Instrument Data To Allotrope
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV.
Verify PDF page count and content using command-line tools when Python libraries unavailable
$ npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install HKUDS/OpenSpace pdf-verification-cli --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .claude/skills && cp -r skills-src/benchmarks/gdpval/skills/pdf-verification-cli .claude/skills/pdf-verification-cli && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "pdf-verification-cli" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/pdf-verification-cli into .claude/skills/pdf-verification-cli/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pdf-verification-cli", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/pdf-verification-cliType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install HKUDS/OpenSpace pdf-verification-cli --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .agents/skills && cp -r skills-src/benchmarks/gdpval/skills/pdf-verification-cli .agents/skills/pdf-verification-cli && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "pdf-verification-cli" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/pdf-verification-cli into .agents/skills/pdf-verification-cli/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pdf-verification-cli", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install HKUDS/OpenSpace pdf-verification-cli --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/benchmarks/gdpval/skills/pdf-verification-cli .cursor/skills/pdf-verification-cli && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "pdf-verification-cli" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/pdf-verification-cli into .cursor/skills/pdf-verification-cli/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pdf-verification-cli", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/HKUDS/OpenSpace.git --path benchmarks/gdpval/skills/pdf-verification-cli--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install HKUDS/OpenSpace pdf-verification-cli --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/benchmarks/gdpval/skills/pdf-verification-cli .gemini/skills/pdf-verification-cli && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "pdf-verification-cli" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/pdf-verification-cli into .gemini/skills/pdf-verification-cli/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pdf-verification-cli", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install HKUDS/OpenSpace pdf-verification-cliInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .github/skills && cp -r skills-src/benchmarks/gdpval/skills/pdf-verification-cli .github/skills/pdf-verification-cli && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "pdf-verification-cli" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/pdf-verification-cli into .github/skills/pdf-verification-cli/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pdf-verification-cli", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install HKUDS/OpenSpace pdf-verification-cli --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/HKUDS/OpenSpace.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/benchmarks/gdpval/skills/pdf-verification-cli .opencode/skills/pdf-verification-cli && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "pdf-verification-cli" agent skill from https://github.com/HKUDS/OpenSpace/tree/main/benchmarks/gdpval/skills/pdf-verification-cli into .opencode/skills/pdf-verification-cli/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pdf-verification-cli", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
pdf-verification-cliVerify PDF page count and content using command-line tools when Python libraries unavailable
PDF Verification CLI is an agent skill from HKUDS/OpenSpace. Verify PDF page count and content using command-line tools when Python libraries unavailable
Its SKILL.md is about 1.3k tokens, which your agent loads only when the skill is triggered. The skill folder holds 1 other file.
It sits in Documents & Office, covering PDF. It works with Python. The repository describes itself as: "OpenSpace: The Skill Management Layer for AI Agents" -- https://open-space.cloud/. The licence is MIT.
6 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 3827781. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
pdftotextapt-getyumdnfbrewFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
PDF Verification CLI loads about 1.3k tokens when it runs. Until then it costs about 28 tokens; SKILL.md has 312 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from HKUDS/OpenSpace at commit 3827781, republished under its MIT licence (© HKUDS). 312 words, ~1,283 tokens.
.claude/skills/pdf-verification-cli/SKILL.md (or your agent's skills folder). This skill also uses 1 other file; get the full folder from GitHub.When verifying PDF files during task execution, Python libraries like PyPDF2 may not be available in the environment. This skill provides a reliable alternative using standard command-line tools from the poppler-utils package.
