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Data & Analytics · By aipoch
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 23 days ago |
| 2 | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. | aipoch/ | 1.9k | — | ~3.7k | Automated safety check: Pass | MIT | 23 days ago |
| 3 | End-to-end Neuropixels extracellular electrophysiology analysis (SpikeGLX/Open Ephys/NWB) including preprocessing, motion correction, Kilosort4 spike sorting, QC metrics, and Allen/IBL-style… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 23 days ago |
| 4 | Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results. | aipoch/ | 1.9k | — | ~2.5k | Automated safety check: Pass | MIT | 23 days ago |
| 5 | Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. | aipoch/ | 1.9k | 2 repos | ~4k | Automated safety check: Pass | MIT | 23 days ago |
| 6 | Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for… | aipoch/ | 1.9k | 1 repo | ~2.9k | Automated safety check: Pass | MIT | 23 days ago |
| 7 | A skill your agent uses when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after… | aipoch/ | 1.9k | — | ~2.8k | Automated safety check: Pass | MIT | 23 days ago |
| 8 | Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially… | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 23 days ago |
| 9 | Batch-unify typography (font family, size, italics) for Word table cells and embedded charts; use when you need consistent formatting across theses/reports without changing body text. | aipoch/ | 1.9k | — | ~3k | Automated safety check: Pass | MIT | 23 days ago |
| 10 | A skill your agent uses when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 23 days ago |
| 11 | A skill your agent uses when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization. | aipoch/ | 1.9k | — | ~2k | Automated safety check: Pass | MIT | 23 days ago |
| 12 | A skill your agent uses when evaluating the clinical utility of a binary prediction model from a single clinical CSV file by fitting a logistic decision-curve model, plotting decision and… | aipoch/ | 1.9k | — | ~2.8k | Automated safety check: Pass | MIT | 23 days ago |
| 13 | A skill your agent uses when building a decision tree model in R and generating feature importance ranking outputs. | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 23 days ago |
| 14 | Programmatic access to DrugBank drug and target data; use when you need to download, parse, and analyze DrugBank XML for properties, interactions, pathways, and pharmacology. | aipoch/ | 1.9k | — | ~1.6k | Automated safety check: Pass | MIT | 23 days ago |
| 15 | A skill your agent uses when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression… | aipoch/ | 1.9k | — | ~2.9k | Automated safety check: Pass | MIT | 23 days ago |
| 16 | 16.Etetoolkit ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speciation events… | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 23 days ago |
| 17 | Statistical analysis and reporting for experimental datasets; use when you need to interpret experimental results, test significance (t-tests/ANOVA), or generate reproducible reports. | aipoch/ | 1.9k | — | ~1.1k | Automated safety check: Pass | MIT | 23 days ago |
| 18 | A skill your agent uses when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk… | aipoch/ | 1.9k | — | ~3.2k | Automated safety check: Pass | MIT | 23 days ago |
| 19 | Generate standardized figure legends for scientific figures and charts; use when preparing publication-ready legends that summarize design, variables, sample size, and key statistical notes. | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 23 days ago |
| 20 | Writes complete, publication-grade figure legends that can stand on their own. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 23 days ago |
| 21 | A skill your agent uses to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. | aipoch/ | 1.9k | — | ~3.9k | Automated safety check: Pass | MIT | 23 days ago |
| 22 | A skill your agent uses when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample… | aipoch/ | 1.9k | — | ~3.1k | Automated safety check: Pass | MIT | 23 days ago |
| 23 | A skill your agent uses when creating journal cover images, generating scientific artwork prompts, or designing graphical abstracts. | aipoch/ | 1.9k | — | ~1.8k | Automated safety check: Pass | MIT | 23 days ago |
| 24 | A skill your agent uses when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group. | aipoch/ | 1.9k | — | ~2.5k | Automated safety check: Pass | MIT | 23 days ago |
| 25 | A skill your agent uses when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted… | aipoch/ | 1.9k | — | ~2.5k | Automated safety check: Pass | MIT | 23 days ago |
| 26 | A skill your agent uses when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path… | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 23 days ago |
