Data & Analytics

[omh] Data pipeline work -- an ETL or streaming job, a backfill or replay, duplicate events, a schema change downstream, a lineage question, a data-quality regression: make every rerun idempotent…

rlaope/oh-my-hermes

Evaluate trained machine learning models with the right metrics and comparison logic.

foryourhealth111-pixel/Vibe-Skills

Plan and manage cash flow to ensure adequate liquidity while minimizing opportunity cost of excess cash.

JoelLewis/finance_skills

Apply statistical methods to financial data including descriptive statistics, covariance estimation, regression, hypothesis testing, and resampling.

JoelLewis/finance_skills

Model, forecast, and interpret volatility using time-series models and options-implied measures.

JoelLewis/finance_skills

A skill your agent uses when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after…

aipoch/medical-research-skills

Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially…

aipoch/medical-research-skills

Batch-unify typography (font family, size, italics) for Word table cells and embedded charts; use when you need consistent formatting across theses/reports without changing body text.

aipoch/medical-research-skills

A skill your agent uses when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab…

aipoch/medical-research-skills

A skill your agent uses when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization.

aipoch/medical-research-skills

A skill your agent uses when evaluating the clinical utility of a binary prediction model from a single clinical CSV file by fitting a logistic decision-curve model, plotting decision and…

aipoch/medical-research-skills

A skill your agent uses when building a decision tree model in R and generating feature importance ranking outputs.

aipoch/medical-research-skills

Programmatic access to DrugBank drug and target data; use when you need to download, parse, and analyze DrugBank XML for properties, interactions, pathways, and pharmacology.

aipoch/medical-research-skills

A skill your agent uses when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression…

aipoch/medical-research-skills

ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speciation events…

aipoch/medical-research-skills

Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible reports.

aipoch/medical-research-skills

A skill your agent uses when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk…

aipoch/medical-research-skills

Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statistical notes.

aipoch/medical-research-skills

Writes complete, publication-grade figure legends that can stand on their own.

aipoch/medical-research-skills

A skill your agent uses to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object.

aipoch/medical-research-skills

A skill your agent uses when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample…

aipoch/medical-research-skills

A skill your agent uses when creating journal cover images, generating scientific artwork prompts, or designing graphical abstracts.

aipoch/medical-research-skills

A skill your agent uses when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group.

aipoch/medical-research-skills

A skill your agent uses when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted…

aipoch/medical-research-skills

A skill your agent uses when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path…

aipoch/medical-research-skills

A skill your agent uses when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.

aipoch/medical-research-skills

Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any network access.

aipoch/medical-research-skills

Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting shared miRNA evidence from local ceRNA…

aipoch/medical-research-skills

Process, clean, and compare mass spectrometry (MS/MS) spectra with Matchms; use when you need reproducible spectral filtering and similarity scoring for metabolomics workflows.

aipoch/medical-research-skills

A low-level plotting library for comprehensive customization.

aipoch/medical-research-skills

Generates a Meta-analysis results section description for funnel plots, including statistical tables (Egger's, Begg's, Trim & Fill) and figure legends.

aipoch/medical-research-skills

A skill your agent uses when assessing how well a survival model's predicted probabilities agree with observed outcomes by fitting a Cox model and generating bootstrap calibration curves at one or…

aipoch/medical-research-skills

A skill your agent uses when constructing a prognosis nomogram from survival-related clinical predictors, exporting the nomogram bundle and C-index table, and optionally rendering the final nomogram…

aipoch/medical-research-skills

A skill your agent uses when performing PCA principal component dimensionality reduction on tabular numeric data.

aipoch/medical-research-skills

A skill your agent uses when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables…

aipoch/medical-research-skills

Assess bias in medical prediction model studies using PROBAST tool.

aipoch/medical-research-skills

Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for…

aipoch/medical-research-skills

Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking), detect isotope…

aipoch/medical-research-skills

Therapeutics Data Commons (PyTDC) for AI-ready therapeutic ML datasets and benchmarks; use it when you need standardized dataset loading, meaningful splits (e.g., scaffold/cold-start), and…

aipoch/medical-research-skills

Evaluates bias in medical literature (prognosis studies) using QUAPAS criteria.

aipoch/medical-research-skills

Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report.

aipoch/medical-research-skills

A skill your agent uses when you need a standardized R CLI workflow to train a two-class random forest model from an expression-like feature matrix, rank variable importance, and generate…

aipoch/medical-research-skills

A skill your agent uses when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with…

aipoch/medical-research-skills

A skill your agent uses when performing correlation analysis between two variables including Pearson and Spearman correlation methods.

aipoch/medical-research-skills

A skill your agent uses when generating Sankey or alluvial plots from sample annotation tables where rows are samples and selected columns are categorical stages such as risk group, response status…

aipoch/medical-research-skills

Local schedule management for adding events, tracking deadlines, generating reminders, and detecting time conflicts when users need offline scheduling with optional popup notifications.

aipoch/medical-research-skills

Guided statistical analysis for test selection, assumption checks, power analysis, and APA-style reporting.

aipoch/medical-research-skills

A skill your agent uses when you need a standardized R CLI workflow to run two-class SVM-RFE feature ranking on an expression-like matrix, choose an informative feature count from cross-validated…

aipoch/medical-research-skills