pdfinfo - Extract PDF MetadataUse pdfinfo to get page count and other metadata:
# Get full PDF info
pdfinfo document.pdf
# Get only page count
pdfinfo document.pdf | grep Pages
# Extract page count as a number
pdfinfo document.pdf | grep Pages | awk '{print $2}'Key metadata fields:
Pages: Number of pages in the PDFTitle: Document titleAuthor: Document authorCreator: Application that created the PDFProducer: Application that processed the PDFCreationDate: When the PDF was createdModDate: Last modification datepdftotext - Extract Text ContentUse pdftotext to inspect the actual content of the PDF:
# Extract all text to stdout
pdftotext document.pdf -
# Extract text to a file
pdftotext document.pdf output.txt
# Extract text from specific page range
pdftotext -f 1 -l 3 document.pdf output.txt
# Preserve layout (rough formatting)
pdftotext -layout document.pdf output.txt# Check if tools are installed
which pdfinfo
which pdftotext
# Or test with --help
pdfinfo --help 2>&1 | head -1# Debian/Ubuntu
apt-get update && apt-get install -y poppler-utils
# RHEL/CentOS/Fedora
yum install -y poppler-utils
# or
dnf install -y poppler-utils
# macOS (with Homebrew)
brew install poppler# Verify page count matches expected
EXPECTED_PAGES=4
ACTUAL_PAGES=$(pdfinfo document.pdf | grep Pages | awk '{print $2}')
if [ "$ACTUAL_PAGES" -eq "$EXPECTED_PAGES" ]; then
echo "✓ Page count verified: $ACTUAL_PAGES pages"
else
echo "✗ Page count mismatch: expected $EXPECTED_PAGES, got $ACTUAL_PAGES"
fi# Check for required sections/content
pdftotext document.pdf - | grep -i "checklist" && echo "✓ Contains checklist section"
pdftotext document.pdf - | grep -i "references" && echo "✓ Contains references section"
# Count occurrences of key terms
pdftotext document.pdf - | grep -ci "assessment" # Case-insensitive countimport subprocess
def get_pdf_page_count(pdf_path):
"""Get page count using pdfinfo"""
result = subprocess.run(
['pdfinfo', pdf_path],
capture_output=True,
text=True
)
for line in result.stdout.split('\n'):
if line.startswith('Pages:'):
return int(line.split(':')[1].strip())
return None
def extract_pdf_text(pdf_path):
"""Extract all text from PDF using pdftotext"""
result = subprocess.run(
['pdftotext', pdf_path, '-'],
capture_output=True,
text=True
)
return result.stdout
def verify_pdf(pdf_path, expected_pages, required_terms):
"""Verify PDF has expected page count and contains required terms"""
# Check page count
pages = get_pdf_page_count(pdf_path)
if pages != expected_pages:
return False, f"Expected {expected_pages} pages, got {pages}"
# Check content
text = extract_pdf_text(pdf_path).lower()
missing = [term for term in required_terms if term.lower() not in text]
if missing:
return False, f"Missing terms: {missing}"
return True, "PDF verification passed"| Task | Command |
|---|---|
| Count pages | pdfinfo file.pdf | grep Pages |
| Check if PDF has text | pdftotext file.pdf - | head -5 |
| Search for keyword | pdftotext file.pdf - | grep -i "keyword" |
| Extract first page | pdftotext -f 1 -l 1 file.pdf out.txt |
| Get PDF title | pdfinfo file.pdf | grep Title |
pdfinfo: command not found
pdftotext returns empty output
pdftotext -layout for better text extractionPage count seems wrong
pdftotext to see actual content per page© HKUDS, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 1 other file in benchmarks/gdpval/skills/pdf-verification-cli of HKUDS/OpenSpace.
Open the folder on GitHubat commit 3827781
PDF Verification CLI next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| PDF Verification CLI this skillHKUDS/OpenSpace | 7.7k | — | ~1.3k | Automated safety check: Pass | MIT | |
| Instrument Data To Allotropeaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | 2 repos | ~2.7k | Automated safety check: Pass | Apache-2.0 | |
| Software Certificate SkillIvanCodesDev/software-certificate-skill | 156 | — | ~1.6k | Automated safety check: Pass | MIT | |
| Doc Cleanernotoriouslab/doc-cleaner | 309 | — | ~712 | Automated safety check: Pass | MIT | |
| MineruNebutra/MinerU-Skill | 122 | — | ~504 | Automated safety check: Pass | MIT | |
| Office To Mdshuyu-labs/WebCode | 278 | — | ~1k | Automated safety check: Notes | Custom licence |
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV.
