE-style papers using routed technical-reading workflows. | CloudWave818/ | 359 | — | ~591 | Automated safety check: Pass | MIT | 2 mo ago |
| 11 | Queries JGI Lakehouse (Dremio) for genomics metadata from GOLD, IMG, Mycocosm, Phytozome. | BioTender-max/ | 200 | — | ~3.7k | Automated safety check: Pass | Unknown | 3 mo ago |
| 12 | 12.Lamindb Manages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology annotation, query/search, collections, branches, storage… | K-Dense-AI/ | 48k | 1 repo | ~2.1k | Automated safety check: Pass | Apache-2.0 | 6 days ago |
| 13 | Publication-quality checks and enhancements for high-impact journal submissions, including PRISMA/MOOSE reporting, robust meta-analysis diagnostics (Hartung-Knapp, prediction intervals, influence)… | htlin222/ | 139 | — | ~1k | Automated safety check: Pass | Unknown | 18 days ago |
| 14 | Kick off and harvest a FHIR Bulk Data $export (system-, group-, or patient-level) and stream the resulting NDJSON into a batch OpenMed de-identification + NER pipeline at cohort scale. | maziyarpanahi/ | 5.5k | — | ~1.9k | Automated safety check: Pass | Apache-2.0 | today |
| 15 | Analyze a complete literary work into a structured Basic Memory knowledge graph. | basicmachines-co/ | 4.1k | — | ~8.2k | Automated safety check: Pass | AGPL-3.0 | yesterday |
| 16 | A skill your agent uses when assembling the AEA Data and Code Availability deposit for an AER, AER:Insights, or AEJ acceptance, writing the README, or auditing a replication package before the AEA… | brycewang-stanford/ | 4.6k | 1 repo | ~2.8k | Automated safety check: Pass | Unknown | 6 days ago |
| 17 | 17.SQL On Fhir Expert guidance for implementing SQL on FHIR v2 ViewDefinitions and operations to create portable, tabular projections of FHIR data. | aehrc/ | 137 | — | ~2.3k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 18 | Multi-route literature expansion + metadata normalization for evidence-first surveys. | WILLOSCAR/ | 513 | — | ~1.5k | Automated safety check: Pass | No licence | 6 days ago |
| 19 | Analyzes CUT&RUN (Skene Henikoff 2017) and CUT&Tag (Kaya-Okur 2019) chromatin profiling data. | GPTomics/ | 1.2k | 2 repos | ~4k | Automated safety check: Pass | MIT | 1 mo ago |
| 20 | Identifies differentially bound ChIP-seq regions between conditions using DiffBind, csaw (sliding windows), DESeq2/edgeR/PyDESeq2 on count matrices, NormR (control-aware), or MAnorm2. | GPTomics/ | 1.2k | 2 repos | ~5.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 21 | Normalizes ChIP-seq data using exogenous spike-in (ChIP-Rx with Drosophila chromatin per Orlando 2014 / Egan 2016; E. | GPTomics/ | 1.2k | 2 repos | ~4.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 22 | 22.Bio Geo Data Query and download from NCBI Gene Expression Omnibus (GEO) and EMBL-EBI's BioStudies/ArrayExpress mirror. | GPTomics/ | 1.2k | 2 repos | ~4.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 23 | Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux. | wu-yc/ | 1.1k | 2 repos | ~5.9k | Automated safety check: Pass | No licence | 6 mo ago |
| 24 | A skill your agent uses when running a systematic review and meta-analysis, DTA or intervention. | Aperivue/ | 333 | — | ~8.7k | Automated safety check: Pass | MIT | 6 days ago |
| 25 | Quality control, filtering, normalization, and feature selection for spatial transcriptomics data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 26 | A skill your agent uses when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory… | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 27 | Turns raw Illumina Infinium methylation BeadChip IDATs (450K, EPIC, EPICv2) into a defensible beta/M matrix with sesame (openSesame/SigDF) or minfi (RGChannelSet - MethylSet - GenomicRatioSet). | GPTomics/ | 1.2k | 1 repo | ~4.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 28 | Performs probe filtering and sample-level QC on Illumina Infinium methylation arrays (450K / EPIC / EPICv2) to decide which probes and samples to trust. | GPTomics/ | 1.2k | 1 repo | ~4.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 29 | Stratifies patients into multi-omics subtypes by building one patient-by-patient similarity network per omic, fusing them with SNF's cross-network diffusion, and spectral-clustering the fused graph… | GPTomics/ | 1.2k | 1 repo | ~4.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 30 | 30.Review Paper A skill your agent uses when writing a literature review article (narrative, scoping PRISMA-ScR or systematic). | Aperivue/ | 333 | — | ~1.3k | Automated safety check: Pass | MIT | 6 days ago |
