Bio Spatial Transcriptomics Spatial Statistics
FreedomIntelligence/OpenClaw-Medical-Skills
Compute spatial statistics for spatial transcriptomics data using Squidpy.
A skill your agent uses when a Journal of Urban Economics (JUE) manuscript needs a spatial model to interpret its mechanism — a spatial-equilibrium frame, a sorting model, or a quantitative spatial…
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jue-theory-model --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Journal-of-Urban-Economics-Skills/skills/jue-theory-model .claude/skills/jue-theory-model && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "jue-theory-model" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Urban-Economics-Skills/skills/jue-theory-model into .claude/skills/jue-theory-model/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jue-theory-model", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Urban-Economics-Skills/skills/jue-theory-modelType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jue-theory-model --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/Journal-of-Urban-Economics-Skills/skills/jue-theory-model .agents/skills/jue-theory-model && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "jue-theory-model" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Urban-Economics-Skills/skills/jue-theory-model into .agents/skills/jue-theory-model/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jue-theory-model", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jue-theory-model --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/Journal-of-Urban-Economics-Skills/skills/jue-theory-model .cursor/skills/jue-theory-model && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "jue-theory-model" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Urban-Economics-Skills/skills/jue-theory-model into .cursor/skills/jue-theory-model/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jue-theory-model", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/brycewang-stanford/Awesome-Journal-Skills.git --path Journal-of-Urban-Economics-Skills/skills/jue-theory-model--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jue-theory-model --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/Journal-of-Urban-Economics-Skills/skills/jue-theory-model .gemini/skills/jue-theory-model && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "jue-theory-model" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Urban-Economics-Skills/skills/jue-theory-model into .gemini/skills/jue-theory-model/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jue-theory-model", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jue-theory-modelInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/Journal-of-Urban-Economics-Skills/skills/jue-theory-model .github/skills/jue-theory-model && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "jue-theory-model" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Urban-Economics-Skills/skills/jue-theory-model into .github/skills/jue-theory-model/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jue-theory-model", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jue-theory-model --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/Journal-of-Urban-Economics-Skills/skills/jue-theory-model .opencode/skills/jue-theory-model && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "jue-theory-model" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Urban-Economics-Skills/skills/jue-theory-model into .opencode/skills/jue-theory-model/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jue-theory-model", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
jue-theory-modelA skill your agent uses when a Journal of Urban Economics (JUE) manuscript needs a spatial model to interpret its mechanism — a spatial-equilibrium frame, a sorting model, or a quantitative spatial…
Jue Theory Model is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when a Journal of Urban Economics (JUE) manuscript needs a spatial model to interpret its mechanism — a spatial-equilibrium frame, a sorting model, or a quantitative spatial model (QSM) for counterfactuals. Builds the theory that disciplines the empirics; it does not establish the identification (jue-identification) or run robustness (jue-robustness).
Its SKILL.md is about 2.1k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
The repository describes itself as: Journal-specific Claude Code/Codex skill packs covering mainstream journals — AER, QJE, Nature, Cell, 管理世界, 经济研究 & 200+ more — your fast track to getting published. | 覆盖主流期刊的… The licence is MIT.
5 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 932eb23. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Jue Theory Model loads about 2.1k tokens when it runs. Until then it costs about 94 tokens; SKILL.md has 1,049 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from brycewang-stanford/Awesome-Journal-Skills at commit 932eb23, republished under its MIT licence (© brycewang-stanford). 1,049 words, ~2,139 tokens.
.claude/skills/jue-theory-model/SKILL.md (or your agent's skills folder).JUE is empirically led, but referees expect theory to discipline interpretation, not decorate it. Match the model to the claim:
| The claim is... | The model you need | Pitfalls |
|---|---|---|
| "this amenity/disamenity is valued at X" | Rosen–Roback capitalization, wages + rents jointly | using only prices ignores the wage margin and the worker indifference condition |
| "agglomeration raises productivity by Y" | sharing/matching/learning micro-foundation; sorting vs spillover decomposition | attributing sorting of high types to true agglomeration |
| "policy/infrastructure changes welfare by Z" | quantitative spatial model with mobility, trade/commuting, housing | counterfactual not invariant to the policy; ignored general-equilibrium reallocation |
| "households sort on local public goods" | Tiebout / discrete-choice sorting model | treating sorting as exogenous; no equilibrium in prices |
| "market access drives outcomes" | gravity/market-access (Donaldson–Hornbeck, ARSW) | endogenous network; access measured without the structural weight |
JUE accepts both calibrated and estimated spatial models, but the referee asks the same question: what disciplines the parameters? For a calibrated QSM, cite the external estimates each elasticity comes from and report counterfactual sensitivity to the least-credible one. For an estimated model, name the moment or reduced-form variation that identifies each parameter (this hands off to jue-identification). Either way, the counterfactual's credibility is only as strong as the weakest-identified elasticity — surface it rather than hiding it in an appendix.
A recurring JUE referee question is whether your setting is an open city (migration equalizes utility, so local shocks capitalize into land and dissipate in welfare terms) or a closed economy (population fixed, effects fall on prices and quantities differently). The choice changes the sign and incidence of your comparative statics: in an open-city model a local amenity gain is fully capitalized into rents with no utility change, whereas in a closed model it raises resident welfare. State which assumption you make and defend it for your geographic scale — a single metro is more open than a national system. Getting this wrong is a common interpretation error referees flag.
