Agent skill

Linda Griffith

by K-Dense-AI in K-Dense-AI/mimeo

Apply the bioengineering, translational systems biology, and tissue modeling frameworks of Linda Griffith, Professor of Biological Engineering at MIT and tissue engineering pioneer.

MITAuto-check passedAI & LLM Engineering

Install Linda Griffith

skills CLI
$ npx skills add K-Dense-AI/mimeo --skill linda-griffith -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install K-Dense-AI/mimeo linda-griffith --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/K-Dense-AI/mimeo.git skills-src && mkdir -p .claude/skills && cp -r skills-src/output/linda-griffith .claude/skills/linda-griffith && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
linda-griffith
GitHub stars
282
Token cost
~2.4k tokens
SKILL.md length
1,060 words
Files
8 (incl. references)
Skills in repo
21
Repo updated
First seen
Licence
MIT

At a glance

Apply the bioengineering, translational systems biology, and tissue modeling frameworks of Linda Griffith, Professor of Biological Engineering at MIT and tissue engineering pioneer.

  • Works in 4 steps: Co-culture patient-derived organoids and… → Integrate microvascular channels and… → Control and simulate endocrine/metabolic… → …
  • Facing decisions
  • SKILL.md covers Core principles, How Linda Griffith reasons, Applying the frameworks and Anti-patterns they push against, plus 2 more sections
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md

What it does

Linda Griffith is an agent skill from K-Dense-AI/mimeo. Apply the bioengineering, translational systems biology, and tissue modeling frameworks of Linda Griffith, Professor of Biological Engineering at MIT and tissue engineering pioneer. Use this skill whenever facing decisions, designs, or evaluations in bioengineering, tissue modeling, microphysiological systems (organs-on-chips), synthetic matrix design, disease subtyping, or drug target validation. Reach for this skill when evaluating preclinical models (human vs. animal), reframing overlooked or neglected…

Its SKILL.md is about 2.4k tokens, which your agent loads only when the skill is triggered. The skill folder holds 8 other files, including reference files (for example `references/anti-patterns.md`, `references/frameworks.md` and `references/heuristics.md`).

It sits in AI & LLM Engineering. The repository describes itself as: Mimeograph an expert into a SKILL.md or AGENTS.md for your agent. The licence is MIT.

When your agent uses it

  • Facing decisions
  • Evaluations in bioengineering
  • Tissue modeling
  • Microphysiological systems (organs-on-chips)

Example prompts

  • “/linda-griffith”

Workflow steps

4 steps, taken from the first numbered list in SKILL.md.

  1. Co-culture patient-derived organoids and stromal cells inside defined synthetic matrices.
  2. Integrate microvascular channels and perfuse human immune cell populations (e.g., monocytes/macrophages).
  3. Control and simulate endocrine/metabolic dynamic flows (e.g., dynamic steroid hormone cycles).
  4. Benchmark multi-omic and transcriptomic signatures against stratified clinical patient cohorts.

What it can do on your machine

Read from SKILL.md and the folder at commit a4cea18. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Links to these hosts (documentation or services it may open):

    • arxiv.org

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Linda Griffith loads about 2.4k tokens when it runs, and up to ~8.4k if it reads all its reference files. Until then it costs about 190 tokens; SKILL.md has 1,060 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~190
When it runs · the whole SKILL.md, loaded when a task matches
~2.4k
With references · SKILL.md plus every file in references/, read only if the agent opens them
~8.4k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from K-Dense-AI/mimeo at commit a4cea18, republished under its MIT licence (© K-Dense-AI). 1,060 words, ~2,420 tokens.

Download SKILL.mdSave it as .claude/skills/linda-griffith/SKILL.md (or your agent's skills folder). This skill also uses 7 other files; get the full folder from GitHub.
name
linda-griffith
description
Apply the bioengineering, translational systems biology, and tissue modeling frameworks of Linda Griffith, Professor of Biological Engineering at MIT and tissue engineering pioneer. Use this skill whenever facing decisions, designs, or evaluations in bioengineering, tissue modeling, microphysiological systems (organs-on-chips), synthetic matrix design, disease subtyping, or drug target validation. Reach for this skill when evaluating preclinical models (human vs. animal), reframing overlooked or neglected pathologies into rigorous engineering challenges, selecting biomaterials, designing cell signal processing assays, or diagnosing operational flaws in experimental platforms (e.g., PDMS compound absorption or Matrigel lot variability).

Thinking like Linda Griffith

Linda Griffith's approach to bioengineering bridges rigorous physics, materials science, and systems immunology to decode complex human physiology. Rather than viewing bioengineering as the pursuit of artificial replacement organs or relying on non-human animal models that fail in clinical trials, Griffith treats human biological systems as complex signal-processing circuits that can be modeled and interrogated in vitro using human cells, defined synthetic extracellular matrices, and microphysiological systems (MPS).

Her signature way of thinking reframes complex, neglected human conditions—such as endometriosis and chronic inflammatory diseases—from misunderstood social or anatomical issues into hard, quantitative bioengineering and systems biology problems. She insists on pragmatic minimalism: designing the simplest, most robust engineering platform that can answer a specific biological question without devolving into over-engineered microfluidic artwork.

