Bio Single Cell Hashing Demultiplexing
GPTomics/bioSkills
Assign cells to their sample of origin from cell or nucleus hashing (CITE-seq HTOs, MULTI-seq lipid/cholesterol tags, CellPlex CMOs) and call cross-sample doublets using Seurat…
A skill your agent uses when 需要初始化目标产品仓库的 Nucleus V2 资产、只读检查、候选产物、审批后写入和结果证据。
$ npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install protect-my-hair/nucleus-marketplace target-repo-setup --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/protect-my-hair/nucleus-marketplace.git skills-src && mkdir -p .claude/skills && cp -r skills-src/plugins/nucleus/skills/target-repo-setup .claude/skills/target-repo-setup && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "target-repo-setup" agent skill from https://github.com/protect-my-hair/nucleus-marketplace/tree/main/plugins/nucleus/skills/target-repo-setup into .claude/skills/target-repo-setup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "target-repo-setup", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/protect-my-hair/nucleus-marketplace/tree/main/plugins/nucleus/skills/target-repo-setupType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install protect-my-hair/nucleus-marketplace target-repo-setup --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/protect-my-hair/nucleus-marketplace.git skills-src && mkdir -p .agents/skills && cp -r skills-src/plugins/nucleus/skills/target-repo-setup .agents/skills/target-repo-setup && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "target-repo-setup" agent skill from https://github.com/protect-my-hair/nucleus-marketplace/tree/main/plugins/nucleus/skills/target-repo-setup into .agents/skills/target-repo-setup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "target-repo-setup", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install protect-my-hair/nucleus-marketplace target-repo-setup --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/protect-my-hair/nucleus-marketplace.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/plugins/nucleus/skills/target-repo-setup .cursor/skills/target-repo-setup && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "target-repo-setup" agent skill from https://github.com/protect-my-hair/nucleus-marketplace/tree/main/plugins/nucleus/skills/target-repo-setup into .cursor/skills/target-repo-setup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "target-repo-setup", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/protect-my-hair/nucleus-marketplace.git --path plugins/nucleus/skills/target-repo-setup--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install protect-my-hair/nucleus-marketplace target-repo-setup --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/protect-my-hair/nucleus-marketplace.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/plugins/nucleus/skills/target-repo-setup .gemini/skills/target-repo-setup && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "target-repo-setup" agent skill from https://github.com/protect-my-hair/nucleus-marketplace/tree/main/plugins/nucleus/skills/target-repo-setup into .gemini/skills/target-repo-setup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "target-repo-setup", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install protect-my-hair/nucleus-marketplace target-repo-setupInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/protect-my-hair/nucleus-marketplace.git skills-src && mkdir -p .github/skills && cp -r skills-src/plugins/nucleus/skills/target-repo-setup .github/skills/target-repo-setup && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "target-repo-setup" agent skill from https://github.com/protect-my-hair/nucleus-marketplace/tree/main/plugins/nucleus/skills/target-repo-setup into .github/skills/target-repo-setup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "target-repo-setup", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install protect-my-hair/nucleus-marketplace target-repo-setup --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/protect-my-hair/nucleus-marketplace.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/plugins/nucleus/skills/target-repo-setup .opencode/skills/target-repo-setup && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "target-repo-setup" agent skill from https://github.com/protect-my-hair/nucleus-marketplace/tree/main/plugins/nucleus/skills/target-repo-setup into .opencode/skills/target-repo-setup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "target-repo-setup", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
target-repo-setupA skill your agent uses when 需要初始化目标产品仓库的 Nucleus V2 资产、只读检查、候选产物、审批后写入和结果证据。
Target Repo Setup is an agent skill from protect-my-hair/nucleus-marketplace. Use when 需要初始化目标产品仓库的 Nucleus V2 资产、只读检查、候选产物、审批后写入和结果证据。
Its SKILL.md is about 760 tokens, which your agent loads only when the skill is triggered. The skill folder holds 22 other files, including scripts, reference files and assets (for example `agents/openai.yaml`, `assets/docs-specs-readme-template.md` and `assets/feature-leaf-template.md`).
The repository describes itself as: Nucleus — Claude Code / Codex 工作流插件,确保 AI 编码产出结构可信、边界可审计、过程可追溯. The licence is MIT.
7 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 3c82085. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships 1 file in scripts/, which the agent can run.
