String Database
davila7/claude-code-templates
Query STRING API for protein-protein interactions (59M proteins, 20B interactions).
Agent skill
String Protein Interaction Analysis With Omicverse
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
No licenceAuto-check passed
Install String Protein Interaction Analysis With Omicverse
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills string-protein-interaction-analysis-with-omicverse --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bulk-stringdb-ppi .claude/skills/string-protein-interaction-analysis-with-omicverse && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "string-protein-interaction-analysis-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bulk-stringdb-ppi into .claude/skills/string-protein-interaction-analysis-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "string-protein-interaction-analysis-with-omicverse", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bulk-stringdb-ppiType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills string-protein-interaction-analysis-with-omicverse --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bulk-stringdb-ppi .agents/skills/string-protein-interaction-analysis-with-omicverse && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "string-protein-interaction-analysis-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bulk-stringdb-ppi into .agents/skills/string-protein-interaction-analysis-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "string-protein-interaction-analysis-with-omicverse", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills string-protein-interaction-analysis-with-omicverse --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bulk-stringdb-ppi .cursor/skills/string-protein-interaction-analysis-with-omicverse && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "string-protein-interaction-analysis-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bulk-stringdb-ppi into .cursor/skills/string-protein-interaction-analysis-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "string-protein-interaction-analysis-with-omicverse", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bulk-stringdb-ppi--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills string-protein-interaction-analysis-with-omicverse --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bulk-stringdb-ppi .gemini/skills/string-protein-interaction-analysis-with-omicverse && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "string-protein-interaction-analysis-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bulk-stringdb-ppi into .gemini/skills/string-protein-interaction-analysis-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "string-protein-interaction-analysis-with-omicverse", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills string-protein-interaction-analysis-with-omicverseInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bulk-stringdb-ppi .github/skills/string-protein-interaction-analysis-with-omicverse && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "string-protein-interaction-analysis-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bulk-stringdb-ppi into .github/skills/string-protein-interaction-analysis-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "string-protein-interaction-analysis-with-omicverse", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills string-protein-interaction-analysis-with-omicverse --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bulk-stringdb-ppi .opencode/skills/string-protein-interaction-analysis-with-omicverse && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "string-protein-interaction-analysis-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bulk-stringdb-ppi into .opencode/skills/string-protein-interaction-analysis-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "string-protein-interaction-analysis-with-omicverse", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
string-protein-interaction-analysis-with-omicverse- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~749 tokens
- SKILL.md length
- 309 words
- Files
- 2
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
- Works in 3 steps: Set up libraries → Collect gene inputs → Assign metadata for plotting
- SKILL.md covers Overview, Instructions, Examples and References
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
What it does
String Protein Interaction Analysis With Omicverse is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
Its SKILL.md is about 750 tokens, which your agent loads only when the skill is triggered. The skill folder holds 1 other file (for example `reference.md`).
The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
Example prompts
- “/string-protein-interaction-analysis-with-omicverse”
Workflow steps
3 steps, taken from the first numbered list in SKILL.md.
- Set up libraries
- Collect gene inputs
- Assign metadata for plotting
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
Links to these hosts (documentation or services it may open):
string-db.org
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
String Protein Interaction Analysis With Omicverse loads about 749 tokens when it runs. Until then it costs about 46 tokens; SKILL.md has 309 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 309 words (~749 tokens).
“Invoke this skill when the user has a list of genes and wants to explore STRING protein–protein interactions via omicverse. The workflow mirrors t_network.ipynb, covering species selection, S TRING API queries, and quick visualisation of the resulting network.”
- name
- string-protein-interaction-analysis-with-omicverse
- title
- STRING protein interaction analysis with omicverse
Files
SKILL.md and 1 other file in skills/bulk-stringdb-ppi of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- reference.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.
Compare with similar skills
String Protein Interaction Analysis With Omicverse next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| String Protein Interaction Analysis With Omicverse this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~749 | Automated safety check: Pass | None | |
| String Databasedavila7/claude-code-templates | 33k | 10 repos | ~4.5k | Automated safety check: Pass | MIT | |
| String Databaseaipoch/medical-research-skills | 1.9k | — | ~928 | Automated safety check: Pass | MIT | |
| String Database Ppijaechang-hits/SciAgent-Skills | 374 | 1 repos | ~4.2k | Automated safety check: Pass | CC-BY-4.0 | |
| Translation Stringsthedaviddias/Front-End-Checklist | 74k | — | ~494 | Automated safety check: Pass | MIT | |
| Protein Interactionslamm-mit/scienceclaw | 246 | — | ~3.8k | Automated safety check: Notes | Apache-2.0 |
Similar skills
String Database
aipoch/medical-research-skills
Access the STRING database to map identifiers, retrieve protein–protein interaction networks, and run functional/PPI enrichment when you need interaction context for a gene/protein set.
String Database Ppi
jaechang-hits/SciAgent-Skills
Query STRING REST API for PPIs (59M proteins, 20B interactions, 5000+ species).
Translation Strings
thedaviddias/Front-End-Checklist
A skill your agent uses when reviewing a codebase for internationalisation readiness, setting up an i18n library, or preparing strings for a new locale.
Protein Interactions
lamm-mit/scienceclaw
ToolUniverse workflow — Protein Interactions. An agent skill from lamm-mit/scienceclaw.
String Database
google-deepmind/science-skills
Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology.
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Questions about String Protein Interaction Analysis With Omicverse
What does String Protein Interaction Analysis With Omicverse do?
Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists. String Protein Interaction Analysis With Omicverse is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
How do I install String Protein Interaction Analysis With Omicverse in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a claude-code`. Or copy the skill folder (skills/bulk-stringdb-ppi in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/string-protein-interaction-analysis-with-omicverse in your project. Claude Code loads it when a task matches its description.
How do I install String Protein Interaction Analysis With Omicverse in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a codex`. Or copy the skill folder (skills/bulk-stringdb-ppi in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/string-protein-interaction-analysis-with-omicverse in your project. Codex loads it when a task matches its description.
Can I use String Protein Interaction Analysis With Omicverse in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill string-protein-interaction-analysis-with-omicverse -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/string-protein-interaction-analysis-with-omicverse, .gemini/skills/string-protein-interaction-analysis-with-omicverse, .github/skills/string-protein-interaction-analysis-with-omicverse and .opencode/skills/string-protein-interaction-analysis-with-omicverse in your project.
What does String Protein Interaction Analysis With Omicverse need to run?
SKILL.md names no scripts, command-line tools or credentials: String Protein Interaction Analysis With Omicverse is instructions for the agent only.
Does String Protein Interaction Analysis With Omicverse access the network?
SKILL.md names 1 domain. As links in the text: string-db.org. This is read from the text; nothing was executed.
Is String Protein Interaction Analysis With Omicverse safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does String Protein Interaction Analysis With Omicverse use?
No licence was found for String Protein Interaction Analysis With Omicverse or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does String Protein Interaction Analysis With Omicverse use?
About 749 tokens (SKILL.md is roughly 3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to String Protein Interaction Analysis With Omicverse?
Skills that share tags, products or a category with String Protein Interaction Analysis With Omicverse: String Database (davila7/claude-code-templates, 33k stars), String Database (aipoch/medical-research-skills, 1.9k stars), String Database Ppi (jaechang-hits/SciAgent-Skills, 374 stars) and Translation Strings (thedaviddias/Front-End-Checklist, 74k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains String Protein Interaction Analysis With Omicverse?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.