Scarf Single Cell
NygenAnalytics/scarf
Analyze single-cell data with core Scarf, the out-of-core Zarr DataStore library with immutable artifacts and pipeline runs.
BPX level command skill. An agent skill from wilddogjp/openbpx.
$ npx skills add wilddogjp/openbpx --skill bpx-level -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install wilddogjp/openbpx bpx-level --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/wilddogjp/openbpx.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bpx-level .claude/skills/bpx-level && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bpx-level" agent skill from https://github.com/wilddogjp/openbpx/tree/main/skills/bpx-level into .claude/skills/bpx-level/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bpx-level", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/wilddogjp/openbpx/tree/main/skills/bpx-levelType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add wilddogjp/openbpx --skill bpx-level -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install wilddogjp/openbpx bpx-level --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wilddogjp/openbpx.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bpx-level .agents/skills/bpx-level && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bpx-level" agent skill from https://github.com/wilddogjp/openbpx/tree/main/skills/bpx-level into .agents/skills/bpx-level/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bpx-level", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wilddogjp/openbpx --skill bpx-level -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install wilddogjp/openbpx bpx-level --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wilddogjp/openbpx.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bpx-level .cursor/skills/bpx-level && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bpx-level" agent skill from https://github.com/wilddogjp/openbpx/tree/main/skills/bpx-level into .cursor/skills/bpx-level/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bpx-level", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/wilddogjp/openbpx.git --path skills/bpx-level--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add wilddogjp/openbpx --skill bpx-level -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install wilddogjp/openbpx bpx-level --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wilddogjp/openbpx.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bpx-level .gemini/skills/bpx-level && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bpx-level" agent skill from https://github.com/wilddogjp/openbpx/tree/main/skills/bpx-level into .gemini/skills/bpx-level/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bpx-level", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install wilddogjp/openbpx bpx-levelInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add wilddogjp/openbpx --skill bpx-level -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/wilddogjp/openbpx.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bpx-level .github/skills/bpx-level && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bpx-level" agent skill from https://github.com/wilddogjp/openbpx/tree/main/skills/bpx-level into .github/skills/bpx-level/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bpx-level", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wilddogjp/openbpx --skill bpx-level -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install wilddogjp/openbpx bpx-level --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wilddogjp/openbpx.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bpx-level .opencode/skills/bpx-level && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bpx-level" agent skill from https://github.com/wilddogjp/openbpx/tree/main/skills/bpx-level into .opencode/skills/bpx-level/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bpx-level", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
bpx-levelBPX level command skill. An agent skill from wilddogjp/openbpx.
Bpx Level is an agent skill from wilddogjp/openbpx. BPX level command skill. Inspect level exports and read/write actor properties in .umap.
Its SKILL.md is about 550 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science. It works with UMAP. The repository describes itself as: OpenBPX: Blueprint Toolkit for Unreal Engine. The licence is Apache-2.0.
Read from SKILL.md and the folder at commit 1508eb3. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are bash).
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Bpx Level loads about 547 tokens when it runs. Until then it costs about 25 tokens; SKILL.md has 139 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from wilddogjp/openbpx at commit 1508eb3, republished under its Apache-2.0 licence (© wilddogjp). 139 words, ~547 tokens.
.claude/skills/bpx-level/SKILL.md (or your agent's skills folder).PREREQUISITE: Read bpx-shared.
bpx level info <file.umap> --export <n>
bpx level actor-search <file.umap> [--name <token>] [--actor-label <token>] [--actor-class <token>] [--limit <n>]
bpx level var-list <file.umap> --actor <name|PersistentLevel.Name|export-index>
bpx level var-set <file.umap> --actor <name|PersistentLevel.Name|export-index> --path <dot.path> --value '<json>' [--dry-run] [--backup]info: inspects one level export.actor-search: filters PersistentLevel child exports by name/ActorLabel/ActorClass tokens.var-list: decodes actor properties selected by --actor.var-set: updates one actor property at --path.--actor accepts object name, PersistentLevel.<Name>, or export index.[!CAUTION] This command includes write-capable operations. Confirm intent and run
--dry-runfirst.
