Data & Analytics · For researchers

A skill your agent uses when an Obsidian knowledge system needs classification, deduplication, retrieval, synchronization, debt queues, or governed Agent/Wiki promotion.

Mark393295827/third-brain-v7-skills

The editorial standard for Flowfile's docs site — the house style (register-2 voice rules), the persona-based nav map (which tab serves which arriving audience), the claim-type→source-of-truth…

Edwardvaneechoud/Flowfile

用于学术调研、论文精读、相关工作梳理、百科知识查询和引用链追溯。

OpenSenseNova/SenseNova-Skills

Search and download images via Google Custom Search API with LLM-powered selection.

glebis/claude-skills

Load when querying STRING for the protein-protein interaction neighborhood of a bulk RNA-seq DEG list and finding hub genes.

TianGzlab/OmicsClaw

A skill your agent uses when the final answer strategy calls for a prediction, forecast, probability estimate, price target, expected value, threshold outcome, scenario outlook, or prediction-style…

NVIDIA-AI-Blueprints/deep-researcher-agent

End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing.

ClawBio/ClawBio

A skill your agent uses when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels…

xuzhougeng/wisp-science

Stress-test a finding against the choices you did not make. An agent skill from pedrohcgs/claude-code-my-workflow.

pedrohcgs/claude-code-my-workflow

Build and interpret polygenic risk scores (PRS) for complex diseases using GWAS summary statistics.

wu-yc/LabClaw

Load when checking a bulk RNA-seq count matrix for library-size outliers, gene detection rates, and sample-sample correlation before DE.

TianGzlab/OmicsClaw

Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results.

aipoch/medical-research-skills

Identifies essential genes from CRISPR-Cas9 fitness screens using BAGEL2 (Kim & Hart 2021 Genome Med), a Bayesian classifier scoring per-gene Bayes Factors via log-likelihood ratios over per-sgRNA…

GPTomics/bioSkills

Build genome-browser-style multi-track figures with pyGenomeTracks (config-driven), Gviz (R), and IGV batch screenshotting.

GPTomics/bioSkills

Detects aberrant splicing in single rare-disease patients vs a control panel using FRASER 2.0 (Bioconductor; Beta-binomial autoencoder on Intron Jaccard Index, default delta cutoff 0.1, q…

GPTomics/bioSkills

Production-ready genomics and epigenomics data processing for BixBench questions.

wu-yc/LabClaw

Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux.

wu-yc/LabClaw

A skill your agent uses when data needs statistical analysis.

Aperivue/medsci-skills

Load when summarising STAR / HISAT2 / Salmon alignment-rate logs in bulk RNA-seq.

TianGzlab/OmicsClaw

Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer.

FreedomIntelligence/OpenClaw-Medical-Skills

Cell segmentation from multiplexed tissue images. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

FreedomIntelligence/OpenClaw-Medical-Skills

Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt.

FreedomIntelligence/OpenClaw-Medical-Skills

Cell type assignment from marker expression in IMC data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

FreedomIntelligence/OpenClaw-Medical-Skills

Build spatial neighbor graphs for spatial transcriptomics data using Squidpy.

FreedomIntelligence/OpenClaw-Medical-Skills

Quality control, filtering, normalization, and feature selection for spatial transcriptomics data.

FreedomIntelligence/OpenClaw-Medical-Skills

Build a knowledge base from web content with Firecrawl. An agent skill from firecrawl/skills.

firecrawl/skills

面向 Nature Portfolio 与高影响力期刊的证据驱动科研绘图技能。用于从原始或汇总数据设计单图与多面板 figure、选择合适图形语法、编写 Python/R 绘图代码、重绘现有图件、生成机制示意图草案、撰写图注并导出可编辑 SVG/PDF 与高分辨率 TIFF/PNG；同时检查数据完整性、颜色可访问性、统计标注和最终尺寸可读性。触发场景包括 Nature…

LeonChaoX/qinyan-academic-skills

Tests associations between categorical variables in clinical data using chi-square, Fisher's exact, Boschloo, Cochran-Mantel-Haenszel, and modern McNemar variants with calibrated confidence…

GPTomics/bioSkills

Performs logistic regression for clinical trial outcomes (binary, ordinal, multinomial) with marginal-vs-conditional estimand reporting per FDA 2023 covariate adjustment guidance…

GPTomics/bioSkills

Performs subgroup and heterogeneous treatment effect (HTE) analyses for clinical trials.

GPTomics/bioSkills

Map N6-methyladenosine (m6A) RNA modifications at single-nucleotide resolution using miCLIP (Linder 2015), miCLIP2 + m6Aboost machine learning (Kortel 2021), GLORI (Liu 2023, antibody-free chemical…

GPTomics/bioSkills

Quality control for pooled CRISPR screens covering library representation, Gini index, log-skew, replicate Pearson and Spearman concordance, essentialome precision-recall AUC against CEGv2 (Hart…

GPTomics/bioSkills

Extract numerical data from scientific figure images using Claude vision + OpenCV calibration.

ClawBio/ClawBio

Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for…

aipoch/medical-research-skills

Load when checking raw FASTQ quality (Phred / GC / adapter / Q20-Q30) before alignment in bulk RNA-seq.

TianGzlab/OmicsClaw

A skill your agent uses when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after…

aipoch/medical-research-skills

Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially…

aipoch/medical-research-skills

A skill your agent uses when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization.

aipoch/medical-research-skills

A skill your agent uses when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk…

aipoch/medical-research-skills

Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statistical notes.

aipoch/medical-research-skills

Writes complete, publication-grade figure legends that can stand on their own.

aipoch/medical-research-skills

A skill your agent uses to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object.

aipoch/medical-research-skills

A skill your agent uses when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample…

aipoch/medical-research-skills

A skill your agent uses when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted…

aipoch/medical-research-skills

Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any network access.

aipoch/medical-research-skills

Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting shared miRNA evidence from local ceRNA…

aipoch/medical-research-skills

A skill your agent uses when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables…

aipoch/medical-research-skills

Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report.

aipoch/medical-research-skills