IvanCodesDev/software-certificate-skill
面向普通用户,从真实软件项目全自动生成中国软件著作权申请资料:一次收集登记事实,自动分析业务、选择可追溯源码、取得真实界面证据,生成申请表信息、规范黑白灰操作手册、代码前后30页或全部材料及真实 DOCX/PDF;内部验证、渲染、哈希与备份只进入系统临时运行区,项目最终仅保留正式资料。适配 Codex、Claude…
notoriouslab/doc-cleaner
Convert PDF, DOCX, XLSX, and text files to clean, structured Markdown.
Nebutra/MinerU-Skill
An AI-Native skill for parsing PDF / Office / image files into Markdown with MinerU — a fast, zero-config document parser for AI agents.
shuyu-labs/WebCode
Convert Office documents (Word, Excel, PowerPoint, PDF) to Markdown format.
doccker/cc-use-exp
当实现用户驱动的大文件导出或批量序列化(Excel/CSV/JSON/JSONL/PDF,数据量未知或超过 1 万行/10 MB)时触发;普通小文件下载、静态资源下载、非导出 Writer/Report 类不触发。防止 OOM、临时文件残留、同步导出阻塞 HTTP 线程和表格公式注入。
HKUDS/OpenSpace
Walks through producing a master audio track plus stems in Python, from checking a reference file and timing sections by BPM to effects, a zip archive and final verification.
HKUDS/OpenSpace
Handle cascading data retrieval tool failures by falling back to embedded knowledge generation
HKUDS/OpenSpace
Gives an agent a workaround when its code-execution sandbox keeps failing: save the Python script to a file and run it through the shell instead.
HKUDS/OpenSpace
A recovery routine for agents whose sandboxed code runner keeps failing: save the Python script to disk, then run it through the shell and read the output.
HKUDS/OpenSpace
Fallback ladder for failed sandboxed code runs, plus the habit of fixing the working directory first so generated files land in the right place.
HKUDS/OpenSpace
Fallback workflow for executing Python code when executecodesandbox fails repeatedly
Works with
Categories
Verify PDF page count and content using command-line tools when Python libraries unavailable. PDF Verification CLI is an agent skill from HKUDS/OpenSpace.
PDF Verification CLI fits situations like: tasks that involve PDF.
Run `npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a claude-code`. Or copy the skill folder (benchmarks/gdpval/skills/pdf-verification-cli in HKUDS/OpenSpace) into .claude/skills/pdf-verification-cli in your project. Claude Code loads it when a task matches its description.
Run `npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a codex`. Or copy the skill folder (benchmarks/gdpval/skills/pdf-verification-cli in HKUDS/OpenSpace) into .agents/skills/pdf-verification-cli in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add HKUDS/OpenSpace --skill pdf-verification-cli -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/pdf-verification-cli, .gemini/skills/pdf-verification-cli, .github/skills/pdf-verification-cli and .opencode/skills/pdf-verification-cli in your project.
Going by SKILL.md and its folder, PDF Verification CLI needs the command-line tools its instructions call (pdftotext, apt-get, yum, dnf and brew). Our summary lists: Python 3.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
PDF Verification CLI is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.3k tokens (SKILL.md is roughly 5.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with PDF Verification CLI: Instrument Data To Allotrope (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars), Software Certificate Skill (IvanCodesDev/software-certificate-skill, 156 stars), Doc Cleaner (notoriouslab/doc-cleaner, 309 stars) and Mineru (Nebutra/MinerU-Skill, 122 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
HKUDS (a GitHub organization) maintains it in HKUDS/OpenSpace, which has 7,743 GitHub stars. The repository holds 199 skills in this directory. The repository was last updated on August 12, 2026.
Source: HKUDS/OpenSpace on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.