| Command | Use when | Notable defaults |
|---|---|---|
info | inspects one level export. | Read-only path; safe for discovery. |
actor-search | filters PersistentLevel child exports by name/ActorLabel/ActorClass tokens. | Check bpx help for exact required flags. |
var-list | decodes actor properties selected by --actor. | Check bpx help for exact required flags. |
var-set | updates one actor property at --path. | Run --dry-run first and use --backup for real writes. |
--actor resolution supports name, PersistentLevel.<Name>, or export index.var-set uses property path semantics; use var-list to validate target paths first.bpx level info ./Sample.umap --export 1
bpx level actor-search ./Sample.umap [--name SampleToken] [--actor-label SampleToken] [--actor-class SampleToken] [--limit 1]
bpx level var-list ./Sample.umap --actor <name|PersistentLevel.Name|export-index>
bpx level var-set ./Sample.umap --actor <name|PersistentLevel.Name|export-index> --path MyProperty --value '{"value":1}' [--dry-run] [--backup]© wilddogjp, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in skills/bpx-level of wilddogjp/openbpx.
Open the folder on GitHubat commit 1508eb3
Bpx Level next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bpx Level this skillwilddogjp/openbpx | 101 | — | ~547 | Automated safety check: Pass | Apache-2.0 | |
| Scarf Single CellNygenAnalytics/scarf | 126 | — | ~5.6k | Automated safety check: Pass | BSD-3-Clause | |
| ScanpyK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~5.1k | Automated safety check: Pass | BSD-3-Clause | |
| Spatial S2 Normalize ClusterQING1105/ezST | 101 | — | ~428 | Automated safety check: Pass | MIT | |
| Umap Tsne Analysisaipoch/medical-research-skills | 2k | — | ~2.7k | Automated safety check: Pass | MIT | |
| Bio Single Cell ClusteringGPTomics/bioSkills | 1.2k | 1 repos | ~3.5k | Automated safety check: Pass | MIT |
NygenAnalytics/scarf
Analyze single-cell data with core Scarf, the out-of-core Zarr DataStore library with immutable artifacts and pipeline runs.
K-Dense-AI/scientific-agent-skills
Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or…
QING1105/ezST
Stage 2 of the spatial transcriptomics workflow — normalize 10x Visium data and cluster spatial spots.
aipoch/medical-research-skills
A skill your agent uses when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE…
GPTomics/bioSkills
Dimensionality reduction and graph-based clustering for single-cell RNA-seq with Scanpy (Python) and Seurat (R).
GPTomics/bioSkills
Plots spatial transcriptomics expression, clusters, and annotations on tissue using Squidpy and Scanpy.
wilddogjp/openbpx
BPX widget construction and inspection skill. An agent skill from wilddogjp/openbpx.
wilddogjp/openbpx
BPX blueprint command skill. An agent skill from wilddogjp/openbpx.
wilddogjp/openbpx
BPX datatable command skill. An agent skill from wilddogjp/openbpx.
wilddogjp/openbpx
BPX import command skill. An agent skill from wilddogjp/openbpx.
wilddogjp/openbpx
BPX localization command skill. An agent skill from wilddogjp/openbpx.
wilddogjp/openbpx
BPX metadata command skill. An agent skill from wilddogjp/openbpx.
Works with
Categories
BPX level command skill. An agent skill from wilddogjp/openbpx. Bpx Level is an agent skill from wilddogjp/openbpx. BPX level command skill.
Bpx Level fits situations like: research & Science work in your project.
Run `npx skills add wilddogjp/openbpx --skill bpx-level -a claude-code`. Or copy the skill folder (skills/bpx-level in wilddogjp/openbpx) into .claude/skills/bpx-level in your project. Claude Code loads it when a task matches its description.
Run `npx skills add wilddogjp/openbpx --skill bpx-level -a codex`. Or copy the skill folder (skills/bpx-level in wilddogjp/openbpx) into .agents/skills/bpx-level in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wilddogjp/openbpx --skill bpx-level -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bpx-level, .gemini/skills/bpx-level, .github/skills/bpx-level and .opencode/skills/bpx-level in your project.
SKILL.md names no scripts, command-line tools or credentials: Bpx Level is instructions for the agent only.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Bpx Level is published under the Apache-2.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 547 tokens (SKILL.md is roughly 2.2k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Bpx Level: Scarf Single Cell (NygenAnalytics/scarf, 126 stars), Scanpy (K-Dense-AI/scientific-agent-skills, 48k stars), Spatial S2 Normalize Cluster (QING1105/ezST, 101 stars) and Umap Tsne Analysis (aipoch/medical-research-skills, 2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
wilddogjp (a GitHub organization) maintains it in wilddogjp/openbpx, which has 101 GitHub stars. The repository holds 20 skills in this directory. The repository was last updated on June 19, 2026.
Source: wilddogjp/openbpx on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.