AI & LLM Engineering · For researchers

Runs web-grounded searches through Perplexity's Sonar models over OpenRouter for current events, recent literature and cited facts beyond the model's training cutoff.

davila7/claude-code-templates

Local hybrid search for markdown notes and docs. An agent skill from alsk1992/CloddsBot.

alsk1992/CloddsBot

Searches, summarizes, compares and answers questions from an already configured AutoRAG librarian agent over local documents and authorized datasources.

Marker-Inc-Korea/AutoRAG

Indexes research papers on the Hugging Face Hub from arXiv, links them to models and datasets, claims authorship and generates markdown research articles from templates.

huggingface/skills

Read and search GitHub repository documentation via gitmcp.io MCP service.

AgentTeam-TaichuAI/ScienceClaw

A skill your agent uses when the user needs to run GitNexus CLI commands like analyze/index a repo, check status, clean the index, generate a wiki, or list indexed repos.

aws-samples/sample-kolya-br-proxy

Quick reference for wdoc, a command-line and Python tool that summarizes, searches and answers questions over documents of many file types.

thiswillbeyourgithub/wdoc

Rigor Explore compatible skill slug for meaningful and potentially novel deep learning research candidates.

lllllllama/RigorPilot-Skills

Meta-research под вопрос или решение: веб-поиск, источники, Q&A отчёт с цитатами по файлам для повторного использования.

Socialpranker/deepdive

Drives a self-hosted Open Notebook instance to organize sources into notebooks, chat with documents, generate notes and multi-speaker podcasts, and search across material.

agent-skills-hub/agent-skills-hub

Interview the user about their RAGU use case, select an appropriate RAGU pipeline, and generate a validated ragubuild.yaml plus a runnable build<name.py script.

RaguTeam/RAGU

Routes agents to the right tangermeme reference for analyzing trained genomic deep learning models, from attributions and motif experiments to variant effects and design.

jmschrei/tangermeme

Plans and audits runs of the HypoGeniC and HypoRefine packages, which propose hypotheses from labeled text datasets, with local checks before any model call.

K-Dense-AI/scientific-agent-skills

Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model.

JimLiu/science-skills

All-atom protein design using BoltzGen diffusion model. An agent skill from adaptyvbio/protein-design-skills.

adaptyvbio/protein-design-skills

Used to invoke the PXMeter tool for rigorous quality assessment of biomolecular structure prediction models (e.g., proteins, nucleic acids, small molecules).

bytedance/PXMeter

A skill your agent uses whenever the user asks to generate, collect, inspect, or prepare early-experience training data (Implicit World Modeling or Self-Reflection, in the sense of arXiv:2510.08558)…

OSU-NLP-Group/EarlyExperience

Rigor Improve implementation leaf skill for auditable candidate implementation in deep learning research repositories.

lllllllama/RigorPilot-Skills

A skill your agent uses when the user needs academic paper retrieval — searching scientific literature by author/year/journal, finding paper chunks for RAG-style citations, or expanding original…

opendatalab/Sciverse-Agent-Tools

Guides training and analyzing sparse autoencoders with SAELens to break neural network activations into interpretable features, including superposition and monosemanticity studies.

Orchestra-Research/AI-Research-SKILLs

Explains how to run, integrate and debug the deep-research-mcp project through its CLI, Python API or MCP server, with OpenAI, Gemini and DR-Tulu backends.

pminervini/deep-research-mcp

Find the decisions in a pipeline that do not need the expensive model and propose the gate for each: a rule, a classic classifier, or a small model, with fail-closed routing.

undefined-ui/second-brain-os

Turn unstructured text into validated, structured variables at corpus scale with LLMs: codebook design, dev/gold-set construction, DSPy prompt optimization, a hard reliability gate (Cohen κ ≥ 0.70)…

joshzyj/open-scholar-skill

Rigor Improve / Rigor Explore run leaf skill for bounded exploratory evidence in deep learning research repositories.

lllllllama/RigorPilot-Skills

Walks through aligning language models with SimPO, a reference-free preference optimization method, using accelerate configs for Mistral 7B, Llama 3 8B and math-focused models.

