Content Research Writer
weapp-tailwindcss/weapp-tailwindcss
Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section.
Compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries.
Install Bib Coverage
$ npx skills add flonat/flonat-research --skill bib-coverage -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install flonat/flonat-research bib-coverage --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/flonat/flonat-research.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bib-coverage .claude/skills/bib-coverage && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bib-coverage" agent skill from https://github.com/flonat/flonat-research/tree/main/skills/bib-coverage into .claude/skills/bib-coverage/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bib-coverage", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/flonat/flonat-research/tree/main/skills/bib-coverageType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add flonat/flonat-research --skill bib-coverage -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install flonat/flonat-research bib-coverage --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/flonat/flonat-research.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bib-coverage .agents/skills/bib-coverage && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bib-coverage" agent skill from https://github.com/flonat/flonat-research/tree/main/skills/bib-coverage into .agents/skills/bib-coverage/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bib-coverage", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add flonat/flonat-research --skill bib-coverage -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install flonat/flonat-research bib-coverage --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/flonat/flonat-research.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bib-coverage .cursor/skills/bib-coverage && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bib-coverage" agent skill from https://github.com/flonat/flonat-research/tree/main/skills/bib-coverage into .cursor/skills/bib-coverage/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bib-coverage", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/flonat/flonat-research.git --path skills/bib-coverage--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add flonat/flonat-research --skill bib-coverage -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install flonat/flonat-research bib-coverage --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/flonat/flonat-research.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bib-coverage .gemini/skills/bib-coverage && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bib-coverage" agent skill from https://github.com/flonat/flonat-research/tree/main/skills/bib-coverage into .gemini/skills/bib-coverage/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bib-coverage", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install flonat/flonat-research bib-coverageInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add flonat/flonat-research --skill bib-coverage -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/flonat/flonat-research.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bib-coverage .github/skills/bib-coverage && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bib-coverage" agent skill from https://github.com/flonat/flonat-research/tree/main/skills/bib-coverage into .github/skills/bib-coverage/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bib-coverage", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add flonat/flonat-research --skill bib-coverage -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install flonat/flonat-research bib-coverage --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/flonat/flonat-research.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bib-coverage .opencode/skills/bib-coverage && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bib-coverage" agent skill from https://github.com/flonat/flonat-research/tree/main/skills/bib-coverage into .opencode/skills/bib-coverage/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bib-coverage", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bib-coverage- GitHub stars
- 145
- Token cost
- ~1.4k tokens
- SKILL.md length
- 613 words
- Files
- 1
- Skills in repo
- 83
- Repo updated
- First seen
- Licence
- MIT
At a glance
Compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries.
- Works in 5 steps: Load Project Bibliography → Load Paperpile Folder → Compare → …
- The user asks to compare a project .bib against a Paperpile project/topic folder to find uncited papers
- SKILL.md covers When to Use, When NOT to Use, Inputs and Workflow, plus 3 more sections
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
What it does
Bib Coverage is an agent skill from flonat/flonat-research. Compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries. Use when the user asks to compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries.
Its SKILL.md is about 1.4k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Citation management. The repository describes itself as: Shareable Claude Code + Codex infrastructure for PhD researchers — skills, agents, hooks, and rules for academic workflows. The licence is MIT.
When your agent uses it
- The user asks to compare a project .bib against a Paperpile project/topic folder to find uncited papers
- Unfiled entries
Example prompts
- “/bib-coverage”
Requirements
- Pre-approved tools (allowed-tools): Read, Glob, Grep, Bash(paperpile*)
Workflow steps
5 steps, taken from the step headings in SKILL.md.
What it can do on your machine
Read from SKILL.md and the folder at commit da27600. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves these tools, so the agent can use them without asking each time:
ReadGlobGrepBash(paperpile*)
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bib Coverage loads about 1.4k tokens when it runs. Until then it costs about 63 tokens; SKILL.md has 613 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
The full file from flonat/flonat-research at commit da27600, republished under its MIT licence (© flonat). 613 words, ~1,411 tokens.
Download SKILL.mdSave it as
.claude/skills/bib-coverage/SKILL.md (or your agent's skills folder).- name
- bib-coverage
- description
- Compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries. Use when the user asks to compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries.
