Agent skill

J Brandon Dixon

by K-Dense-AI in K-Dense-AI/mimeo

Apply the bioengineering, mechanobiology, and lymphatic transport reasoning of J.

MITAuto-check passedAI & LLM Engineering

Install J Brandon Dixon

skills CLI
$ npx skills add K-Dense-AI/mimeo --skill j-brandon-dixon -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install K-Dense-AI/mimeo j-brandon-dixon --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/K-Dense-AI/mimeo.git skills-src && mkdir -p .claude/skills && cp -r skills-src/output/j-brandon-dixon .claude/skills/j-brandon-dixon && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
j-brandon-dixon
GitHub stars
282
Token cost
~2.4k tokens
SKILL.md length
1,056 words
Files
8 (incl. references)
Skills in repo
21
Repo updated
First seen
Licence
MIT

At a glance

Apply the bioengineering, mechanobiology, and lymphatic transport reasoning of J.

  • Works in 5 steps: Inject a non-perturbing near-infrared… → Place a dynamic occlusion cuff… → Inflate the cuff to a pressure exceeding… → …
  • Critique bioengineering assumptions
  • SKILL.md covers Core principles, How J. Brandon Dixon reasons, Applying the frameworks and Anti-patterns they push against, plus 2 more sections
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md

What it does

J Brandon Dixon is an agent skill from K-Dense-AI/mimeo. Apply the bioengineering, mechanobiology, and lymphatic transport reasoning of J. Brandon Dixon, professor of mechanical and biomedical engineering at Georgia Institute of Technology. Reach for this skill whenever analyzing lymphatic biomechanics, active vessel contractility versus passive drainage, peristaltic fluid transport, microfluidic organ-on-a-chip design, preclinical lymphedema models, non-invasive functional imaging, targeted nanomedicine delivery, or automated disease staging. Use this skill to…

Its SKILL.md is about 2.4k tokens, which your agent loads only when the skill is triggered. The skill folder holds 8 other files, including reference files (for example `references/anti-patterns.md`, `references/frameworks.md` and `references/heuristics.md`).

It sits in AI & LLM Engineering. The repository describes itself as: Mimeograph an expert into a SKILL.md or AGENTS.md for your agent. The licence is MIT.

When your agent uses it

  • Critique bioengineering assumptions
  • Guide quantitative protocol design
  • Evaluate biomechanical pump failure
  • Formulate interdisciplinary biomedical solutions

Example prompts

  • “/j-brandon-dixon”

Workflow steps

5 steps, taken from the first numbered list in SKILL.md.

  1. Inject a non-perturbing near-infrared (NIR) fluorescent tracer intradermally into the distal tissue bed.
  2. Place a dynamic occlusion cuff downstream over the target collecting vessel.
  3. Inflate the cuff to a pressure exceeding vessel systolic capability until fluorescence packet movement ceases.
  4. Deflate the cuff incrementally while recording dynamic NIR fluorescence.
  5. Identify the exact cuff pressure at which active contractile packets resume downstream transport.

What it can do on your machine

Read from SKILL.md and the folder at commit a4cea18. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Links to these hosts (documentation or services it may open):

    • arxiv.org

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

J Brandon Dixon loads about 2.4k tokens when it runs, and up to ~8.2k if it reads all its reference files. Until then it costs about 173 tokens; SKILL.md has 1,056 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~173
When it runs · the whole SKILL.md, loaded when a task matches
~2.4k
With references · SKILL.md plus every file in references/, read only if the agent opens them
~8.2k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from K-Dense-AI/mimeo at commit a4cea18, republished under its MIT licence (© K-Dense-AI). 1,056 words, ~2,382 tokens.

Download SKILL.mdSave it as .claude/skills/j-brandon-dixon/SKILL.md (or your agent's skills folder). This skill also uses 7 other files; get the full folder from GitHub.
name
j-brandon-dixon
description
Apply the bioengineering, mechanobiology, and lymphatic transport reasoning of J. Brandon Dixon, professor of mechanical and biomedical engineering at Georgia Institute of Technology. Reach for this skill whenever analyzing lymphatic biomechanics, active vessel contractility versus passive drainage, peristaltic fluid transport, microfluidic organ-on-a-chip design, preclinical lymphedema models, non-invasive functional imaging, targeted nanomedicine delivery, or automated disease staging. Use this skill to critique bioengineering assumptions, guide quantitative protocol design, evaluate biomechanical pump failure, and formulate interdisciplinary biomedical solutions.

Thinking like J. Brandon Dixon

J. Brandon Dixon's work operates at the intersection of biomechanics, fluid dynamics, cell biology, and microfluidics. Rather than viewing vascular systems as simple passive plumbing, Dixon frames self-pumping biological networks—specifically lymphatic collecting vessels—as dynamic, autonomous, cardiac-like muscle pumps. Central to his thinking is the realization that long-term pathological outcomes (such as secondary lymphedema following cancer surgery) stem from biomechanical compensation: intact vessels hyper-pump under elevated afterload, masking acute damage while accumulating oxidative stress, smooth muscle remodeling, and eventual pump failure.

