GitHub organization
Agent skills by K-Dense-AI
- skills
- 278
- repositories
- 6
Repositories by K-Dense-AI
- scientific-agent-skillsTurn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.48k stars · 152 skills
- claude-scientific-writerA general purpose scientific writer2.4k stars · 21 skills
- science-superpowersComposable computational-science methodology skills for AI research agents — pre-registration over TDD. A science-domain reimplementation of Superpowers.348 stars · 13 skills
- mimeoMimeograph an expert into a SKILL.md or AGENTS.md for your agent.282 stars · 21 skills
- mimeographsReady-to-use agent skills that clone the thinking of founders, philosophers, and scientists into your agent. Generated with K-Dense-AI/mimeo.129 stars · 60 skills
- scientific-agentsExpert-thinking AGENTS.md profiles that teach AI agents to reason like senior scientists and engineers.200 stars · 11 skills
Skills by K-Dense-AI, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Finds papers in OpenAlex, PubMed and Google Scholar, turns DOIs, PMIDs and arXiv IDs into clean BibTeX, and validates citations for a manuscript or thesis. | K-Dense-AI/ | 2.4k | 2 repos | ~3.9k | Automated safety check: Notes | MIT | 7 days ago |
| 2 | Formulate evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready… | K-Dense-AI/ | 2.4k | 2 repos | ~3.9k | Automated safety check: Pass | MIT | 7 days ago |
| 3 | Prepare evidence-bounded, constructive peer-review drafts and structured manuscript assessments. | K-Dense-AI/ | 2.4k | 2 repos | ~3.1k | Automated safety check: Notes | MIT | 7 days ago |
| 4 | Create and audit editable scientific posters in macro-free PowerPoint (.pptx) from author-approved local content and assets. | K-Dense-AI/ | 2.4k | 2 repos | ~2.7k | Automated safety check: Notes | MIT | 7 days ago |
| 5 | Estimates reaction fluxes inside cells from steady-state carbon-13 labeling data with a bundled mfapy-based solver, and reports which fluxes the data pin down. | K-Dense-AI/ | 48k | 1 repo | ~3.2k | Automated safety check: Pass | MIT | 2 days ago |
| 6 | Provide qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls. | K-Dense-AI/ | 2.4k | 2 repos | ~2.9k | Automated safety check: Notes | MIT | 7 days ago |
| 7 | Plans, runs, and documents analytical method validation, verification, or transfer studies under ICH Q2(R2)/Q14, USP, ICH M10, CLSI EP, or ISO/IEC 17025. | K-Dense-AI/ | 48k | 1 repo | ~4.9k | Automated safety check: Notes | MIT | 2 days ago |
| 8 | Draft, revise, and audit scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency… | K-Dense-AI/ | 2.4k | 2 repos | ~3.5k | Automated safety check: Pass | MIT | 7 days ago |
| 9 | Runs Cantera constant-volume or constant-pressure ignition simulations and reports temperature-based ignition delay with mechanism provenance and checks. | K-Dense-AI/ | 48k | 1 repo | ~2.2k | Automated safety check: Pass | MIT | 2 days ago |
| 10 | Prepare journal manuscripts, conference papers, research posters, and grant documents using venue-specific formatting guidance and bundled LaTeX scaffolds. | K-Dense-AI/ | 2.4k | 2 repos | ~2.9k | Automated safety check: Pass | MIT | 7 days ago |
| 11 | Build slide decks and presentations for research talks. An agent skill from K-Dense-AI/claude-scientific-writer. | K-Dense-AI/ | 2.4k | 15 repos | ~5.4k | Automated safety check: Notes | MIT | 7 days ago |
| 12 | Predicts how small molecules bind to a protein with DiffDock, covering batch docking, pose ranking by confidence and checks on the results; not for binding affinity. | K-Dense-AI/ | 48k | 1 repo | ~3k | Automated safety check: Notes | MIT | 2 days ago |
| 13 | A skill your agent uses when about to claim a result, effect, significance, or that an analysis reproduces, before reporting or writing it up - requires running the analysis fresh and reading the… | K-Dense-AI/ | 348 | 1 repo | ~1.5k | Automated safety check: Pass | Unknown | 23 days ago |
| 14 | Plans and audits runs of the HypoGeniC and HypoRefine packages, which propose hypotheses from labeled text datasets, with local checks before any model call. | K-Dense-AI/ | 48k | 1 repo | ~3.6k | Automated safety check: Notes | MIT | 2 days ago |