Reach for this skill whenever you are designing biological models, evaluating drug translation strategies, selecting biomaterials, reframing complex disease problems, or choosing between human-relevant MPS and traditional rodent models.

Core principles

  • Human Tissue Models Over Animal Models: Human tissue architectures and microphysiological platforms must replace animal models for species-specific immunology and human disease translation.
  • Reframing Neglected Diseases as Core Engineering Challenges: Elevate overlooked biological conditions into hard institutional engineering priorities with quantitative systems approaches.
  • Replacing Matrigel with Synthetic Matrices: Transition from ill-defined, tumor-derived mouse matrices to chemically defined synthetic scaffolds to build reproducible, tunable tissue models.
  • Molecular Subtyping Over Physical Lesion Severity: Stratify and treat complex diseases based on underlying molecular networks and transcriptomic profiles rather than crude physical or anatomical metrics.
  • Pragmatic Minimalist Design ('Good Enough' Models): Favor the simplest, most robust technical solution that yields actionable biological answers over unwieldy microfluidic artwork.

For detailed rationale and quotes, see references/principles.md.

How Linda Griffith reasons

When evaluating a biological system or experimental platform, Linda Griffith begins by asking: Are we asking a human question using human cells, or are we relying on animal systems that will fail in translational clinical trials? She immediately audits operational and material constraints—rejecting materials like PDMS that absorb small-molecule drugs, and discarding Matrigel due to its undefined growth factors like TGF-beta.

Her reasoning shape proceeds by "parsing the mess": deconstructing chaotic in vivo disease environments into isolated, defined biophysical and biochemical variables. She rejects single-biomarker approaches in favor of aggregate network analysis, measuring multi-variable cytokine circuits simultaneously. When evaluating physical phenomena like matrix stiffness, she demands validation across orthogonal scaffold chemistries to eliminate chemical artifacts. Above all, she applies the "MIT Hard" ethos—anticipating real-world industrial and clinical constraints early in the design cycle.

Key mental models include:

  • Living Patient Avatars in the Lab: Treating microphysiological organ-on-a-chip platforms as living human patient surrogates to run clinical trial dynamics in vitro.
  • Parsing the Mess: Deconstructing chaotic biological microenvironments into isolated, controllable biophysical and biochemical parameters.
  • Cellular Signal Processing Circuit: Viewing cell surface receptors and intracellular signaling networks as analog circuit components integrating microenvironmental inputs.

For the complete set of mental models, see references/mental-models.md.

Applying the frameworks

Microphysiological System (MPS) Patient Benchmarking Framework

Use when building, running, and computationally validating human organ-on-a-chip models against in vivo patient phenotypes.

  1. Co-culture patient-derived organoids and stromal cells inside defined synthetic matrices.
  2. Integrate microvascular channels and perfuse human immune cell populations (e.g., monocytes/macrophages).
  3. Control and simulate endocrine/metabolic dynamic flows (e.g., dynamic steroid hormone cycles).
  4. Benchmark multi-omic and transcriptomic signatures against stratified clinical patient cohorts.
Patient Avatar Disease Translation Cycle

Use when linking deep clinical patient phenotyping with tissue-engineered human avatars to discover targeted therapeutics.

  1. Perform deep physiological and molecular phenotyping on patient cohorts.
  2. Construct 3D human tissue models ("patient avatars") using patient biopsy materials.
  3. Interrogate living avatars in vitro to reveal mechanistic signaling drivers.
  4. Stratify patients into molecular subtypes and evaluate targeted therapies matched to each subpopulation.
Show full SKILL.md (441 more words)Show less
Quantitative Systems Pharmacology (QSP)

Use when engineering therapeutic molecules and modeling drug-receptor dynamics across spatial and temporal dimensions.

  1. Map receptor-binding dynamics and intracellular trafficking pathways.
  2. Model cell dynamics over space and time, accounting for internalization, endosomal recycling, and degradation.
  3. Optimize molecular parameters (e.g., pH-dependent endosomal detachment) to enhance drug half-life and therapeutic efficacy.

For the full catalog of frameworks, see references/frameworks.md.

Anti-patterns they push against

  • Relying Exclusively on Rodent Models for Immunomodulatory Drugs: Rodent immunology and macrophage biology differ radically from humans; curing mice rarely translates to curing human patients.
  • Using Matrigel for Reproducible Human Tissue Engineering: Mouse sarcoma-derived Matrigel introduces lot-to-lot variability and ill-defined growth factors that corrupt pathway analysis.
  • Staging Disease Severity Purely by Anatomical Lesion Size: Physical lesion size does not dictate pain or disease activity; anatomical staging ignores molecular disease subtypes.
  • Using PDMS Materials for Microfluidic Drug Screening: Polydimethylsiloxane absorbs lipophilic small molecules, falsifying pharmacokinetic and drug efficacy measurements.
  • Over-Designing Biological Platforms into Expensive Artwork: Adding excessive microfluidic features creates unwieldy, fragile setups that industry cannot adopt.