To unravel these complex biofluidic systems, Dixon champions multi-scale engineering integration: coupling high-speed functional imaging, lumped-parameter computational modeling, microfluidic lymphatics-on-a-chip, and user-centered device design. He rigorously privileges active functional performance over static structural presence, demanding tools and models that quantify flow rate, occlusion pressure, and pump metrics rather than vessel counts or histology alone.

Reach for this skill whenever you are designing microfluidic devices, evaluating biofluidic or peristaltic transport systems, modeling vascular mechanobiology, framing preclinical animal disease models, or developing targeted biomedical diagnostics and therapeutics.

Core principles

  • Compensatory Hyper-Pumping Masks and Accelerates Pump Failure: Acute surgical or structural loss forces remaining intact vessels to increase contractile frequency and force; this short-term compensation induces long-term oxidative stress, smooth muscle remodeling, and delayed pump breakdown.
  • Integrate Multidisciplinary Engineering with Mechanobiology: Elucidating self-pumping vascular systems requires tightly coupling molecular biology, fluid biomechanics, high-speed dynamic imaging, computer signal processing, and computational modeling.
  • Measure Active Functional Transport, Not Static Architecture: Diagnostic and therapeutic success must be evaluated by dynamic pumping pressure, clearance velocity, and contractile mechanics rather than structural vessel presence or static staining.
  • Target Multiple Pathological Pathways Simultaneously: Chronic secondary diseases involving mechanical pump impairment, tissue fibrosis, and inflammation require combined therapeutics (e.g., pro-lymphangiogenic plus anti-inflammatory agents) rather than single-target magic bullets.
  • Design In Vitro Systems for Collaborative Simplicity: Bioengineering platforms and microfluidic microenvironments must be operationally simple enough for non-engineers to independently adopt and replicate.

For detailed rationale and verbatim quotes, see references/principles.md.

How J. Brandon Dixon reasons

When evaluating a biological or bioengineering problem, Dixon first asks: Is this an active pump or a passive drain, and what mechanical loads are the functional units experiencing? He rejects pure static structural observations, looking instead at the dynamic balance between fluid shear stress, transmural pressure, and active muscle recruitment.

His primary cognitive framework models lymphangions as chains of autonomous cardiac-like chambers subject to fatigue. When analyzing fluid mechanics in peristaltic systems, he focuses on valve-phase interactions and segmental compression, recognizing that asynchronous valve operation drastically changes volumetric flow. When building platforms, he balances physiological fidelity with operational usability, insisting that a microfluidic tool is useless if non-engineering collaborators cannot run it.

To explore these mental models in detail, see references/mental-models.md.

Applying the frameworks

Non-Invasive Lymphatic Occlusion Pressure Protocol

Use when quantifying active vessel pumping performance and functional pressure generation in vivo.

  1. Inject a non-perturbing near-infrared (NIR) fluorescent tracer intradermally into the distal tissue bed.
  2. Place a dynamic occlusion cuff downstream over the target collecting vessel.
  3. Inflate the cuff to a pressure exceeding vessel systolic capability until fluorescence packet movement ceases.
  4. Deflate the cuff incrementally while recording dynamic NIR fluorescence.
  5. Identify the exact cuff pressure at which active contractile packets resume downstream transport.
Longitudinal Volumetric and Functional Lymphedema Model

Use when evaluating disease progression or therapeutic efficacy in preclinical models.

  1. Implement a partial-injury surgical model (e.g., single-side vessel ligation) that preserves intact alternative pathways.
  2. Track external tissue swelling over time using non-invasive 3D surface scanning.
  3. Measure active transport metrics (contraction frequency, packet velocity, occlusion pressure) using NIR dynamic imaging.
  4. Correlate functional pump metrics with tissue-level histopathology (fibrosis, epidermal thickening, lipid deposition).
Show full SKILL.md (446 more words)Show less
Lumped Parameter Mechanobiological Adaptation Model

Use when computationally simulating vascular pump adaptation under altered mechanical loading.

  1. Represent lymphangion segments using lumped circuit parameters coupled with active contractile dynamics.
  2. Integrate short-term vasoreactive feedback driven by fluid wall shear stress.
  3. Apply constitutive growth equations driven by transmural pressure and circumferential stress to predict structural wall remodeling and pump failure.

For the complete computational and protocol details, see references/frameworks.md.

Anti-patterns they push against

  • Exclusively Using Complete Ablation/Ligation Animal Models: Completely severing all drainage pathways eliminates partial flow, altered pressure gradients, and hyper-pumping compensation seen in human patients.
  • Over-Engineering Bespoke Microfluidics: Building overly complex microfluidic chips that non-engineering biological collaborators cannot operate without expert assistance.
  • Treating NIR Tracers as Inert Molecules: Ignoring how diagnostic contrast dyes (e.g., ICG) can alter fluid load or temporarily suppress intrinsic vessel contractility.
  • Setting Integer Valve Spacing Ratios: Spacing valves at exact integer multiples of the contraction wavelength ($L = 1, 2$), which causes synchronous opening and eliminates volumetric pumping.
  • Evaluating Interventions Solely on Short-Term Recovery: Judging surgical or therapeutic success immediately post-injury, ignoring long-term mechanical strain that causes pump failure years later.

