Instrument Data To Allotrope
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV.
Systematic Python debugging workflow for spreadsheet tasks to isolate environment issues from script logic
$ npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install HKUDS/OpenSpace python-spreadsheet-debug --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .claude/skills && cp -r skills-src/benchmarks/gdpval/skills/python-spreadsheet-debug .claude/skills/python-spreadsheet-debug && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "python-spreadsheet-debug" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/python-spreadsheet-debug into .claude/skills/python-spreadsheet-debug/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "python-spreadsheet-debug", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/python-spreadsheet-debugType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install HKUDS/OpenSpace python-spreadsheet-debug --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .agents/skills && cp -r skills-src/benchmarks/gdpval/skills/python-spreadsheet-debug .agents/skills/python-spreadsheet-debug && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "python-spreadsheet-debug" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/python-spreadsheet-debug into .agents/skills/python-spreadsheet-debug/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "python-spreadsheet-debug", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install HKUDS/OpenSpace python-spreadsheet-debug --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/benchmarks/gdpval/skills/python-spreadsheet-debug .cursor/skills/python-spreadsheet-debug && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "python-spreadsheet-debug" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/python-spreadsheet-debug into .cursor/skills/python-spreadsheet-debug/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "python-spreadsheet-debug", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/HKUDS/OpenSpace.git --path benchmarks/gdpval/skills/python-spreadsheet-debug--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install HKUDS/OpenSpace python-spreadsheet-debug --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/benchmarks/gdpval/skills/python-spreadsheet-debug .gemini/skills/python-spreadsheet-debug && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "python-spreadsheet-debug" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/python-spreadsheet-debug into .gemini/skills/python-spreadsheet-debug/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "python-spreadsheet-debug", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install HKUDS/OpenSpace python-spreadsheet-debugInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .github/skills && cp -r skills-src/benchmarks/gdpval/skills/python-spreadsheet-debug .github/skills/python-spreadsheet-debug && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "python-spreadsheet-debug" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/python-spreadsheet-debug into .github/skills/python-spreadsheet-debug/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "python-spreadsheet-debug", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install HKUDS/OpenSpace python-spreadsheet-debug --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/benchmarks/gdpval/skills/python-spreadsheet-debug .opencode/skills/python-spreadsheet-debug && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "python-spreadsheet-debug" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/python-spreadsheet-debug into .opencode/skills/python-spreadsheet-debug/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "python-spreadsheet-debug", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
python-spreadsheet-debugSystematic Python debugging workflow for spreadsheet tasks to isolate environment issues from script logic
Python Spreadsheet Debug is an agent skill from HKUDS/OpenSpace. Systematic Python debugging workflow for spreadsheet tasks to isolate environment issues from script logic
Its SKILL.md is about 860 tokens, which your agent loads only when the skill is triggered. The skill folder holds 1 other file.
It sits in Documents & Office, covering Excel spreadsheets and Debugging. It works with Python. The repository describes itself as: "OpenSpace: The Skill Management Layer for AI Agents" -- https://open-space.cloud/. The licence is MIT.
4 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 3827781. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
pythonpippython3From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Python Spreadsheet Debug loads about 860 tokens when it runs. Until then it costs about 33 tokens; SKILL.md has 296 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from HKUDS/OpenSpace at commit 3827781, republished under its MIT licence (© HKUDS). 296 words, ~860 tokens.
.claude/skills/python-spreadsheet-debug/SKILL.md (or your agent's skills folder). This skill also uses 1 other file; get the full folder from GitHub.When executing Python scripts for spreadsheet/data processing tasks, use this systematic debugging approach to efficiently isolate environment configuration issues from script logic errors, especially when run_shell returns opaque errors.
First, confirm the Python interpreter path and version to ensure you're working in the expected environment:
which python python3
python --version
python3 --versionThis identifies whether Python is available and which version is being used.
Before running your full script, verify that required libraries can be imported successfully. Test each critical import individually:
python -c "import pandas; print('pandas:', pandas.__version__)"
python -c "import openpyxl; print('openpyxl:', openpyxl.__version__)"
python -c "import xlrd; print('xlrd:', xlrd.__version__)"Replace library names based on your script's requirements. This identifies missing dependencies or version conflicts early.
Create and execute a minimal script that exercises only the core functionality without full business logic:
# test_minimal.py
import pandas as pd
# Test 1: Can we read a file?
try:
df = pd.read_excel('sample.xlsx')
print(f"✓ File read successful: {len(df)} rows")
except Exception as e:
print(f"✗ File read failed: {e}")
# Test 2: Can we perform basic operations?
try:
result = df.groupby('category')['amount'].sum()
print(f"✓ GroupBy operation successful")
except Exception as e:
print(f"✗ Operation failed: {e}")Run this with: python test_minimal.py
Purpose: This isolates whether the issue is with file access, library functionality, or specific script logic.
Once the minimal test passes, run the complete script:
python your_script.pyIf errors occur now, you know the environment is correctly configured and can focus on debugging the specific logic.