A paper estimates that a zoning relaxation raised housing units in treated tracts. Reduced form alone cannot say whether welfare rose, because households re-sort and rents adjust elsewhere. The JUE theory move: embed the estimate in a small spatial-equilibrium model with mobility and housing supply, calibrate the supply elasticity to the reduced-form response and the migration elasticity to prior estimates, and report the welfare counterfactual with sensitivity to the migration elasticity (the least-identified parameter). The model shows the local rent decline is partly undone by in-migration — a comparative static the data then supports.
JUE referees punish theory that is either missing or overgrown. A reduced-form paper usually needs only a compact framework — a few equations stating the indifference/zero-profit conditions and the comparative static the data tests — placed before the empirics so the estimate has meaning when it arrives. A structural paper carries a fuller model but should still front-load the intuition and relegate derivations to an appendix. The test in both cases: remove the model and ask whether any estimate changes meaning. If nothing changes, the model is decoration; if the magnitude becomes uninterpretable, the model is load-bearing and belongs in the main text.
【Claim type】capitalization / agglomeration / QSM-counterfactual / sorting / market-access
【Model chosen】one line — and why this much model
【Equilibrium conditions】indifference / zero-profit / clearing respected? [Y/N]
【Incidence】land / labor / firms
【Run vs long-run】short-run (fixed location) vs long-run (re-sorting)
【QSM params → data】each elasticity tied to a moment; sensitivity reported?
【Comparative static tested】[...]
【Next skill】jue-robustness© brycewang-stanford, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in Journal-of-Urban-Economics-Skills/skills/jue-theory-model of brycewang-stanford/Awesome-Journal-Skills.
Open the folder on GitHubat commit 932eb23
Jue Theory Model next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Jue Theory Model this skillbrycewang-stanford/Awesome-Journal-Skills | 1.2k | — | ~2.1k | Automated safety check: Pass | MIT | |
| Bio Spatial Transcriptomics Spatial StatisticsFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.8k | Automated safety check: Pass | None | |
| Bio Spatial Transcriptomics Spatial NeighborsFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.6k | Automated safety check: Pass | None | |
| Bio Spatial Transcriptomics Spatial DomainsFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~2.1k | Automated safety check: Pass | None | |
| Bio Spatial Transcriptomics Spatial VisualizationFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~2k | Automated safety check: Pass | None | |
| Bio Spatial Transcriptomics Spatial PreprocessingFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~2k | Automated safety check: Pass | None |
FreedomIntelligence/OpenClaw-Medical-Skills
Compute spatial statistics for spatial transcriptomics data using Squidpy.
FreedomIntelligence/OpenClaw-Medical-Skills
Build spatial neighbor graphs for spatial transcriptomics data using Squidpy.
FreedomIntelligence/OpenClaw-Medical-Skills
Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy.
FreedomIntelligence/OpenClaw-Medical-Skills
Visualize spatial transcriptomics data using Squidpy and Scanpy.
FreedomIntelligence/OpenClaw-Medical-Skills
Quality control, filtering, normalization, and feature selection for spatial transcriptomics data.
FreedomIntelligence/OpenClaw-Medical-Skills
Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution.
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running and reporting the analysis for an Annals of the American Association of Geographers manuscript — spatial statistics and modeling, remote-sensing accuracy, or…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when positioning an Annals of the American Association of Geographers manuscript in the literature — engaging geographic scholarship across the relevant area and the…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when responding to an Annals of the American Association of Geographers decision letter (major/minor revision) — building a point-by-point response to the subject editor and…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when defending the research design of an Annals of the American Association of Geographers manuscript — spatial/quantitative analysis and GIScience, remote-sensing and…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when you need to understand how the Annals of the American Association of Geographers evaluates a manuscript — double-anonymous review routed through a subject editor by…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running the final pre-submission preflight for the Annals of the American Association of Geographers via ScholarOne Manuscripts — area/article-type selection…
A skill your agent uses when a Journal of Urban Economics (JUE) manuscript needs a spatial model to interpret its mechanism — a spatial-equilibrium frame, a sorting model, or a quantitative spatial…. Jue Theory Model is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when a Journal of Urban Economics (JUE) manuscript needs a spatial model to interpret its mechanism — a spatial-equilibrium frame, a sorting model, or a quantitative spatial model (QSM) for counterfactuals.
Jue Theory Model fits situations like: A Journal of Urban Economics (JUE) manuscript needs a spatial model to interpret its mechanism — a spatial-equilibrium frame; A sorting model; A quantitative spatial model (QSM) for counterfactuals.
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a claude-code`. Or copy the skill folder (Journal-of-Urban-Economics-Skills/skills/jue-theory-model in brycewang-stanford/Awesome-Journal-Skills) into .claude/skills/jue-theory-model in your project. Claude Code loads it when a task matches its description.
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a codex`. Or copy the skill folder (Journal-of-Urban-Economics-Skills/skills/jue-theory-model in brycewang-stanford/Awesome-Journal-Skills) into .agents/skills/jue-theory-model in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jue-theory-model -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/jue-theory-model, .gemini/skills/jue-theory-model, .github/skills/jue-theory-model and .opencode/skills/jue-theory-model in your project.
SKILL.md names no scripts, command-line tools or credentials: Jue Theory Model is instructions for the agent only.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Jue Theory Model is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 2.1k tokens (SKILL.md is roughly 8.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Jue Theory Model: Bio Spatial Transcriptomics Spatial Statistics (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars), Bio Spatial Transcriptomics Spatial Neighbors (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars), Bio Spatial Transcriptomics Spatial Domains (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars) and Bio Spatial Transcriptomics Spatial Visualization (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Awesome-Journal-Skills, which has 1,231 GitHub stars. The repository holds 2,387 skills in this directory. The repository was last updated on September 27, 2026.
Source: brycewang-stanford/Awesome-Journal-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.