Orchestra-Research/AI-Research-SKILLs

Guides reinforcement-learning post-training of LLMs with slime, which pairs Megatron-LM training with SGLang rollouts, including GRPO runs on GLM, Qwen3 and Llama 3 models.

Orchestra-Research/AI-Research-SKILLs

Sciverse academic paper retrieval: structured metadata search, semantic chunk retrieval for RAG, and character-range content reading (offsets in Unicode code points).

opendatalab/Sciverse-Agent-Tools

A skill your agent uses when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with…

aws-samples/amazon-bedrock-agents-healthcare-lifesciences

Turn a vague task into a testable definition of done and generate an executable goal-test script for it, optionally with a bounded retry loop around a headless agent.

undefined-ui/second-brain-os

DeePMD-kit and Deep Potential Molecular Dynamics workflows. An agent skill from JCLiuGroup/AI-Computational-Chemist.

JCLiuGroup/AI-Computational-Chemist

A skill your agent uses when customizing Deep Researcher Agent behavior through Jinja2 prompt templates or per-agent model selection — editing prompts under src/deepresearcheragent/agents//prompts/…

NVIDIA-AI-Blueprints/deep-researcher-agent

Fetches Hugging Face paper pages as markdown and reads paper metadata through the papers API when you share a paper URL, an arXiv link or an arXiv ID.

huggingface/skills

Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology.

JimLiu/science-skills

Guides mechanistic interpretability work with TransformerLens: loading models, caching activations, using HookPoints, activation patching and attention-pattern analysis.

Orchestra-Research/AI-Research-SKILLs

A skill your agent uses when the user provides a paper, arXiv link, technical report, model card, checkpoint name, GitHub repository, or local codebase and asks to research, explain, compare, or…

mingti-org/phyai

Given a list of models (HF name stubs) that have valid agentic ID eval scores in Supabase, build a ranking table: raw per-benchmark accuracy on the 3 ID benchmarks (SWE-Bench-100…

open-thoughts/OpenThoughts-Agent

Interact with MedrixFlow AI agent platform via its HTTP API.

Citrus-bit/Anaxa

Guides causal experiments on PyTorch models with pyvene, such as causal tracing, activation patching and interchange intervention training, to test how a model works.

Orchestra-Research/AI-Research-SKILLs

Trains and uses SentencePiece tokenizers on raw text, with BPE or Unigram models, for multilingual and CJK projects that need a reproducible vocabulary.

Orchestra-Research/AI-Research-SKILLs

Guides reinforcement-learning research with torchforge, Meta's PyTorch-native library that keeps RL algorithms apart from infrastructure, including GRPO math-reasoning runs.

Orchestra-Research/AI-Research-SKILLs

Sets up large-scale LLM training with NVIDIA Megatron-Core, choosing tensor, pipeline, data, context and expert parallelism for a given model size and GPU count.

Orchestra-Research/AI-Research-SKILLs

Trains LLMs with reinforcement learning using verl, from ByteDance's Seed team, with GRPO, PPO and other algorithms and swappable training and rollout backends.

Orchestra-Research/AI-Research-SKILLs

This skill should be used when working with genomic interval data (BED files) for machine learning tasks.

davila7/claude-code-templates

技能系统导航。当用户询问"你能做什么"、"有什么功能"、"有什么技能"或不确定如何完成某个任务时，使用此技能列出所有可用技能并建议最合适的技能。此技能是每个对话开始时默认加载的，用于技能发现。

Health-Yang/MineEcho

Graph traversal, Lorentz hierarchy, and concept relationship operations for HyperspaceDB.

YARlabs/hyperspace-db

Build and query a local vector database + GraphRAG over your entire reference library (Zotero or a PDF folder) for literature review.

joshzyj/open-scholar-skill

Query CZ CELLxGENE Census (61M+ cells). An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Graph-based drug discovery toolkit. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates