Agent skill

Reference Verifier

by Yuan1z0825 in Yuan1z0825/nature-skills

Cross-checks each academic reference against several sources field by field, flags conflicts such as year, DOI, author order and page errors, and outputs a structured report.

Apache-2.0Auto-check passedResearch & Science

SKILL.md written in Chinese; this summary is our English description.

Install Reference Verifier

skills CLI
$ npx skills add Yuan1z0825/nature-skills --skill nature-ref-verifier -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install Yuan1z0825/nature-skills nature-ref-verifier --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/Yuan1z0825/nature-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/nature-ref-verifier .claude/skills/nature-ref-verifier && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
nature-ref-verifier
GitHub stars
47k
Used in
2 other repos
Token cost
~1.4k tokens
SKILL.md length
394 words
Files
6 (incl. references)
Skills in repo
23
Repo updated
First seen
Licence
Apache-2.0

At a glance

Cross-checks each academic reference against several sources field by field, flags conflicts such as year, DOI, author order and page errors, and outputs a structured report.

  • Works in 5 steps: 解析输入 → 多源并行查询 → 字段级对比 → …
  • Running a final reference check before submitting a paper or proposal
  • SKILL.md covers 触发词, 适用场景, 工作流 and 多来源交叉验证策略, plus 2 more sections
  • Reaches api.crossref.org

What it does

The skill accepts a whole paper or proposal reference list, a single pasted citation or Zotero item key, or a BibTeX file. Its cheapest first check queries Crossref for every reference that has a DOI: a 404 means the DOI itself is wrong, and a 200 is compared against the title, authors, volume and pages to catch DOIs that point at a different paper. Each reference is then looked up in parallel in Crossref, IEEE Xplore, web search, CNKI or Wanfang for Chinese literature, and a local Zotero library, using the DOI first and title plus author as the fallback.

Findings are graded in three levels. Critical covers wrong or reordered authors, missing authors, large page differences, confused article-number characters, mismatched core title words and DOIs that resolve to other papers. Warning covers a volume year that differs from the DOI year, metadata that changed after Early Access, missing issue numbers, small page drift and publisher name variants, and the third level is informational. Lists longer than 20 are split into groups of 10-15 for parallel subagents.

It suits a final check before submitting a paper or proposal, tracing citation errors a reviewer pointed out, migrating old reference lists and routine Zotero health checks. A common-patterns reference is read only for batch differences, recurring field errors and report wording. The skill text is written in Chinese.

When your agent uses it

  • Running a final reference check before submitting a paper or proposal
  • Locating citation errors that a reviewer flagged
  • Validating a BibTeX file migrated from an older project
  • Health-checking a Zotero library

Example prompts

  • “Verify the references in this BibTeX file and flag any DOI that points to a different paper.”
  • “Check this citation against Crossref and tell me which fields disagree.”
  • “Run a reference check on my proposal's list and give me a critical, warning and info report.”

Requirements

  • Network access to Crossref and other bibliographic sources
  • Zotero MCP access, optionally

Workflow steps

5 steps, taken from the step headings in SKILL.md.

  1. 解析输入
  2. 多源并行查询
  3. 字段级对比
  4. 置信度评估
  5. 输出报告

What it can do on your machine

Read from SKILL.md and the folder at commit e605b35. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md (its code samples are markdown).

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Hosts in commands or code, which the agent is likely to contact:

    • api.crossref.org

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Reference Verifier loads about 1.4k tokens when it runs, and up to ~2.3k if it reads all its reference files. Until then it costs about 35 tokens; SKILL.md has 394 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~35
When it runs · the whole SKILL.md, loaded when a task matches
~1.4k
With references · SKILL.md plus every file in references/, read only if the agent opens them
~2.3k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from Yuan1z0825/nature-skills at commit e605b35, republished under its Apache-2.0 licence (© Yuan1z0825). 394 words, ~1,431 tokens.

