Literature Review
neflibata-feng/MyArxiv-Agent
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).
Deep research over the Semantic Scholar Graph API. An agent skill from CodeAlive-AI/ai-driven-development.
$ npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install CodeAlive-AI/ai-driven-development semantic-scholar-deep --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/CodeAlive-AI/ai-driven-development.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/semantic-scholar-deep .claude/skills/semantic-scholar-deep && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "semantic-scholar-deep" agent skill from https://github.com/CodeAlive-AI/ai-driven-development/tree/main/skills/semantic-scholar-deep into .claude/skills/semantic-scholar-deep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "semantic-scholar-deep", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/CodeAlive-AI/ai-driven-development/tree/main/skills/semantic-scholar-deepType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install CodeAlive-AI/ai-driven-development semantic-scholar-deep --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/CodeAlive-AI/ai-driven-development.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/semantic-scholar-deep .agents/skills/semantic-scholar-deep && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "semantic-scholar-deep" agent skill from https://github.com/CodeAlive-AI/ai-driven-development/tree/main/skills/semantic-scholar-deep into .agents/skills/semantic-scholar-deep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "semantic-scholar-deep", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install CodeAlive-AI/ai-driven-development semantic-scholar-deep --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/CodeAlive-AI/ai-driven-development.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/semantic-scholar-deep .cursor/skills/semantic-scholar-deep && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "semantic-scholar-deep" agent skill from https://github.com/CodeAlive-AI/ai-driven-development/tree/main/skills/semantic-scholar-deep into .cursor/skills/semantic-scholar-deep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "semantic-scholar-deep", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/CodeAlive-AI/ai-driven-development.git --path skills/semantic-scholar-deep--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install CodeAlive-AI/ai-driven-development semantic-scholar-deep --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/CodeAlive-AI/ai-driven-development.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/semantic-scholar-deep .gemini/skills/semantic-scholar-deep && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "semantic-scholar-deep" agent skill from https://github.com/CodeAlive-AI/ai-driven-development/tree/main/skills/semantic-scholar-deep into .gemini/skills/semantic-scholar-deep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "semantic-scholar-deep", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install CodeAlive-AI/ai-driven-development semantic-scholar-deepInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/CodeAlive-AI/ai-driven-development.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/semantic-scholar-deep .github/skills/semantic-scholar-deep && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "semantic-scholar-deep" agent skill from https://github.com/CodeAlive-AI/ai-driven-development/tree/main/skills/semantic-scholar-deep into .github/skills/semantic-scholar-deep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "semantic-scholar-deep", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install CodeAlive-AI/ai-driven-development semantic-scholar-deep --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/CodeAlive-AI/ai-driven-development.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/semantic-scholar-deep .opencode/skills/semantic-scholar-deep && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "semantic-scholar-deep" agent skill from https://github.com/CodeAlive-AI/ai-driven-development/tree/main/skills/semantic-scholar-deep into .opencode/skills/semantic-scholar-deep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "semantic-scholar-deep", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
semantic-scholar-deepDeep research over the Semantic Scholar Graph API. An agent skill from CodeAlive-AI/ai-driven-development.
Semantic Scholar Deep is an agent skill from CodeAlive-AI/ai-driven-development. Deep research over the Semantic Scholar Graph API. Covers endpoints missing from allenai's lookup skill — paper references (backward citations), recommendations, batch paper lookup (up to 500 IDs), snippet search, and multi-hop citation graph traversal (BFS forward/backward). Use when the user asks to build a citation graph, expand a literature seed, find related work, run a reference network traversal, explore what a paper cites or what cites it beyond simple lookup, or batch-resolve many DOI/arXiv/S2 IDs. For…
Its SKILL.md is about 2.2k tokens, which your agent loads only when the skill is triggered. The skill folder holds 9 other files, including scripts and reference files (for example `README.md`, `agents/deep-paper-researcher.md` and `references/endpoints.md`).
It sits in Research & Science, covering Academic paper search and Citation management. It works with Semantic Scholar and arXiv. The repository describes itself as: Practices, protocols, and skills for AI-driven software development. Skills and safety hooks for Claude Code, Codex, OpenCode, Cursor, Antigravity, and any agent supporting the… The licence is MIT.
2 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 25b7b1d. It shows what the files ask for, not the result of running them.
Pre-approves these tools, so the agent can use them without asking each time:
Bash(python3:*)ReadWriteEditGlobGrepAgentFrom allowed-tools in the SKILL.md frontmatter.
Ships 2 files in scripts/ (Python), which the agent can run.
Shell commands in SKILL.md call:
python3From the folder's file list and the shell code blocks in SKILL.md.
Links to these hosts (documentation or services it may open):
semanticscholar.orgFrom URLs in SKILL.md, links to its own repository left out.
Names these keys or tokens, usually read from environment variables:
SEMANTIC_SCHOLAR_API_KEYFrom names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Semantic Scholar Deep loads about 2.2k tokens when it runs, and up to ~4.4k if it reads all its reference files. Until then it costs about 191 tokens; SKILL.md has 834 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
The full file from CodeAlive-AI/ai-driven-development at commit 25b7b1d, republished under its MIT licence (© CodeAlive-AI). 834 words, ~2,186 tokens.