For the complete catalog with full rationale and quotes, see references/anti-patterns.md.

Heuristics and rules of thumb

  • The 2/3 Valve Spacing Rule: Set the ratio of inter-valve spacing to peristaltic contraction wavelength to approximately $2/3$ ($L \approx 0.67$) to maximize volumetric pumping efficiency.
  • The Early Intervention Window: Apply pump-enhancing therapeutics while tissue swelling is mild ($<25%$) before irreversible fibrosis and smooth muscle fatigue develop.
  • The Non-Engineer Adoption Test: If a biological collaborator cannot independently run your microfluidic device after one demonstration, simplify the design.
  • Tracer Volume Control: Keep intradermal tracer injection volumes minimal to avoid artificially inducing elevated pressure or contractility artifacts.

For additional heuristics and source attribution, see references/heuristics.md.

How to use this skill in conversation

When assisting with bioengineering, mechanobiology, or diagnostic design problems:

  • Frame functional failure through biomechanical adaptation: Explain how early hyper-pumping or compensation can hide progressive cellular fatigue and structural failure.
  • Focus on dynamic functional metrics over static images: Direct users to measure flow velocity, occlusion pressure, or contractile frequency rather than relying purely on vessel counts or histological staining.
  • Critique over-complicated devices: Push back on microfluidic or experimental designs that trade operational robustness for unnecessary complexity.
  • Cite Dixon's models directly: Refer explicitly to Dixon's concepts (e.g., "J. Brandon Dixon's concept of the lymphatic vessel as an intrinsic cardiac-like pump" or "Dixon's 2/3 valve spacing ratio for peristaltic pumping"). Do not impersonate him—apply his principles with analytical rigor.

Generated with mimeo. If this material contributes to published work, please cite Kassis, T. (2026). "mimeo: Compiling Public Expert Corpora into Agent Skills and Testing What Transfers." arXiv:2609.00453.

© K-Dense-AI, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

SKILL.md and 7 other files (references) in output/j-brandon-dixon of K-Dense-AI/mimeo.

  • SKILL.md
  • references/anti-patterns.md
  • references/frameworks.md
  • references/heuristics.md
  • references/mental-models.md
  • references/principles.md
  • references/quotes.md
  • references/sources.md

Open the folder on GitHubat commit a4cea18

Compare with similar skills

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Questions about J Brandon Dixon

What does J Brandon Dixon do?

Apply the bioengineering, mechanobiology, and lymphatic transport reasoning of J. J Brandon Dixon is an agent skill from K-Dense-AI/mimeo. Apply the bioengineering, mechanobiology, and lymphatic transport reasoning of J.

When should I use J Brandon Dixon?

J Brandon Dixon fits situations like: critique bioengineering assumptions; guide quantitative protocol design; evaluate biomechanical pump failure; formulate interdisciplinary biomedical solutions.

How do I install J Brandon Dixon in Claude Code?

Run `npx skills add K-Dense-AI/mimeo --skill j-brandon-dixon -a claude-code`. Or copy the skill folder (output/j-brandon-dixon in K-Dense-AI/mimeo) into .claude/skills/j-brandon-dixon in your project. Claude Code loads it when a task matches its description.

How do I install J Brandon Dixon in Codex?

Run `npx skills add K-Dense-AI/mimeo --skill j-brandon-dixon -a codex`. Or copy the skill folder (output/j-brandon-dixon in K-Dense-AI/mimeo) into .agents/skills/j-brandon-dixon in your project. Codex loads it when a task matches its description.

Can I use J Brandon Dixon in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add K-Dense-AI/mimeo --skill j-brandon-dixon -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/j-brandon-dixon, .gemini/skills/j-brandon-dixon, .github/skills/j-brandon-dixon and .opencode/skills/j-brandon-dixon in your project.

What does J Brandon Dixon need to run?

SKILL.md names no scripts, command-line tools or credentials: J Brandon Dixon is instructions for the agent only.

Does J Brandon Dixon access the network?

SKILL.md names 1 domain. As links in the text: arxiv.org. This is read from the text; nothing was executed.

Is J Brandon Dixon safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does J Brandon Dixon use?

J Brandon Dixon is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does J Brandon Dixon use?

About 2.4k tokens (SKILL.md is roughly 9.5k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 5.8k tokens, read only when the agent opens those files.

What are the alternatives to J Brandon Dixon?

Skills that share tags, products or a category with J Brandon Dixon: Agent Prompt Quality Bar (mastra-ai/mastra, 29k stars), Course Guide (fancyboi999/ai-engineering-from-scratch-zh, 1.2k stars), Advanced Evaluation (guanyang/open-agent-hub, 977 stars) and Agentic Self Distillation (burtenshaw/training-agents, 153 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains J Brandon Dixon?

K-Dense-AI (a GitHub organization) maintains it in K-Dense-AI/mimeo, which has 282 GitHub stars. The repository holds 21 skills in this directory. The repository was last updated on September 2, 2026.

Source: K-Dense-AI/mimeo on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.