Peer Review
K-Dense-AI/claude-scientific-writer
Prepare evidence-bounded, constructive peer-review drafts and structured manuscript assessments.
Agent skill
Smr Software And Reproducibility
by brycewang-stanford in brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when preparing the released software, code, data, and reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that…
Install Smr Software And Reproducibility
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills smr-software-and-reproducibility --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility .claude/skills/smr-software-and-reproducibility && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "smr-software-and-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility into .claude/skills/smr-software-and-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "smr-software-and-reproducibility", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibilityType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills smr-software-and-reproducibility --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility .agents/skills/smr-software-and-reproducibility && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "smr-software-and-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility into .agents/skills/smr-software-and-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "smr-software-and-reproducibility", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills smr-software-and-reproducibility --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility .cursor/skills/smr-software-and-reproducibility && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "smr-software-and-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility into .cursor/skills/smr-software-and-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "smr-software-and-reproducibility", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/brycewang-stanford/Awesome-Journal-Skills.git --path Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills smr-software-and-reproducibility --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility .gemini/skills/smr-software-and-reproducibility && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "smr-software-and-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility into .gemini/skills/smr-software-and-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "smr-software-and-reproducibility", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills smr-software-and-reproducibilityInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility .github/skills/smr-software-and-reproducibility && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "smr-software-and-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility into .github/skills/smr-software-and-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "smr-software-and-reproducibility", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills smr-software-and-reproducibility --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility .opencode/skills/smr-software-and-reproducibility && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "smr-software-and-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility into .opencode/skills/smr-software-and-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "smr-software-and-reproducibility", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
smr-software-and-reproducibility- GitHub stars
- 1.2k
- Token cost
- ~1.1k tokens
- SKILL.md length
- 506 words
- Files
- 1
- Skills in repo
- 2,387
- Repo updated
- First seen
- Licence
- MIT
At a glance
A skill your agent uses when preparing the released software, code, data, and reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that…
- Preparing the released software
- SKILL.md covers What "released software" means…, The reproducibility pipeline, The SMR availability statement and Anonymization of the package…, plus 3 more sections
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
- Reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that recreate every table
What it does
Smr Software And Reproducibility is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when preparing the released software, code, data, and reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that recreate every table, figure, and simulation, and the SMR data-and-code availability statement. Builds the reproducibility layer; does not write the manuscript.
Its SKILL.md is about 1.1k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Reproducible research. The repository describes itself as: Journal-specific Claude Code/Codex skill packs covering mainstream journals — AER, QJE, Nature, Cell, 管理世界, 经济研究 & 200+ more — your fast track to getting published. ｜ 覆盖主流期刊的… The licence is MIT.
When your agent uses it
- Preparing the released software
- Reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that recreate every table
- The SMR data-and-code availability statement
Example prompts
- “/smr-software-and-reproducibility”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit 932eb23. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Smr Software And Reproducibility loads about 1.1k tokens when it runs. Until then it costs about 91 tokens; SKILL.md has 506 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
The full file from brycewang-stanford/Awesome-Journal-Skills at commit 932eb23, republished under its MIT licence (© brycewang-stanford). 506 words, ~1,111 tokens.
Download SKILL.mdSave it as
.claude/skills/smr-software-and-reproducibility/SKILL.md (or your agent's skills folder).- name
- smr-software-and-reproducibility
- description
- Use when preparing the released software, code, data, and reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that recreate every table, figure, and simulation, and the SMR data-and-code availability statement. Builds the reproducibility layer; does not write the manuscript.
SMR Software and Reproducibility
Use this to meet SMR's defining expectation: a methods paper should ship a method other people can run. SMR readers adopt methods, so released, documented software and a reproducible pipeline are not optional extras — a beautiful estimator with no usable code is a method no one will use, and reviewers know it.
What "released software" means at SMR
- A package or well-structured code implementing the method in a mainstream environment (R, Stata, Python — whatever the audience uses), with a documented interface, not a private analysis script.
- Worked usage: a minimal example that runs the method on toy or example data, so a reader can confirm it works before adapting it.