| 15 | Builds conference-size scientific posters in LaTeX with beamerposter, tikzposter or baposter, including figure preparation, compilation and print preflight checks. | K-Dense-AI/ | 2.4k | 13 repos | ~4.1k | Automated safety check: Notes | MIT | 7 days ago |
| 16 | Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. | K-Dense-AI/ | 2.4k | 16 repos | ~3.6k | Automated safety check: Notes | MIT | 7 days ago |
| 17 | Builds market research reports and market sizing or forecast scenarios in which every claim, source, assumption and uncertainty can be traced and audited. | K-Dense-AI/ | 2.4k | 1 repo | ~3.5k | Automated safety check: Pass | MIT | 7 days ago |
| 18 | Organizes scope, controlled documents, risk files and traceability into draft evidence for human review against ISO 13485, 14971, 17025 and 15189. | K-Dense-AI/ | 48k | 1 repo | ~4.6k | Automated safety check: Notes | MIT | 2 days ago |
| 19 | Format and structurally validate local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized licensed professionals. | K-Dense-AI/ | 2.4k | 1 repo | ~2.7k | Automated safety check: Pass | MIT | 7 days ago |
| 20 | Creates research posters in LaTeX using beamerposter, tikzposter, or baposter. | K-Dense-AI/ | 48k | 1 repo | ~2.7k | Automated safety check: Notes | MIT | 2 days ago |
| 21 | A skill your agent uses when you have an approved research question and need a concrete analysis plan, before touching outcome data or fitting any model | K-Dense-AI/ | 348 | — | ~1.7k | Automated safety check: Pass | Unknown | 23 days ago |
| 22 | Applies the mental models and frameworks of Andrej Karpathy (deep learning, former Director of AI at Tesla, founding member of OpenAI, Eureka Labs). | K-Dense-AI/ | 282 | — | ~1.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 23 | Runs systematic, scoping or narrative literature reviews across PubMed, arXiv, bioRxiv and Semantic Scholar, with citation checks and Markdown or PDF output. | K-Dense-AI/ | 48k | 1 repo | ~3.2k | Automated safety check: Notes | MIT | 2 days ago |
| 24 | A skill your agent uses when facing 2+ independent investigations that can proceed without shared state - parallel literature survey, multi-dataset replication, or pre-specified robustness checks | K-Dense-AI/ | 348 | — | ~1.3k | Automated safety check: Pass | Unknown | 23 days ago |
| 25 | 25.Andrew Ng Applies the reasoning, principles, and frameworks of Andrew Ng (machine learning pioneer, co-founder of Coursera and DeepLearning.AI, Stanford University, and former Google Brain lead). | K-Dense-AI/ | 282 | — | ~1.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 26 | 26.Matlab Builds, reviews, migrates, and plans MATLAB or GNU Octave numerical workflows. | K-Dense-AI/ | 48k | 1 repo | ~4.1k | Automated safety check: Notes | MIT | 2 days ago |
| 27 | Generate or edit images with AI models through the OpenRouter Image API (Gemini, Seedream, Recraft, GPT-Image, Riverflow). | K-Dense-AI/ | 2.4k | 1 repo | ~3.8k | Automated safety check: Notes | MIT | 7 days ago |
| 28 | A skill your agent uses when your human partner has explicitly opted into exploratory or feasibility mode - a compute-heavy simulation, an unproven pipeline, an unbenchmarked solver, an untested… | K-Dense-AI/ | 348 | — | ~4.2k | Automated safety check: Pass | Unknown | 23 days ago |
| 29 | Applies the reasoning, architectural principles, and AI philosophy of Christopher Manning (natural language processing expert, Stanford University, director of Stanford AI Lab). | K-Dense-AI/ | 282 | — | ~1.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 30 | Applies the epidemiological reasoning and population-health frameworks of Albert Hofman (Harvard epidemiologist, Rotterdam Study). | K-Dense-AI/ | 129 | — | ~1.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 31 | Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. | K-Dense-AI/ | 48k | 1 repo | ~5k | Automated safety check: Pass | MIT | 2 days ago |
| 32 | Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. | K-Dense-AI/ | 2.4k | — | ~3.3k | Automated safety check: Pass | MIT | 7 days ago |
