Data & Analytics

Runs parameterized Jupyter notebooks as reproducible batch report generators with papermill, renders them to HTML/PDF with nbconvert, aggregates results across samples, and makes notebook outputs…

GPTomics/bioSkills

Builds reproducible Quarto reports, presentations, and websites across R, Python, and Julia, with correct engine selection, cache-vs-freeze semantics, native cross-references, parameters, and…

GPTomics/bioSkills

Build restriction maps showing enzyme cut positions and inter-site distances along DNA using Biopython Bio.Restriction.

GPTomics/bioSkills

Quality control and exploration of RNA-seq count matrices before differential expression.

GPTomics/bioSkills

Tests whether a proposed or predicted RNA secondary structure is supported by evolutionary covariation using R-scape, which scores compensatory substitutions against a phylogeny-aware null and…

GPTomics/bioSkills

Calculate assembly and sequence statistics (N50/L50, auN, NG50/NGA50, length distribution, GC content with ambiguity handling, summary reports) using Biopython.

GPTomics/bioSkills

Build the spatial neighbor graph that every downstream spatial statistic (Moran's I, neighborhood enrichment, co-occurrence, spatial domains) inherits, using Squidpy.

GPTomics/bioSkills

Detects spatially variable genes, spatial autocorrelation, and cell-type colocalization for spatial transcriptomics using Squidpy with PySAL/esda for local statistics.

GPTomics/bioSkills

Draws TCR/BCR repertoire figures - V-J chord/circos, CDR3 spectratype, clonal-space stratification, clonal tracking across timepoints, rarefaction/extrapolation curves, overlap heatmaps, and…

GPTomics/bioSkills

Infers directed, time-delayed gene regulatory edges from BULK time-series expression using Granger causality (statsmodels VAR F-test), dynGENIE3 (tree ensembles regressing ODE-derived derivatives…

GPTomics/bioSkills

Filters germline and somatic variant callsets at the site and genotype level with GATK VQSR (VQSLOD, truth-sensitivity tranches), VETS/ScoreVariantAnnotations, NVScoreVariants, hard filters with…

GPTomics/bioSkills

Compute and interpret VCF quality-control metrics (Ti/Tv, het/hom, novel/known, missingness, HWE, contamination, relatedness) with bcftools stats, vcftools, plot-vcfstats, and identity tools…

GPTomics/bioSkills

End-to-end biomarker discovery workflow from expression data to validated biomarker panels.

GPTomics/bioSkills

End-to-end flow, spectral, and mass cytometry (CyTOF) pipeline from raw FCS files to differentially abundant/expressed cell populations.

GPTomics/bioSkills

Orchestrates imaging mass cytometry from raw MCD acquisitions to patient-level spatial analysis, chaining steinbock preprocessing, Mesmer/Cellpose segmentation, single-cell quantification…

GPTomics/bioSkills

Orchestrates the untargeted LC-MS metabolomics pipeline end-to-end (xcms 4.x feature extraction, QC/drift/normalization, confidence-stratified annotation, permutation-validated statistics…

GPTomics/bioSkills

Orchestrates the end-to-end bisulfite/EM-seq methylation pipeline from FASTQ to differentially methylated regions, chaining Trim Galore/fastp QC, Bismark alignment + deduplication, methylation…

GPTomics/bioSkills

Orchestrates neoantigen discovery from somatic variants to ranked vaccine candidates, chaining HLA typing (OptiType/arcasHLA + LOHHLA), VEP annotation (Wildtype+Frameshift plugins) +…

GPTomics/bioSkills

Run Xquik's Apify Actor for X followers, following, verified audiences, lists, communities, and overlap research.

Varnan-Tech/opendirectory

Run Xquik's Apify Actor for X searches, posts, timelines, conversations, lists, articles, and engagement research.

Varnan-Tech/opendirectory

Clean up FlyDSL kernels and shared helpers while preserving numerical behavior and performance.

ROCm/FlyDSL

Prevent semantic code duplication with capability index and check-before-write

alinaqi/maggy

Tests Amazon MWAA workflow execution end-to-end: trigger a run and monitor it to completion for Provisioned (Python DAG, via Airflow REST API) and Serverless (YAML workflow, via StartWorkflowRun).

aws/agent-toolkit-for-aws

A skill your agent uses when needing to optimize Xiaohongshu content performance, understanding why posts succeed or fail, making data-driven decisions about content strategy, or tracking account…

vivy-yi/xiaohongshu-skills

Run ad-hoc web research on a prospect (company URL or person) — Firecrawl scrapes the marketing site, key pages (pricing, careers, blog), and surfaces a brief.

Othmane-Khadri/YALC-the-GTM-operating-system

Train ML models on Databricks. An agent skill from databricks/databricks-agent-skills.

databricks/databricks-agent-skills

Add Polar billing to a TypeScript/JavaScript app using the @polar-sh/sdk package.

chmonitor/chmonitor

Guide for migrating to Polar from other payment platforms (Stripe Billing, Paddle, Lemon Squeezy, Gumroad).

chmonitor/chmonitor

Process identify anomalies and outliers in datasets using machine learning algorithms.

jeremylongshore/tons-of-skills-marketplace

Build this skill enables AI assistant to provide interpretability and explainability for machine learning models.

jeremylongshore/tons-of-skills-marketplace

Process split datasets into training, validation, and testing sets for ML model development.

jeremylongshore/tons-of-skills-marketplace

Build train machine learning models with automated workflows.

jeremylongshore/tons-of-skills-marketplace

Optimize machine learning model hyperparameters using grid search, random search, or Bayesian optimization.

jeremylongshore/tons-of-skills-marketplace

Build automated machine learning pipelines with feature engineering, model selection, and hyperparameter tuning.

jeremylongshore/tons-of-skills-marketplace

Build and evaluate classification models for supervised learning tasks with labeled data.

jeremylongshore/tons-of-skills-marketplace

Generate plots, charts, and graphs from data with automatic visualization type selection.

jeremylongshore/tons-of-skills-marketplace

Deploy this skill enables AI assistant to deploy machine learning models to production environments.

jeremylongshore/tons-of-skills-marketplace

Execute create, select, and transform features to improve machine learning model performance.

jeremylongshore/tons-of-skills-marketplace

Build this skill allows AI assistant to evaluate machine learning models using a comprehensive suite of metrics.

jeremylongshore/tons-of-skills-marketplace

Process this skill enables AI assistant to forecast future values based on historical time series data.

jeremylongshore/tons-of-skills-marketplace

Execute this skill empowers AI assistant to perform regression analysis and modeling using the regression-analysis-tool plugin.

jeremylongshore/tons-of-skills-marketplace

Process automate data cleaning, transformation, and validation for ML tasks.

jeremylongshore/tons-of-skills-marketplace

Analyze datasets by running clustering algorithms (K-means, DBSCAN, hierarchical) to identify data groups.

jeremylongshore/tons-of-skills-marketplace

Implement machine learning experiment tracking using MLflow or Weights & Biases.

jeremylongshore/tons-of-skills-marketplace

Build this skill enables AI assistant to track and manage ai/ml model versions using the model-versioning-tracker plugin.

jeremylongshore/tons-of-skills-marketplace

Validate AI/ML models and datasets for bias, fairness, and ethical concerns.

jeremylongshore/tons-of-skills-marketplace

Process use when you need to ensure database integrity through comprehensive data validation.

jeremylongshore/tons-of-skills-marketplace

Dung khi co data tho tu Meta, TikTok, GA4, CRM hay Google Sheet va can bien thanh insight ra quyet dinh duoc — kem decision log ghi quyet dinh, can cu, tac dong ky vong va ngay review lai.

minhnv0807/ai-business-skills