For rapid diagnosis, run all checks in sequence:
echo "=== Python Version ===" && python --version && \
echo "=== Key Imports ===" && python -c "import pandas, openpyxl; print('OK')" && \
echo "=== Ready for full script ==="| Symptom | Likely Cause | Resolution |
|---|---|---|
ModuleNotFoundError | Missing package | pip install <package-name> |
ImportError with version | Version conflict | Check pip list, reinstall specific version |
FileNotFoundError | Wrong path/context | Verify working directory with pwd |
PermissionError | File access | Check file permissions or path |
run_shell returns cryptic or truncated error messages© HKUDS, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 1 other file in benchmarks/gdpval/skills/python-spreadsheet-debug of HKUDS/OpenSpace.
Open the folder on GitHubat commit 3827781
Python Spreadsheet Debug next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Python Spreadsheet Debug this skillHKUDS/OpenSpace | 7.7k | — | ~860 | Automated safety check: Pass | MIT | |
| Instrument Data To Allotropeaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | 2 repos | ~2.7k | Automated safety check: Pass | Apache-2.0 | |
| Doc Cleanernotoriouslab/doc-cleaner | 309 | — | ~712 | Automated safety check: Pass | MIT | |
| MineruNebutra/MinerU-Skill | 122 | — | ~504 | Automated safety check: Pass | MIT | |
| XLSXzzhonglei/GeoCode-Release | 186 | — | ~3.1k | Automated safety check: Pass | MIT | |
| Python Bridgetmustier/pi-for-excel | 434 | — | ~820 | Automated safety check: Pass | MIT |
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV.
notoriouslab/doc-cleaner
Convert PDF, DOCX, XLSX, and text files to clean, structured Markdown.
Nebutra/MinerU-Skill
An AI-Native skill for parsing PDF / Office / image files into Markdown with MinerU — a fast, zero-config document parser for AI agents.
zzhonglei/GeoCode-Release
Create, edit, analyze, or convert Excel spreadsheets (.xlsx, .xlsm) where the workbook file is the primary deliverable.
tmustier/pi-for-excel
Native Python execution via the local Python bridge. An agent skill from tmustier/pi-for-excel.
shuyu-labs/WebCode
Convert Office documents (Word, Excel, PowerPoint, PDF) to Markdown format.
HKUDS/OpenSpace
Walks through producing a master audio track plus stems in Python, from checking a reference file and timing sections by BPM to effects, a zip archive and final verification.
HKUDS/OpenSpace
Handle cascading data retrieval tool failures by falling back to embedded knowledge generation
HKUDS/OpenSpace
Gives an agent a workaround when its code-execution sandbox keeps failing: save the Python script to a file and run it through the shell instead.
HKUDS/OpenSpace
A recovery routine for agents whose sandboxed code runner keeps failing: save the Python script to disk, then run it through the shell and read the output.
HKUDS/OpenSpace
Fallback ladder for failed sandboxed code runs, plus the habit of fixing the working directory first so generated files land in the right place.
HKUDS/OpenSpace
Fallback workflow for executing Python code when executecodesandbox fails repeatedly
Works with
Categories
Systematic Python debugging workflow for spreadsheet tasks to isolate environment issues from script logic. Python Spreadsheet Debug is an agent skill from HKUDS/OpenSpace.
Python Spreadsheet Debug fits situations like: tasks that involve Excel spreadsheets; tasks that involve Debugging.
Run `npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a claude-code`. Or copy the skill folder (benchmarks/gdpval/skills/python-spreadsheet-debug in HKUDS/OpenSpace) into .claude/skills/python-spreadsheet-debug in your project. Claude Code loads it when a task matches its description.
Run `npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a codex`. Or copy the skill folder (benchmarks/gdpval/skills/python-spreadsheet-debug in HKUDS/OpenSpace) into .agents/skills/python-spreadsheet-debug in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add HKUDS/OpenSpace --skill python-spreadsheet-debug -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/python-spreadsheet-debug, .gemini/skills/python-spreadsheet-debug, .github/skills/python-spreadsheet-debug and .opencode/skills/python-spreadsheet-debug in your project.
Going by SKILL.md and its folder, Python Spreadsheet Debug needs the command-line tools its instructions call (python, pip and python3). Our summary lists: Python 3.
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Python Spreadsheet Debug is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 860 tokens (SKILL.md is roughly 3.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Python Spreadsheet Debug: Instrument Data To Allotrope (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars), Doc Cleaner (notoriouslab/doc-cleaner, 309 stars), Mineru (Nebutra/MinerU-Skill, 122 stars) and XLSX (zzhonglei/GeoCode-Release, 186 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
HKUDS (a GitHub organization) maintains it in HKUDS/OpenSpace, which has 7,743 GitHub stars. The repository holds 199 skills in this directory. The repository was last updated on August 12, 2026.
Source: HKUDS/OpenSpace on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.