Download SKILL.mdSave it as .claude/skills/nature-ref-verifier/SKILL.md (or your agent's skills folder). This skill also uses 5 other files; get the full folder from GitHub.
name
nature-ref-verifier
description
对学术文献逐条执行多源交叉验证,逐字段对比作者、标题、年份、卷期、页码, 标记卷年/DOI年冲突、作者顺序异常、页码偏差等问题,输出结构化验证报告。 可批量处理整篇论文/开题报告的参考文献列表,也可单条校验,支持与 Zotero 同步修正。

nature-ref-verifier — 学术参考文献多源验证技能

需要处理批量差异、反复出现的字段错误、DOI/标题冲突、作者顺序异常、页码漂移或 报告措辞时,读取 references/common-patterns.md。其他任务不要预加载该文件; manifest.yaml 记录了同一按需路由,新增资源时必须同时在本文件中写明加载条件。

触发词

verify references、校验文献、check references、核对参考文献、文献验证、ref check

适用场景

  • 开题报告/论文提交前,对全部参考文献做最终核查
  • 收到审稿意见指出引用错误时,精准定位问题
  • 从旧项目迁移参考文献到新论文时,批量验证有效性
  • Zotero 库定期健康检查

工作流

Step 1: 解析输入

支持三种输入格式:

A. 整篇论文/开题报告

  • 提取所有 [N] 编号的参考文献列表
  • 自动识别每条的 DOI(如有)

B. 单条参考文献

  • 用户直接粘贴一条引用文本
  • 或传入 Zotero item key

C. BibTeX 文件

  • 直接解析 .bib,逐条校验
Step 2: 多源并行查询

Step 2.0(最便宜、最先做):DOI 可解析性检查。 对每条有 DOI 的文献先请求 https://api.crossref.org/works/<DOI>:404 → DOI 本身错误(高度疑似错号);200 → 比对返回记录的标题/作者/卷期页与条目,不一致即"DOI 张冠李戴"。单次请求即可发现实践中最常见的一类错误(一次 35 条核查中 7/9 的错误属于此类)。

对每条文献,并行查询以下来源(可用哪些取决于环境配置):

来源适用文献典型覆盖率
Crossref有 DOI 的外文期刊~70%(IEEE 老文献、中文期刊常有缺失)
IEEE XploreIEEE 期刊/会议IEEE DOI 404 时的备选
WebSearch (Bing/Google)无 DOI 或来源缺失的文献兜底方案
CNKI/万方 (kimi-datasource / webbridge)中文期刊、学位论文中文文献必查
Zotero 本地库 (zotero-mcp)已入库文献快速比对已有数据

查询策略: 优先用 DOI 查 Crossref,失败后降级用标题+作者搜 Web。

批量策略: 超过 20 条时按 10–15 条一组拆给并行子代理,每组独立查询后汇总——35 条规模实测 3 个并行子代理即可在一次往返内完成,串行会慢一个数量级。

Step 3: 字段级对比

对每条文献执行以下对比矩阵,按严重程度分为三级:

🔴 Critical(必须修正)
检查项说明典型案例
作者姓名/顺序不一致第一作者不同、顺序颠倒、完全编造Smogavec→Leckebusch、Vainikainen→Mikhnev
作者漏人条目作者数少于出版方记录(常见于 5+ 作者文献只录前 3-4 人)TGRS 2019 PCA 文漏第 5 作者 Ge;TAES 2021 UAV 文漏第 5 作者 Kim
页码差异 ≥5页码完全不匹配Noon: 1309-1319→1444-1449
文章号字母误判文章号含字母被写成形近数字(T/7、l/1、O/0)SPIE 101880T 误作 1018807
标题核心词不一致非大小写/标点差异Iwasaki T→Wu K H、Zhang W→Zhu M H
DOI 指向不同论文DOI 存在但标题/作者不对应Abidi 1995: 10.1109/4.482157→10.1109/4.482187
DOI 张冠李戴DOI 可解析但解析到另一篇论文(比对标题作者即可发现)JAG 2017 SVD 文 DOI 指向同卷 ERT 论文;AST 2022 旋翼文 DOI 指向涡轮噪声论文
🟡 Warning(建议核对)
检查项说明典型案例
卷年 ≠ DOI 年卷归属年份与 DOI 编号年不一致Dadrass 卷2025/上线2024、Ni 卷2022/DOI含2020
Early Access 元数据漂移IEEE 等期刊 Early Access 转正式出版后卷/期/页/年会变化,以 CrossRef 现值为准TGRS autoencoder 文 59(12):10437-10449,2021 → 60:1-13,2022
作者中间名缺失/多余"Rabiner L" vs "Rabiner L R"一般不影响检索
期号缺失脚本有卷无期Smogavec 2025: 17→17(10)
页码偏差 ≤4细微差异Leckebusch 15-24→15-25
出版社名写法差异"IET" vs "IEE"历史名称变更
Show full SKILL.md (161 more words)Show less
🟢 Info(仅供参考)
检查项说明
标题大小写不同Title Case vs Sentence case
期刊名缩写 vs 全称"IEEE Trans. AES" vs "IEEE Transactions on Aerospace and Electronic Systems"
标点/连接词差异"and" vs "&" 等
Step 4: 置信度评估