| 33 | Compile current scholarly evidence for a scientific manuscript or research brief. | K-Dense-AI/ | 2.4k | 2 repos | ~3.6k | Automated safety check: Pass | MIT | 7 days ago |
| 34 | You MUST use this before any data analysis or investigation - before exploring a dataset, loading or profiling data, running a model, computing a statistic, or testing an idea, and before any… | K-Dense-AI/ | 348 | — | ~2.5k | Automated safety check: Pass | Unknown | 23 days ago |
| 35 | Applies the reasoning style of Daphne Koller (machine learning pioneer, co-founder of Coursera, founder and CEO of Insitro). | K-Dense-AI/ | 282 | — | ~1.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 36 | Applies the strategic, philanthropic, and operational frameworks of Andrew Carnegie, founder of Carnegie Steel. | K-Dense-AI/ | 129 | — | ~1.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 37 | Create publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. | K-Dense-AI/ | 2.4k | 2 repos | ~4.3k | Automated safety check: Notes | MIT | 7 days ago |
| 38 | 38.Nmrglue Processes calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions. | K-Dense-AI/ | 48k | 1 repo | ~2.1k | Automated safety check: Pass | MIT | 2 days ago |
| 39 | A skill your agent uses when a result is surprising, impossible, contradicts a sanity check, a pipeline fails, a model won't converge, or a replication fails - before adjusting anything | K-Dense-AI/ | 348 | — | ~1.9k | Automated safety check: Pass | Unknown | 23 days ago |
| 40 | Applies the strategic frameworks and mental models of Anne Wojcicki, co-founder and CEO of 23andMe. | K-Dense-AI/ | 129 | — | ~1.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 41 | Create safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. | K-Dense-AI/ | 2.4k | 1 repo | ~3.7k | Automated safety check: Pass | MIT | 7 days ago |
| 42 | 42.Ncats Arax Queries the NCATS Translator ARAX production API for bounded, typed, provenance-rich one-hop and endpoint-pinned two-hop biomedical knowledge-graph relationships. | K-Dense-AI/ | 48k | 2 repos | ~2.3k | Automated safety check: Notes | MIT | 2 days ago |
| 43 | 43.Shap Explain and audit machine-learning predictions with SHAP. An agent skill from K-Dense-AI/scientific-agent-skills. | K-Dense-AI/ | 48k | 2 repos | ~4.1k | Automated safety check: Notes | MIT | 2 days ago |
| 44 | Converts neuroscience acquisition data to Neurodata Without Borders files with NeuroConv and PyNWB, preserves metadata and timebases, checks evidence-based clock alignment, and produces schema… | K-Dense-AI/ | 48k | 1 repo | ~1.9k | Automated safety check: Pass | MIT | 2 days ago |
| 45 | Think and work like an expert Biogeographer. An agent skill from K-Dense-AI/scientific-agents. | K-Dense-AI/ | 200 | — | ~4.8k | Automated safety check: Pass | MIT | 4 days ago |
| 46 | 46.Rowan Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. | K-Dense-AI/ | 48k | 3 repos | ~4.3k | Automated safety check: Pass | Proprietary | 2 days ago |
| 47 | 47.Markitdown Convert heterogeneous documents and selected URIs to Markdown with Microsoft MarkItDown for text analysis, search, and LLM/RAG ingestion. | K-Dense-AI/ | 2.4k | 1 repo | ~2.9k | Automated safety check: Pass | MIT | 7 days ago |
| 48 | A skill your agent uses when receiving critical feedback on an analysis or manuscript, before implementing suggestions, especially if feedback seems unclear or methodologically questionable -… | K-Dense-AI/ | 348 | — | ~1.3k | Automated safety check: Pass | Unknown | 23 days ago |
Questions, answered from the data.
What is the best skill by K-Dense-AI?
Citation Management from K-Dense-AI/claude-scientific-writer ranks first of the 278 skills by K-Dense-AI listed here, with the highest score: its repository has 2.4k GitHub stars, 2 other GitHub owners carry a copy, its SKILL.md loads about 3.9k tokens and it has informational notes only in the automated safety check. Next come Hypothesis Generation and Peer Review.
Are K-Dense-AI's skills official?
None yet. All 278 skills by K-Dense-AI listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.