- Versioned and citable: deposit in a trusted public repository (e.g., a tagged release with a DOI) rather than a personal homepage that can disappear.
The reproducibility pipeline
Every exhibit in the paper must be regenerable:
- A README stating software versions, dependencies, expected runtime, and the entry-point command.
- A master script that runs the full pipeline: simulation grid → tables → figures → illustration, with seeds fixed so Monte Carlo results reproduce exactly.
- One command per exhibit mapping (or a clear table) so a replicator knows which script produces Table 2, Figure 3, etc.
- For long simulations, provide a smoke-test mode (few replications) that runs quickly and a full-run mode that reproduces the paper.
The SMR availability statement
SMR requires a data-and-code availability statement (检索于 2026-06；以官网为准):
- Disclose how the study data, code, and materials can be permanently accessed — repository name, DOI/URL, and any access conditions.
- Code and materials are expected; data should be deposited where possible, and restricted data must state the reason and the access path/conditions in the statement.
- Use a trusted public repository; reference datasets in DataCite style.
- Write the statement at submission, not at acceptance — it is part of the manuscript's conformance.
Show full SKILL.md (201 more words)Show less
Anonymization of the package under double-anonymized review
- The released materials submitted for review must not deanonymize: strip author names, institutional paths, and account handles from code, README, and repository metadata.
- Use an anonymized repository (e.g., a blinded archive) for the review copy; reveal the public, citable version at acceptance.
Checklist
- The method is released as a usable package/structured code, not a private script.
- A minimal runnable usage example is included.
- The code is versioned and deposited in a trusted, citable public repository.
- A README states versions, dependencies, runtime, and the entry command.
- A master script reproduces every table, figure, and the simulation, with seeds fixed.
- An exhibit→script map lets a replicator find each result.
- A smoke-test mode exists for long simulations.
- The data-and-code availability statement is written, with repository/DOI and any access conditions.
- The review-copy materials are anonymized.
Anti-patterns
- Private analysis script as "software": code that only the authors can run.
- Unseeded simulation: Monte Carlo results that cannot be reproduced.
- Disappearing host: code on a personal homepage with no archive/DOI.
- Missing exhibit map: a replicator cannot tell which script makes which table.
- Availability statement deferred to acceptance, or vague ("available on request").
- Deanonymizing repo metadata in the review copy.
Output format
[Reproducibility status] release-ready / needs work / not ready
[Software] package/structured code? usage example? citable deposit?
[Pipeline] master script + seeds + exhibit map present? smoke-test mode?
[Availability statement] written? repository/DOI + access conditions stated?
[Anonymization] review-copy materials clean? yes/no
[Next SMR skill] smr-submission© brycewang-stanford, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Files
Just SKILL.md in Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility of brycewang-stanford/Awesome-Journal-Skills.
Open the folder on GitHubat commit 932eb23
Compare with similar skills
Smr Software And Reproducibility next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Smr Software And Reproducibility this skillbrycewang-stanford/Awesome-Journal-Skills | 1.2k | — | ~1.1k | Automated safety check: Pass | MIT | |
| Peer ReviewK-Dense-AI/claude-scientific-writer | 2.4k | 2 repos | ~3.1k | Automated safety check: Notes | MIT | |
| CHARLS Paper Reproduction Guidexjtulyc/MedgeClaw | 617 | 1 repos | ~1.8k | Automated safety check: Pass | None | |
| Compute Environment Setupaipoch/open-science | 5.5k | — | ~2.6k | Automated safety check: Pass | Apache-2.0 | |
| Figure Styleaipoch/open-science | 5.5k | — | ~5.1k | Automated safety check: Pass | Apache-2.0 | |
| Add Bactopia Toolbactopia/bactopia | 522 | — | ~4.1k | Automated safety check: Pass | MIT |
Similar skills
CHARLS Paper Reproduction Guide
xjtulyc/MedgeClaw
Guides an agent through reproducing papers built on the CHARLS health and retirement survey, from variable mapping to cognition, depression and isolation scores.
Compute Environment Setup
aipoch/open-science
Prepares setup instructions and a named activation file for a user-managed software environment on an Open-Science SSH or Slurm compute host.