- allowed-tools
- Read, Glob, Grep, Bash(paperpile*)
- argument-hint
- [project-path or tex-file]
Bibliography Coverage
LIBRARY-FIRST RULE: ALWAYS check Paperpile (paperpile search-library) when assessing coverage.
Compare a project's .bib file against a Paperpile project/topic folder to identify gaps between the project bibliography and the reference library.
When to Use
- After a literature search, to see what % of the topic collection is cited
- Before submitting a paper, to catch references you forgot to cite
- When reviewing a Paperpile project/topic folder, to find items not yet in any project's
.bib - After a bibliography-quality check, as a complementary completeness check
When NOT to Use
- Finding new references — use an installed literature-discovery workflow or scholarly search
- Validating .bib quality (missing fields, DOI issues, preprint staleness) — use an installed bibliography validator
- Building a .bib from scratch — use
bib-parseor an installed literature workflow
Inputs
- Project
.bibfile — detected automatically (same logic asbib-validate: look forreferences.bib, then any.bibin the project) - Paperpile folder — resolved from:
- Explicit
--topic <slug>argument - Project's
CLAUDE.mdor Atlas topic frontmatter - Directory name if inside a research project
- If no collection can be resolved, report an error and suggest specifying
--topic
- Explicit
Workflow
1. Load Project Bibliography
Parse the .bib file to extract all entry keys and titles.
2. Load Paperpile Folder
- Call
paperpile get-foldersto find the relevant full topic path - Call
paperpile get-items-by-folder "<full path>"to get items in that folder - Extract item keys (citekey) and titles
Paperpile's labelsNamed and foldersNamed are distinct. Project/topic
collections use folders. If a leaf occurs under multiple parents, stop and
request or derive the full path; never silently choose one.
Graceful degradation: If the paperpile CLI is unavailable, skip with a warning — report .bib-only stats.
3. Compare
Produce three lists:
| Category | Description | Action |
|---|---|---|
| Cited + In Folder | Items in both .bib and the Paperpile folder | No action — healthy |
| Cited but Not in Folder | Items in .bib but not in the Paperpile folder | Needs filing in Paperpile |
| In Folder but Not Cited | Items in the Paperpile folder but not cited in any .tex | Potential references — review for inclusion |
4. Coverage Stats
## Coverage Report
**Paperpile folder:** [full path] ([N] items)
**Project .bib:** [M] entries
| Metric | Count | % |
|--------|-------|---|
| Cited + In Folder | X | X/N |
| Cited but Not Filed | Y | — |
| In Folder, Not Cited | Z | Z/N |
| Coverage (cited/folder) | — | X/N% |5. Recommendations
Based on the results:
- Low coverage (<50%): "The project cites few papers from the topic collection. Consider reviewing uncited items for relevance."
- Many unfiled citations (>5): "Several cited papers aren't in the topic collection. Reconcile them with the configured reference manager."
- High coverage (>80%): "Good coverage of the topic collection."
Show full SKILL.md (223 more words)Show less
Report Format
## bib-coverage: [Project Name]
**Topic:** [slug] | **Collection:** [name] ([N] items) | **Bib:** [filename] ([M] entries)
### Coverage: X/N (XX%)
### Cited but Not in Collection (need filing)
| # | Key | Title | Year |
|---|-----|-------|------|
### In Collection but Not Cited (potential references)
| # | Key | Title | Year |
|---|-----|-------|------|Phase 6 (Optional): Gap Discovery via Recommendations
When coverage is low (<50%) or the user says "find what I'm missing", use the S2 Recommendations API to discover papers that should be in the collection but aren't.
- Select seed papers — pick the 3-5 most-cited papers from the
.bibfile - Get recommendations — run
scholarly scholarly-similar-works <paper_id> --jsonfor each seed paper to get ML-based similar paper suggestions - Filter against existing — remove papers already in the
.bibor Paperpile folder - Rank by relevance — sort by citation count and recency
- Present candidates — show a table of recommended additions with titles, years, citation counts
Dispatch rule. If ≥5 seed papers are selected, dispatch a single Explore sub-agent that runs scholarly scholarly-similar-works for each seed and writes merged candidates to /tmp/bib-coverage-similar.json. Main context reads only the merged result. For 3–4 seeds, inline calls are fine. See _shared/cli-dispatch-policy.md.