.claude/skills/semantic-scholar-deep/SKILL.md (or your agent's skills folder). This skill also uses 6 other files; get the full folder from GitHub.Purpose: fill the gaps that semantic-scholar-lookup (allenai) leaves — references, recommendations, batch, and multi-hop citation-graph traversal.
ss_client.py + citation_graph.pyTwo execution modes:
Use when the user asks for one specific endpoint:
ss_client.py references <id>ss_client.py recommendations <id>ss_client.py batch ...ss_client.py snippets "..."Fast, cheap, no orchestration overhead.
deep-paper-researcher subagentUse when the task is multi-step or would otherwise flood the context:
Mandatory prompt contents. The subagent runs in isolated context with no access to this conversation's system reminders. Include exactly these two things:
Today is YYYY-MM-DD. Pull from the currentDate system-reminder field, or run date -I via Bash before delegating if it's missing. Never rely on training-data intuitions about the current year.Do NOT do any of these:
Call:
Agent(
subagent_type="deep-paper-researcher",
description="<3–5 word task>",
prompt="Today is 2026-04-22.\n\nUser's request: найди современные 10 статей про AI Code Review на arXiv.\n\n<optional: output format hints, language preference>"
# model: "opus" ← add only when the user opts in (see below)
)The subagent's Freshness Mode section handles classification; keep this layer thin.
The subagent's model frontmatter is sonnet — that's the default.
Override to Opus by passing model: "opus" to the Agent tool only if the user explicitly requests deeper reasoning. Triggers (any of):
Never auto-upgrade to Opus without a user signal — Sonnet handles the default literature-review workflow fine and costs less.
Trigger this skill for:
Do NOT use for:
semantic-scholar-lookup (faster, no Python)web_search_advanced_exa with category: "research paper" (Exa MCP)deep-paper-researcher subagent, which orchestrates all three toolsLocated under ${SKILL_DIR}/scripts/.
ss_client.py — raw API clientSubcommands (all output JSON on stdout):
| Command | Endpoint | Notes |
|---|---|---|
search <query> | /graph/v1/paper/search | --bulk switches to /search/bulk (up to 1000/page) |
paper <id> | /graph/v1/paper/{id} | ID forms: raw, DOI:, ARXIV:, CorpusId:, PMID:, URL: |
citations <id> | /graph/v1/paper/{id}/citations | paginated; up to 1000 per page |
references <id> | /graph/v1/paper/{id}/references | paginated; up to 1000 per page |
recommendations <id> | /recommendations/v1/papers/forpaper/{id} | `--pool recent |
batch <id1> <id2> ... | POST /graph/v1/paper/batch | up to 500 IDs |
author-search <query> | /graph/v1/author/search | |
author <id> | /graph/v1/author/{id} | |
author-papers <id> | /graph/v1/author/{id}/papers | |
snippets <query> | /graph/v1/snippet/search | Full-text snippets |
Common flags: --limit, --offset, --fields, --year, --fields-of-study, --venue, --min-citation-count.
citation_graph.py — BFS traversalpython3 ${SKILL_DIR}/scripts/citation_graph.py <paperId> \
--direction both \
--depth 2 \
--max-nodes 200 \
--per-hop-limit 50 \
--output graph.jsonDirections: forward (citations), backward (references), both. Output schema described in the script docstring — nodes: {paperId → metadata+depth}, edges: [{src, dst, direction}].
SEMANTIC_SCHOLAR_API_KEY env var: much higher limits.Retry-After.references/endpoints.md — complete field list per endpoint + query examplesreferences/workflows.md — lit-review, novelty-check, seed-expansion patternsScripts emit raw JSON — redirect to files for anything beyond ~20 results. For graphs >50 nodes always pass --output graph.json to avoid flooding the conversation context.
Typical pipeline inside the deep-paper-researcher subagent:
mcp__exa__web_search_advanced_exa (neural + multi-source)ss_client.py search / batch to get paperId from titles or DOIscitation_graph.py with the top 3-5 seedsA paired subagent definition ships alongside the skill at agents/deep-paper-researcher.md. It orchestrates Exa MCP + allenai semantic-scholar-lookup + this skill's scripts into a token-isolated research agent with:
Anchor date / Mode / Window headerTo install for Claude Code (manual, one-time):
cp ~/.agents/skills/semantic-scholar-deep/agents/deep-paper-researcher.md ~/.claude/agents/(Path may differ on other agents — copy to the agent's subagents directory, then restart the session.)
Prerequisites for full pipeline: Exa MCP connected, allenai/asta-plugins@"Semantic Scholar Lookup" skill installed.
© CodeAlive-AI, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 6 other files (scripts, references) in skills/semantic-scholar-deep of CodeAlive-AI/ai-driven-development.
Open the folder on GitHubat commit 25b7b1d
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in CodeAlive-AI/ai-driven-development, which our catalogue first saw on October 7, 2026.