| 27 | A skill your agent uses when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots. | aipoch/ | 1.9k | — | ~3.6k | Automated safety check: Pass | MIT | 23 days ago |
| 28 | Generate statistics for publication-year and journal distributions from local references or PDFs; use when you need standardized Year/Journal tables and a summary without any network access. | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 23 days ago |
| 29 | Use this bioinformatics data analysis skill to construct a database-driven lncRNA-mRNA regulatory network from target lncRNA and/or gene lists by projecting shared miRNA evidence from local ceRNA… | aipoch/ | 1.9k | — | ~2.7k | Automated safety check: Pass | MIT | 23 days ago |
| 30 | 30.Matchms Process, clean, and compare mass spectrometry (MS/MS) spectra with Matchms; use when you need reproducible spectral filtering and similarity scoring for metabolomics workflows. | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 23 days ago |
| 31 | 31.Matplotlib A low-level plotting library for comprehensive customization. | aipoch/ | 1.9k | — | ~3.8k | Automated safety check: Pass | MIT | 23 days ago |
| 32 | Generates a Meta-analysis results section description for funnel plots, including statistical tables (Egger's, Begg's, Trim & Fill) and figure legends. | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 23 days ago |
| 33 | A skill your agent uses when assessing how well a survival model's predicted probabilities agree with observed outcomes by fitting a Cox model and generating bootstrap calibration curves at one or… | aipoch/ | 1.9k | — | ~2.7k | Automated safety check: Pass | MIT | 23 days ago |
| 34 | A skill your agent uses when constructing a prognosis nomogram from survival-related clinical predictors, exporting the nomogram bundle and C-index table, and optionally rendering the final nomogram… | aipoch/ | 1.9k | — | ~2.7k | Automated safety check: Pass | MIT | 23 days ago |
| 35 | A skill your agent uses when performing PCA principal component dimensionality reduction on tabular numeric data. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 23 days ago |
| 36 | A skill your agent uses when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables… | aipoch/ | 1.9k | — | ~2.2k | Automated safety check: Pass | MIT | 23 days ago |
| 37 | Assess bias in medical prediction model studies using PROBAST tool. | aipoch/ | 1.9k | — | ~1.2k | Automated safety check: Pass | MIT | 23 days ago |
| 38 | 38.Pydeseq Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for… | aipoch/ | 1.9k | — | ~1.8k | Automated safety check: Pass | MIT | 23 days ago |
| 39 | Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking), detect isotope… | aipoch/ | 1.9k | — | ~852 | Automated safety check: Pass | MIT | 23 days ago |
| 40 | 40.Pytdc Therapeutics Data Commons (PyTDC) for AI-ready therapeutic ML datasets and benchmarks; use it when you need standardized dataset loading, meaningful splits (e.g., scaffold/cold-start), and… | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 23 days ago |
| 41 | Evaluates bias in medical literature (prognosis studies) using QUAPAS criteria. | aipoch/ | 1.9k | — | ~1.2k | Automated safety check: Pass | MIT | 23 days ago |
| 42 | Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 23 days ago |
| 43 | A skill your agent uses when you need a standardized R CLI workflow to train a two-class random forest model from an expression-like feature matrix, rank variable importance, and generate… | aipoch/ | 1.9k | — | ~2.7k | Automated safety check: Pass | MIT | 23 days ago |
| 44 | A skill your agent uses when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with… | aipoch/ | 1.9k | — | ~2.6k | Automated safety check: Pass | MIT | 23 days ago |
| 45 | A skill your agent uses when performing correlation analysis between two variables including Pearson and Spearman correlation methods. | aipoch/ | 1.9k | — | ~1.3k | Automated safety check: Pass | MIT | 23 days ago |
| 46 | A skill your agent uses when generating Sankey or alluvial plots from sample annotation tables where rows are samples and selected columns are categorical stages such as risk group, response status… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 23 days ago |
| 47 | Local schedule management for adding events, tracking deadlines, generating reminders, and detecting time conflicts when users need offline scheduling with optional popup notifications. | aipoch/ | 1.9k | — | ~1.1k | Automated safety check: Pass | MIT | 23 days ago |
| 48 | Guided statistical analysis for test selection, assumption checks, power analysis, and APA-style reporting. | aipoch/ | 1.9k | — | ~2.8k | Automated safety check: Pass | MIT | 23 days ago |