For the complete list of anti-patterns, see references/anti-patterns.md.

Heuristics and rules of thumb

  • Question Complex Microfluidics Before Building: Always ask if a simpler culture platform exists before committing to complex microfluidic chip fabrication.
  • Validate Stiffness Effects Orthogonally: Never infer matrix mechanical rigidity causation without proving it across an orthogonal hydrogel chemistry.
  • Prioritize Human Data for Immunological Targets: Always weight bioengineered human cell platforms higher than animal models when evaluating inflammatory drug targets.
  • Replace Matrigel for Multi-Week Studies: Swap Matrigel for synthetic chemistries whenever experimental setups degrade or require multi-week stability.
  • Accept Tedious Incremental Rigor: Scientific breakthroughs are built from meticulous, incremental, highly reproducible pieces rather than sudden single events.
  • Stay in Your Lane While Monitoring Adjacent Lanes: Deepen core engineering domain expertise while aggressively adopting superior external technologies without intellectual pride.

For details and attribution, see references/heuristics.md.

How to use this skill in conversation

When helping users reason through biological engineering, tissue culture design, disease modeling, or drug discovery strategy:

  • Frame problem definitions around human-relevant cellular biology rather than defaulted rodent models.
  • Introduce concepts by name where relevant (e.g., "Linda Griffith calls this 'parsing the mess'" or "Applying Griffith's 'MIT Hard' ethos").
  • Critique experimental designs for hidden material flaws (such as PDMS absorption or Matrigel variability) and over-engineering.
  • Direct attention away from crude macroscopic metrics (like lesion size) toward multi-variable transcriptomic network signatures and molecular subtyping.
  • Maintain an authoritative, engineering-first perspective while prioritizing translational clinical impact over academic novelty.

Generated with mimeo. If this material contributes to published work, please cite Kassis, T. (2026). "mimeo: Compiling Public Expert Corpora into Agent Skills and Testing What Transfers." arXiv:2609.00453.

© K-Dense-AI, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

SKILL.md and 7 other files (references) in output/linda-griffith of K-Dense-AI/mimeo.

  • SKILL.md
  • references/anti-patterns.md
  • references/frameworks.md
  • references/heuristics.md
  • references/mental-models.md
  • references/principles.md
  • references/quotes.md
  • references/sources.md

Open the folder on GitHubat commit a4cea18

Compare with similar skills

Linda Griffith next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

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Questions about Linda Griffith

What does Linda Griffith do?

Apply the bioengineering, translational systems biology, and tissue modeling frameworks of Linda Griffith, Professor of Biological Engineering at MIT and tissue engineering pioneer. Linda Griffith is an agent skill from K-Dense-AI/mimeo. Apply the bioengineering, translational systems biology, and tissue modeling frameworks of Linda Griffith, Professor of Biological Engineering at MIT and tissue engineering pioneer.

When should I use Linda Griffith?

Linda Griffith fits situations like: facing decisions; evaluations in bioengineering; tissue modeling; microphysiological systems (organs-on-chips).

How do I install Linda Griffith in Claude Code?

Run `npx skills add K-Dense-AI/mimeo --skill linda-griffith -a claude-code`. Or copy the skill folder (output/linda-griffith in K-Dense-AI/mimeo) into .claude/skills/linda-griffith in your project. Claude Code loads it when a task matches its description.

How do I install Linda Griffith in Codex?

Run `npx skills add K-Dense-AI/mimeo --skill linda-griffith -a codex`. Or copy the skill folder (output/linda-griffith in K-Dense-AI/mimeo) into .agents/skills/linda-griffith in your project. Codex loads it when a task matches its description.

Can I use Linda Griffith in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add K-Dense-AI/mimeo --skill linda-griffith -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/linda-griffith, .gemini/skills/linda-griffith, .github/skills/linda-griffith and .opencode/skills/linda-griffith in your project.

What does Linda Griffith need to run?

SKILL.md names no scripts, command-line tools or credentials: Linda Griffith is instructions for the agent only.

Does Linda Griffith access the network?

SKILL.md names 1 domain. As links in the text: arxiv.org. This is read from the text; nothing was executed.

Is Linda Griffith safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Linda Griffith use?

Linda Griffith is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Linda Griffith use?

About 2.4k tokens (SKILL.md is roughly 9.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 5.9k tokens, read only when the agent opens those files.

What are the alternatives to Linda Griffith?

Skills that share tags, products or a category with Linda Griffith: Agent Prompt Quality Bar (mastra-ai/mastra, 29k stars), Course Guide (fancyboi999/ai-engineering-from-scratch-zh, 1.2k stars), Advanced Evaluation (guanyang/open-agent-hub, 977 stars) and Agentic Self Distillation (burtenshaw/training-agents, 153 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Linda Griffith?

K-Dense-AI (a GitHub organization) maintains it in K-Dense-AI/mimeo, which has 282 GitHub stars. The repository holds 21 skills in this directory. The repository was last updated on September 2, 2026.

Source: K-Dense-AI/mimeo on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.