Shell commands in SKILL.md call:
python3From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Target Repo Setup loads about 763 tokens when it runs, and up to ~6k if it reads all its reference files. Until then it costs about 19 tokens; SKILL.md has 184 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
The full file from protect-my-hair/nucleus-marketplace at commit 3c82085, republished under its MIT licence (© protect-my-hair). 184 words, ~763 tokens.
.claude/skills/target-repo-setup/SKILL.md (or your agent's skills folder). This skill also uses 19 other files; get the full folder from GitHub.用于目标产品仓库的 Nucleus V2 初始化。它是 Skill package 入口,确定性本地能力由 scripts/target_repo_setup.py 的显式子命令执行。人读说明先使用中文动作;CLI 子命令、JSON 字段和 approval scope 保持英文机器契约。
run-preflight),原始报告写到目标仓库外部。normalize-preflight);未审批时只写 .nucleus/runs/<workflowRunId>/**。docs/specs/** 规范模板候选和模板候选产物(build-plan、check-boundary、build-candidates)。build-result):先读 .nucleus/runs/<workflowRunId>/summary.md,机器事实源仍是 .nucleus/runs/<workflowRunId>/result.json。NEEDS_HUMAN_REVIEW;只有审批事实有效时,才能写 AGENTS.md 的 Nucleus 管理规则块、允许目录和缺失的默认 docs/specs/** 规范模板。$host-tool-setup;本 Skill 的成功不代表宿主工具可用。运行结束后必须先读 .nucleus/runs/<workflowRunId>/summary.md 和 result.json,再按 references/human-interaction.md 输出结论。最终回复不能只列状态(status)、检查项(gate)或工具状态;必须明确“已经完成什么、还没有做什么、需要用户决定什么、下一步怎么做”。
到达 setup plan review 或 template candidate review 前,必须按 workflow 的 subagentPreReview 调度独立 reviewer 子代理;未取得“材料可提交人工审查”预审结论时,不得请求人工审批或评审通过。
运行 python3 scripts/target_repo_setup.py list-subcommands 查看完整能力。当前实现:
run-preflight、normalize-preflight、build-plan、check-boundary、build-candidates、build-result。resolve-approval、write-managed-block、init-assets。promote-feature-skeleton、promote-test-skeleton。SKILL.md、scripts/、references/、assets/ 是 Claude Code / Codex 共享的 Skill 主体。agents/openai.yaml 只是 Codex-only optional metadata;Claude Code 不应依赖它执行本 Skill。.nucleus/**,测试过程证据路径是 .nucleus/tests/**。docs/specs/**;初始化只在 init-assets 审批后写缺失的默认规则模板,已有文件不覆盖,后续补充必须走目标仓库评审。docs/features/** 和 tests/**,且必须经过 review gate。docs/requirement/** 是受保护需求事实源;普通 setup 和普通开发不得写。.autocode/**、.claude/notepads/**、docs/bugfix/**。命中时登记风险并阻塞确认。references/workflow-contract.md。references/repo-asset-boundaries.md。references/managed-block.md。references/approval-and-result.md。references/blocker-matrix.md。references/terminology.md。references/human-interaction.md。assets/ 取,不把 asset 当作已批准正式写入。必须 ALERT_AND_BLOCK:
plannedWrites 越界,或计划写 legacy risk path。setup-plan-review.subagentPreReview 且材料可提交人工审查的预审结论,或缺少后续人工审批事实,却要写 AGENTS.md、CLAUDE.md、docs/features/** 或 tests/**。© protect-my-hair, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 19 other files (scripts, references, assets) in plugins/nucleus/skills/target-repo-setup of protect-my-hair/nucleus-marketplace.
Open the folder on GitHubat commit 3c82085
Target Repo Setup next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Target Repo Setup this skillprotect-my-hair/nucleus-marketplace | 164 | — | ~763 | Automated safety check: Pass | MIT | |
| Bio Single Cell Hashing DemultiplexingGPTomics/bioSkills | 1.2k | 1 repos | ~4.2k | Automated safety check: Pass | MIT | |
| Bio Single Cell Cnv InferenceGPTomics/bioSkills | 1.2k | 1 repos | ~4.7k | Automated safety check: Pass | MIT | |
| Scenario Maya Fxscenario-labs/skills | 946 | — | ~5.3k | Automated safety check: Pass | MIT | |
| Cellpose Cell Segmentationjaechang-hits/SciAgent-Skills | 374 | 1 repos | ~3.5k | Automated safety check: Pass | BSD-3-Clause | |
| Game Concept ArchitectDY-2026/GameDesignOS | 415 | — | ~2.1k | Automated safety check: Pass | MIT |
GPTomics/bioSkills
Assign cells to their sample of origin from cell or nucleus hashing (CITE-seq HTOs, MULTI-seq lipid/cholesterol tags, CellPlex CMOs) and call cross-sample doublets using Seurat…
GPTomics/bioSkills
Infer large-scale copy-number alterations from tumor single-cell or single-nucleus RNA-seq to separate malignant from normal cells and call subclones, using inferCNV, copyKAT, Numbat, and SCEVAN.