每条文献最终给出一个综合置信度:

等级含义
✅ Verified多源一致,无需修改
⚠️ Check suggested存在 🟡 级差异,需人工判断
❌ Needs fix存在 🔴 级差异,必须更正
❓ Unverifiable所有来源均无法查到(如内部报告、老旧学位论文)
Step 5: 输出报告

支持以下输出格式:

Markdown 摘要报告:

markdown
## 验证结果:56 条文献

- ✅ Verified: 42
- ⚠️ Check suggested: 8
- ❌ Needs fix: 4
- ❓ Unverifiable: 2

### ❌ 必须修正
| # | 问题 | 当前值 | 正确值 | 来源 |
|---|------|--------|--------|------|
| [6] | 作者错误 | Smogavec P | Leckebusch J | Wiley |
| [42] | 作者顺序颠倒 | Vainikainen P… | Mikhnev V A… | IEEE |

### ⚠️ 建议核对
| # | 问题 | 详情 |
|---|------|------|
| [18] | 卷年/DOI年不一致 | 卷年2025,DOI年2024 |

BibTeX Patch: 直接生成修正后的 .bib 文件内容。

Zotero 更新指令: 生成修正指令列表,用于批量修正 Zotero 库。注意写入路径的限制(2026 年实测):

  • Zotero 7 本地 HTTP API(localhost:23119)只读——写操作返回 501,zotero-mcp 类集成不稳定多源于此层包装或 Zotero 繁忙,直连 curl 加 --max-time 探测即可判断;
  • 批量写入首选 pyzotero Web 模式(需 userID + API key,全功能 CRUD,自带 429 退避);
  • 无 key 时可用本地 /connector/saveItems 端点新增条目(不能改已有条目);
  • 直接改 zotero.sqlite 仅在 Zotero 关闭后可行,且需手工维护多表关联与版本号,仅作最后手段;
  • 修正前先确认条目在库:按标题检索为空则说明 bib 另有来源(如文献管理 CSV),Zotero 侧无需修正。

多来源交叉验证策略

text
                   ┌─────────────┐
                   │  用户输入    │
                   │  DOI/标题   │
                   └──────┬──────┘
                          │
                          ▼
                   ┌─────────────┐
                   │  字段拆分    │
                   │ author/title │
                   │ year/vol/pg │
                   └──────┬──────┘
                          │
           ┌──────────────┼──────────────┐
           ▼              ▼              ▼
    ┌──────────┐   ┌──────────┐   ┌──────────┐
    │ CrossRef │   │  IEEE   │   │ WebSearch│
    │  (DOI)  │   │ Xplore  │   │ (Bing/GG)│
    └────┬─────┘   └────┬─────┘   └────┬─────┘
         │              │              │
         ▼              ▼              ▼
    ┌──────────────────────────────────────┐
    │       字段级对比 + 差异评级          │
    │  author / title / year / vol / issue │
    │       pages / DOI / journal          │
    └────────────────┬─────────────────────┘
                     │
                     ▼
            ┌────────────────┐
            │  置信度评估     │
            │ ✅ ⚠️ ❌ ❓    │
            └────────────────┘

已知局限与应对

局限应对
中文 DOI 不在 Crossref 中降级到 CNKI/万方(通过 webbridge 或 WebSearch)
IEEE 老文献 DOI 返回 404用 IEEE Xplore 直接搜(其 DOI 不在 Crossref 注册)
学位论文无 DOI用 CNKI / 万方 / ProQuest 验证标题+作者+年份
产品手册/专利不验证元数据,只确认来源可访问
谷歌学术搜不到部分文献切换搜索引擎(Bing、百度学术、Semantic Scholar)

环境依赖

以下工具为可选,有则启用、无则降级:

  • pyzotero[cli]:推荐的 Zotero 读写通道(本地只读 + Web 读写双模式,CLI 可直接被 agent 以 Bash 调用,无常驻进程)
  • zotero-cli / zotero-mcp:Zotero 库读写(本地包装层,实测稳定性较差)
  • kimi-datasource(scholar):学术搜索
  • kimi-webbridge:带登录态的 CNKI 查询
  • 基础 WebSearch / FetchURL:通用兜底

© Yuan1z0825, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

SKILL.md and 5 other files (references) in skills/nature-ref-verifier of Yuan1z0825/nature-skills.