This turns a passive coverage check into an active discovery tool — finding papers the researcher should know about based on what they already cite.
Cross-References
- Installed bibliography validator — Quality validation (missing fields, DOIs, preprints). Run alongside coverage for a complete check.
- Installed literature workflow — Discovery of new references. Coverage identifies gaps in existing collections.
bib-parse— Extract citations from PDFs. Run coverage after parsing to see overlap with the topic collection.shared/reference-resolution.md— Topic collection resolution logic
© flonat, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Files
Just SKILL.md in skills/bib-coverage of flonat/flonat-research.
Open the folder on GitHubat commit da27600
Compare with similar skills
Bib Coverage next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bib Coverage this skillflonat/flonat-research | 145 | — | ~1.4k | Automated safety check: Pass | MIT | |
| Content Research Writerweapp-tailwindcss/weapp-tailwindcss | 1.9k | 25 repos | ~3.5k | Automated safety check: Pass | MIT | |
| NetworkxzLanqing/codex-claude-academic-skills | 4.6k | 16 repos | ~3.2k | Automated safety check: Pass | BSD-3-Clause | |
| Citation Verification GuideGalaxy-Dawn/claude-scholar | 5.7k | 3 repos | ~1.9k | Automated safety check: Pass | MIT | |
| Systematic Review ScreenerImbad0202/academic-research-skills | 51k | — | ~8.4k | Automated safety check: Pass | Custom licence | |
| Literature Reviewneflibata-feng/MyArxiv-Agent | 126 | 21 repos | ~5.9k | Automated safety check: Notes | MIT |
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Literature Review
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Openalex Database
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Categories
Questions about Bib Coverage
What does Bib Coverage do?
Compare a project .bib against a Paperpile project/topic folder to find uncited papers or unfiled entries. Bib Coverage is an agent skill from flonat/flonat-research.bib against a Paperpile project/topic folder to find uncited papers or unfiled entries.
When should I use Bib Coverage?
Bib Coverage fits situations like: the user asks to compare a project .bib against a Paperpile project/topic folder to find uncited papers; unfiled entries.
How do I install Bib Coverage in Claude Code?
Run `npx skills add flonat/flonat-research --skill bib-coverage -a claude-code`. Or copy the skill folder (skills/bib-coverage in flonat/flonat-research) into .claude/skills/bib-coverage in your project. Claude Code loads it when a task matches its description.
How do I install Bib Coverage in Codex?
Run `npx skills add flonat/flonat-research --skill bib-coverage -a codex`. Or copy the skill folder (skills/bib-coverage in flonat/flonat-research) into .agents/skills/bib-coverage in your project. Codex loads it when a task matches its description.
Can I use Bib Coverage in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add flonat/flonat-research --skill bib-coverage -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bib-coverage, .gemini/skills/bib-coverage, .github/skills/bib-coverage and .opencode/skills/bib-coverage in your project.
What does Bib Coverage need to run?
SKILL.md names no scripts, command-line tools or credentials: Bib Coverage is instructions for the agent only. Its frontmatter pre-approves these tools: Read, Glob, Grep, Bash(paperpile*).
Does Bib Coverage access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Bib Coverage safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bib Coverage use?
Bib Coverage is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
How many tokens does Bib Coverage use?
About 1.4k tokens (SKILL.md is roughly 5.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bib Coverage?
Skills that share tags, products or a category with Bib Coverage: Content Research Writer (weapp-tailwindcss/weapp-tailwindcss, 1.9k stars), Networkx (zLanqing/codex-claude-academic-skills, 4.6k stars), Citation Verification Guide (Galaxy-Dawn/claude-scholar, 5.7k stars) and Systematic Review Screener (Imbad0202/academic-research-skills, 51k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bib Coverage?
flonat (a GitHub user) maintains it in flonat/flonat-research, which has 145 GitHub stars. The repository holds 83 skills in this directory. The repository was last updated on September 29, 2026.
Source: flonat/flonat-research on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.