Figure Style
aipoch/open-science
Publication-grade correctness and legibility rules for final-deliverable scientific figures, not exploratory plots.
Add Bactopia Tool
bactopia/bactopia
Scaffold a complete Bactopia Tool across all three tiers -- module, subworkflow, and workflow entry point under workflows/bactopia-tools/.
Modeling Code and Result Contracts
yushui2022/MathModel-Skill
Generates result-evidence contracts, tables and runnable q1 to q3 modeling code scaffolds for a math modeling paper from a model route, a data plan and cleaned data.
More from brycewang-stanford/Awesome-Journal-Skills
All 2,387 skills in this repoAaag Data Analysis
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running and reporting the analysis for an Annals of the American Association of Geographers manuscript — spatial statistics and modeling, remote-sensing accuracy, or…
Aaag Literature Positioning
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when positioning an Annals of the American Association of Geographers manuscript in the literature — engaging geographic scholarship across the relevant area and the…
Aaag Rebuttal
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when responding to an Annals of the American Association of Geographers decision letter (major/minor revision) — building a point-by-point response to the subject editor and…
Aaag Research Design
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when defending the research design of an Annals of the American Association of Geographers manuscript — spatial/quantitative analysis and GIScience, remote-sensing and…
Aaag Review Process
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when you need to understand how the Annals of the American Association of Geographers evaluates a manuscript — double-anonymous review routed through a subject editor by…
Aaag Submission
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running the final pre-submission preflight for the Annals of the American Association of Geographers via ScholarOne Manuscripts — area/article-type selection…
Related
Categories
Questions about Smr Software And Reproducibility
What does Smr Software And Reproducibility do?
A skill your agent uses when preparing the released software, code, data, and reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that…. Smr Software And Reproducibility is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when preparing the released software, code, data, and reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that recreate every table, figure, and simulation, and the SMR data-and-code availability statement.
When should I use Smr Software And Reproducibility?
Smr Software And Reproducibility fits situations like: preparing the released software; reproducibility materials for a Sociological Methods & Research (SMR) paper — a usable package plus scripts that recreate every table; the SMR data-and-code availability statement.
How do I install Smr Software And Reproducibility in Claude Code?
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a claude-code`. Or copy the skill folder (Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility in brycewang-stanford/Awesome-Journal-Skills) into .claude/skills/smr-software-and-reproducibility in your project. Claude Code loads it when a task matches its description.
How do I install Smr Software And Reproducibility in Codex?
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a codex`. Or copy the skill folder (Sociological-Methods-and-Research-Skills/skills/smr-software-and-reproducibility in brycewang-stanford/Awesome-Journal-Skills) into .agents/skills/smr-software-and-reproducibility in your project. Codex loads it when a task matches its description.
Can I use Smr Software And Reproducibility in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill smr-software-and-reproducibility -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/smr-software-and-reproducibility, .gemini/skills/smr-software-and-reproducibility, .github/skills/smr-software-and-reproducibility and .opencode/skills/smr-software-and-reproducibility in your project.
What does Smr Software And Reproducibility need to run?
SKILL.md names no scripts, command-line tools or credentials: Smr Software And Reproducibility is instructions for the agent only. Our summary lists: Python 3.
Does Smr Software And Reproducibility access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Smr Software And Reproducibility safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Smr Software And Reproducibility use?
Smr Software And Reproducibility is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
How many tokens does Smr Software And Reproducibility use?
About 1.1k tokens (SKILL.md is roughly 4.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Smr Software And Reproducibility?
Skills that share tags, products or a category with Smr Software And Reproducibility: Peer Review (K-Dense-AI/claude-scientific-writer, 2.4k stars), CHARLS Paper Reproduction Guide (xjtulyc/MedgeClaw, 617 stars), Compute Environment Setup (aipoch/open-science, 5.5k stars) and Figure Style (aipoch/open-science, 5.5k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Smr Software And Reproducibility?
brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Awesome-Journal-Skills, which has 1,231 GitHub stars. The repository holds 2,387 skills in this directory. The repository was last updated on September 27, 2026.
Source: brycewang-stanford/Awesome-Journal-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.