Semantic Scholar Deep next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Semantic Scholar Deep this skillCodeAlive-AI/ai-driven-development | 157 | 1 repos | ~2.2k | Automated safety check: Pass | MIT | |
| Literature Reviewneflibata-feng/MyArxiv-Agent | 126 | 21 repos | ~5.9k | Automated safety check: Notes | MIT | |
| Paper Research on arXivXiaomiMiMo/MiMo-Code | 14k | 1 repos | ~1.5k | Automated safety check: Pass | MIT | |
| Literature Review AgentAr9av/PaperOrchestra | 677 | 2 repos | ~5.2k | Automated safety check: Pass | Custom licence | |
| Paper AutoratersAr9av/PaperOrchestra | 677 | 2 repos | ~1.6k | Automated safety check: Pass | Custom licence | |
| Deep Research Literature SurveyHKUSTDial/Supervisor-Skills | 8.5k | — | ~2.4k | Automated safety check: Pass | CC-BY-NC-SA-4.0 |
neflibata-feng/MyArxiv-Agent
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).
XiaomiMiMo/MiMo-Code
Searches arXiv, fetches metadata, generates BibTeX, downloads PDFs and finds citations and related papers using a bundled Python script.
Ar9av/PaperOrchestra
Step 3 of the PaperOrchestra pipeline (arXiv:2604.05018). An agent skill from Ar9av/PaperOrchestra.
Ar9av/PaperOrchestra
Run the four paper-quality autoraters from PaperOrchestra (arXiv:2604.05018, App.
HKUSTDial/Supervisor-Skills
Runs a survey-grade literature investigation: fixes the research questions, searches from adversarial angles, verifies citations and writes an evidence-first report.
jing1312/nature-figure-skill
Multi-source literature search, citation verification, MeSH search strategy, citation file management (.nbib/.ris/.bib conversion), and reference management (BibTeX, related articles, ID conversion)…
CodeAlive-AI/ai-driven-development
Investigate GitHub repository history before risky code changes using git blame/log, GitHub PRs, review comments, squash/rebase/cherry-pick/rename heuristics, and cited evidence.
CodeAlive-AI/ai-driven-development
Create, publish, delete, and submit plugins for coding agents (Claude Code, OpenCode, Devin CLI/Desktop).
CodeAlive-AI/ai-driven-development
A skill your agent uses when testing Windows 11 desktop apps (WinForms/WPF/UWP) via UFO UIA/Win32 automation MCP.
CodeAlive-AI/ai-driven-development
Audit and improve repositories for reliable agentic work across Codex and Codex App, Claude Code, and OpenCode.
CodeAlive-AI/ai-driven-development
Manage hooks and automation for coding agents (Claude Code, Codex CLI, OpenCode, Devin CLI/Desktop).
CodeAlive-AI/ai-driven-development
Fetch a web page (URL) and return clean Markdown via local trafilatura, with Exa MCP as a fallback for JS-rendered or anti-bot pages.
Works with
Categories
Deep research over the Semantic Scholar Graph API. An agent skill from CodeAlive-AI/ai-driven-development. Semantic Scholar Deep is an agent skill from CodeAlive-AI/ai-driven-development. Deep research over the Semantic Scholar Graph API.
Semantic Scholar Deep fits situations like: the user asks to build a citation graph; expand a literature seed; find related work; run a reference network traversal.
Run `npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a claude-code`. Or copy the skill folder (skills/semantic-scholar-deep in CodeAlive-AI/ai-driven-development) into .claude/skills/semantic-scholar-deep in your project. Claude Code loads it when a task matches its description.
Run `npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a codex`. Or copy the skill folder (skills/semantic-scholar-deep in CodeAlive-AI/ai-driven-development) into .agents/skills/semantic-scholar-deep in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add CodeAlive-AI/ai-driven-development --skill semantic-scholar-deep -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/semantic-scholar-deep, .gemini/skills/semantic-scholar-deep, .github/skills/semantic-scholar-deep and .opencode/skills/semantic-scholar-deep in your project.
Going by SKILL.md and its folder, Semantic Scholar Deep needs Python for the scripts in its folder, the command-line tools its instructions call (python3) and credentials named SEMANTIC_SCHOLAR_API_KEY. Our summary lists: Python 3; A credential in SEMANTIC_SCHOLAR_API_KEY. Its frontmatter pre-approves these tools: Bash(python3:*), Read, Write, Edit, Glob, Grep, Agent.
SKILL.md names 1 domain. As links in the text: semanticscholar.org. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
Semantic Scholar Deep is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 2.2k tokens (SKILL.md is roughly 8.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 2.3k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Semantic Scholar Deep: Literature Review (neflibata-feng/MyArxiv-Agent, 126 stars), Paper Research on arXiv (XiaomiMiMo/MiMo-Code, 14k stars), Literature Review Agent (Ar9av/PaperOrchestra, 677 stars) and Paper Autoraters (Ar9av/PaperOrchestra, 677 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
CodeAlive-AI (a GitHub organization) maintains it in CodeAlive-AI/ai-driven-development, which has 157 GitHub stars. The repository holds 22 skills in this directory. The repository was last updated on October 6, 2026.
Source: CodeAlive-AI/ai-driven-development on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.