  • SKILL.md
  • README.md
  • README_EN.md
  • agents/openai.yaml
  • manifest.yaml
  • references/common-patterns.md

Open the folder on GitHubat commit e605b35

Used in 2 other repositories

We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 2 other GitHub owners. This page covers the copy in Yuan1z0825/nature-skills, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Reference Verifier next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Reference Verifier compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Reference Verifier this skillYuan1z0825/nature-skills47k2 repos~1.4kAutomated safety check: PassApache-2.0
Citation Verification GuideGalaxy-Dawn/claude-scholar5.7k2 repos~1.9kAutomated safety check: PassMIT
Zoterocongcongwang0122/zotero-skill200—~1.6kAutomated safety check: PassNone
Bib Search Citationbahayonghang/academic-writing-skills500—~2.3kAutomated safety check: PassNone
Citation VerificationLight0305/Light-skills640—~3.4kAutomated safety check: PassMIT
Zotero Taxonomy Curatorganzoth/zotero-taxonomy-curator160—~2.3kAutomated safety check: PassMIT

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Works with

Questions about Reference Verifier

What does Reference Verifier do?

Cross-checks each academic reference against several sources field by field, flags conflicts such as year, DOI, author order and page errors, and outputs a structured report. The skill accepts a whole paper or proposal reference list, a single pasted citation or Zotero item key, or a BibTeX file. Its cheapest first check queries Crossref for every reference that has a DOI: a 404 means the DOI itself is wrong, and a 200 is compared against the title, authors, volume and pages to catch DOIs that point at a different paper.

When should I use Reference Verifier?

Reference Verifier fits situations like: running a final reference check before submitting a paper or proposal; locating citation errors that a reviewer flagged; validating a BibTeX file migrated from an older project; health-checking a Zotero library.

How do I install Reference Verifier in Claude Code?

Run `npx skills add Yuan1z0825/nature-skills --skill nature-ref-verifier -a claude-code`. Or copy the skill folder (skills/nature-ref-verifier in Yuan1z0825/nature-skills) into .claude/skills/nature-ref-verifier in your project. Claude Code loads it when a task matches its description.

How do I install Reference Verifier in Codex?

Run `npx skills add Yuan1z0825/nature-skills --skill nature-ref-verifier -a codex`. Or copy the skill folder (skills/nature-ref-verifier in Yuan1z0825/nature-skills) into .agents/skills/nature-ref-verifier in your project. Codex loads it when a task matches its description.

Can I use Reference Verifier in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add Yuan1z0825/nature-skills --skill nature-ref-verifier -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/nature-ref-verifier, .gemini/skills/nature-ref-verifier, .github/skills/nature-ref-verifier and .opencode/skills/nature-ref-verifier in your project.

What does Reference Verifier need to run?

SKILL.md names no scripts, command-line tools or credentials: Reference Verifier is instructions for the agent only. Our summary lists: Network access to Crossref and other bibliographic sources; Zotero MCP access, optionally.

Does Reference Verifier access the network?

SKILL.md names 1 domain. In commands or code: api.crossref.org; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.

Is Reference Verifier safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Reference Verifier use?

Reference Verifier is published under the Apache-2.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Reference Verifier use?

About 1.4k tokens (SKILL.md is roughly 5.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 906 tokens, read only when the agent opens those files.

What are the alternatives to Reference Verifier?

Skills that share tags, products or a category with Reference Verifier: Citation Verification Guide (Galaxy-Dawn/claude-scholar, 5.7k stars), Zotero (congcongwang0122/zotero-skill, 200 stars), Bib Search Citation (bahayonghang/academic-writing-skills, 500 stars) and Citation Verification (Light0305/Light-skills, 640 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Reference Verifier?

Yuan1z0825 (a GitHub user) maintains it in Yuan1z0825/nature-skills, which has 47,222 GitHub stars. The repository holds 23 skills in this directory. The repository was last updated on October 11, 2026.

Source: Yuan1z0825/nature-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.