| 31 | Comprehensive cheat sheet for using the Pathling Python API. | aehrc/ | 137 | — | ~4k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 32 | Vector database retrieval and evidence-based answering for medical research topics. | aipoch/ | 1.9k | — | ~2k | Automated safety check: Pass | MIT | 24 days ago |
| 33 | Normalizes and transforms RNA-seq count matrices for DE, visualization, clustering, and ML. | GPTomics/ | 1.2k | 1 repo | ~6.2k | Automated safety check: Pass | MIT | 1 mo ago |
| 34 | Compares Hi-C contact maps between conditions across the right scale -- differential bin-pair contacts (multiHiCcompare, diffHic), differential A/B compartments (dcHiC), differential TAD boundaries… | GPTomics/ | 1.2k | 1 repo | ~5.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 35 | Harmonizes already-normalized per-omic matrices onto a common footing before joint integration - assembling a MultiAssayExperiment, choosing the per-omic variance-stabilizing transform, deciding… | GPTomics/ | 1.2k | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 36 | Joint genotype a cohort of per-sample gVCFs with GATK (HaplotypeCaller -ERC GVCF - GenomicsDBImport or CombineGVCFs - GenotypeGVCFs) or GLnexus for DeepVariant gVCFs, producing a squared-off… | GPTomics/ | 1.2k | 1 repo | ~6.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 37 | Validate the replication package for the sewage-house-prices project. | brycewang-stanford/ | 4.6k | — | ~984 | Automated safety check: Notes | Unknown | 6 days ago |
| 38 | 38.Data Deposit Prepare a replication package for the sewage-house-prices project. | brycewang-stanford/ | 4.6k | — | ~1.2k | Automated safety check: Notes | Unknown | 6 days ago |
| 39 | Write and revise the Methods section of research papers to ensure reproducibility; use when preparing an IMRAD manuscript or responding to journal/reporting-guideline requirements (e.g… | aipoch/ | 1.9k | — | ~3.4k | Automated safety check: Pass | MIT | 24 days ago |
| 40 | 从 SQLite、JSONL、日志或历史会话中研究行为模式，核验数据质量、统计口径与案例证据， 产出可复现的分析和可验证的改进候选。用于分析历史数据、比较行为变化、提炼系统或用户 使用规律；单纯文章润色不需要启动研究流程。 | KonghaYao/ | 226 | — | ~1k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 41 | Batch effect correction for CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 42 | Build, document, test, and validate a journal-ready replication package for social science research. | joshzyj/ | 168 | — | ~19k | Automated safety check: Pass | Unknown | 23 days ago |
| 43 | 43.Data Doc Document datasets, variables, sources, and merge keys for replication | brycewang-stanford/ | 4.6k | — | ~1k | Automated safety check: Pass | Unknown | 6 days ago |
| 44 | A skill your agent uses when running the final pre-submission preflight for an Academy of Management Review (AMR) manuscript — ScholarOne portal, AOM format and length, abstract, anonymization for… | franklee16/ | 223 | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 23 days ago |
| 45 | A skill your agent uses when preparing the reproducibility / replication materials for an American Political Science Review (APSR) manuscript. | franklee16/ | 223 | 1 repo | ~1.1k | Automated safety check: Pass | No licence | 23 days ago |
| 46 | A skill your agent uses to handle reproducibility and the supplementary-material file for an Econometric Theory (ET) paper — ET has no mandatory data/code archive (theory journal); the relevant… | franklee16/ | 223 | 1 repo | ~983 | Automated safety check: Pass | No licence | 23 days ago |
| 47 | A skill your agent uses when designing experiments, sampling campaigns, or modeling studies for Environmental Science & Technology (ES&T) so the design survives expert review — environmental… | franklee16/ | 223 | 1 repo | ~882 | Automated safety check: Pass | No licence | 23 days ago |
| 48 | A skill your agent uses when designing the study behind a Global Change Biology (GCB) manuscript — manipulative experiments, observational/gradient studies, or process modelling of biological… | franklee16/ | 223 | 1 repo | ~894 | Automated safety check: Pass | No licence | 23 days ago |