scenario-labs/skills
A skill your agent uses when a Maya task involves simulation or procedural effects: nCloth or Nucleus (a cape, skirt, flag or garment on an animated character, cloth through the body, jittery or…
jaechang-hits/SciAgent-Skills
DL cell/nucleus segmentation for fluorescence and brightfield microscopy.
DY-2026/GameDesignOS
将一句话游戏创意扩展为可验证的游戏设计蓝图:从 concept seed、玩家动词、design nucleus options、动作-目标对齐、assumption ledger、玩家承诺、核心循环、scope gate 到 validation plan。适用于真实项目、私有项目、客户项目、公开案例或 synthetic cases;仓库示例发布规则由 CONTRIBUTING.md 管理。
yogthos/Matryoshka
Analyze large files (500 lines) using handle-based Nucleus queries for 97% token savings.
protect-my-hair/nucleus-marketplace
Collects prior Nucleus task evidence into a candidate-only delivery closure package and PR/MR draft text, blocking if any feature's design, review or verification evidence is missing.
protect-my-hair/nucleus-marketplace
Validates the context file for a Nucleus V2 workflow run, discovers standalone context from explicit input, and writes a blocked result when required context is missing.
protect-my-hair/nucleus-marketplace
Collects, freezes and validates a Nucleus V2 session binding report that records the native Claude Code or Codex session ID, transcript path and hash.
protect-my-hair/nucleus-marketplace
Builds the result.json file for a Nucleus V2 workflow run from its context, gates, blockers and step status, and exits non-zero when the run is blocked.
protect-my-hair/nucleus-marketplace
Checks whether a defect report has enough context to be accepted, then drafts candidate-only root-cause evidence for human review without confirming causes or changing code.
protect-my-hair/nucleus-marketplace
Combines the evidence from completed Nucleus workflow steps into a final evidence report and result package, without scheduling steps, updating trackers or opening pull requests.
A skill your agent uses when 需要初始化目标产品仓库的 Nucleus V2 资产、只读检查、候选产物、审批后写入和结果证据。. Target Repo Setup is an agent skill from protect-my-hair/nucleus-marketplace.
Target Repo Setup fits situations like: 需要初始化目标产品仓库的 Nucleus V2 资产、只读检查、候选产物、审批后写入和结果证据.
Run `npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a claude-code`. Or copy the skill folder (plugins/nucleus/skills/target-repo-setup in protect-my-hair/nucleus-marketplace) into .claude/skills/target-repo-setup in your project. Claude Code loads it when a task matches its description.
Run `npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a codex`. Or copy the skill folder (plugins/nucleus/skills/target-repo-setup in protect-my-hair/nucleus-marketplace) into .agents/skills/target-repo-setup in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add protect-my-hair/nucleus-marketplace --skill target-repo-setup -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/target-repo-setup, .gemini/skills/target-repo-setup, .github/skills/target-repo-setup and .opencode/skills/target-repo-setup in your project.
Going by SKILL.md and its folder, Target Repo Setup needs the command-line tools its instructions call (python3). Our summary lists: Python 3.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
Target Repo Setup is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 763 tokens (SKILL.md is roughly 3.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 5.2k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Target Repo Setup: Bio Single Cell Hashing Demultiplexing (GPTomics/bioSkills, 1.2k stars), Bio Single Cell Cnv Inference (GPTomics/bioSkills, 1.2k stars), Scenario Maya Fx (scenario-labs/skills, 946 stars) and Cellpose Cell Segmentation (jaechang-hits/SciAgent-Skills, 374 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
protect-my-hair (a GitHub user) maintains it in protect-my-hair/nucleus-marketplace, which has 164 GitHub stars. The repository holds 18 skills in this directory. The repository was last updated on July 23, 2026.
Source: protect-my-hair/nucleus-marketplace on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.