CHARLS Paper Reproduction Guide
xjtulyc/MedgeClaw
Guides an agent through reproducing papers built on the CHARLS health and retirement survey, from variable mapping to cognition, depression and isolation scores.
Agent skill
by brycewang-stanford in brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when assembling the data, code, and access documentation for a Journal of Health Economics (JHE) manuscript — where much health data is restricted (claims, administrative…
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jhe-replication-package --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Journal-of-Health-Economics-Skills/skills/jhe-replication-package .claude/skills/jhe-replication-package && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "jhe-replication-package" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Health-Economics-Skills/skills/jhe-replication-package into .claude/skills/jhe-replication-package/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jhe-replication-package", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Health-Economics-Skills/skills/jhe-replication-packageType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jhe-replication-package --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/Journal-of-Health-Economics-Skills/skills/jhe-replication-package .agents/skills/jhe-replication-package && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "jhe-replication-package" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Health-Economics-Skills/skills/jhe-replication-package into .agents/skills/jhe-replication-package/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jhe-replication-package", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jhe-replication-package --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/Journal-of-Health-Economics-Skills/skills/jhe-replication-package .cursor/skills/jhe-replication-package && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "jhe-replication-package" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Health-Economics-Skills/skills/jhe-replication-package into .cursor/skills/jhe-replication-package/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jhe-replication-package", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/brycewang-stanford/Awesome-Journal-Skills.git --path Journal-of-Health-Economics-Skills/skills/jhe-replication-package--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jhe-replication-package --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/Journal-of-Health-Economics-Skills/skills/jhe-replication-package .gemini/skills/jhe-replication-package && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "jhe-replication-package" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Health-Economics-Skills/skills/jhe-replication-package into .gemini/skills/jhe-replication-package/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jhe-replication-package", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jhe-replication-packageInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/Journal-of-Health-Economics-Skills/skills/jhe-replication-package .github/skills/jhe-replication-package && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "jhe-replication-package" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Health-Economics-Skills/skills/jhe-replication-package into .github/skills/jhe-replication-package/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jhe-replication-package", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills jhe-replication-package --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/Journal-of-Health-Economics-Skills/skills/jhe-replication-package .opencode/skills/jhe-replication-package && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "jhe-replication-package" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/Journal-of-Health-Economics-Skills/skills/jhe-replication-package into .opencode/skills/jhe-replication-package/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jhe-replication-package", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
jhe-replication-packageA skill your agent uses when assembling the data, code, and access documentation for a Journal of Health Economics (JHE) manuscript — where much health data is restricted (claims, administrative…
Jhe Replication Package is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when assembling the data, code, and access documentation for a Journal of Health Economics (JHE) manuscript — where much health data is restricted (claims, administrative, EHR) and the journal's policy encourages rather than mandates deposit. Packages reproducibility and a credible restricted-data access path; it does not run the analysis.
Its SKILL.md is about 1.9k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Econometrics and empirical research, Health and fitness tracking and Clinical and healthcare research. The repository describes itself as: Journal-specific Claude Code/Codex skill packs covering mainstream journals — AER, QJE, Nature, Cell, 管理世界, 经济研究 & 200+ more — your fast track to getting published. | 覆盖主流期刊的… The licence is MIT.
6 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 932eb23. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Jhe Replication Package loads about 1.9k tokens when it runs. Until then it costs about 92 tokens; SKILL.md has 967 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from brycewang-stanford/Awesome-Journal-Skills at commit 932eb23, republished under its MIT licence (© brycewang-stanford). 967 words, ~1,943 tokens.
.claude/skills/jhe-replication-package/SKILL.md (or your agent's skills folder).JHE follows the Elsevier Research Data policy: authors are encouraged to deposit data in a repository and to state data availability at submission — this is not the AEA's mandatory pre-publication openICPSR build-and-verify gate (检索于 2026-06;以官网为准). That softer baseline is precisely why credibility here rests on how well you document the path to reproduction, not on a public dataset that often cannot exist. The health-economics reality is that most rich data is restricted by privacy law (HIPAA), Data Use Agreements, and IRB. The professional standard JHE referees increasingly expect: code is shareable even when data is not, the Data Availability Statement is honest and specific, and another researcher could in principle obtain the same data and re-run the code.
| Data tier | What to deposit | What to document |
|---|---|---|
| Public (NHANES, BRFSS, MEPS public-use) | data + code + README; aim for a one-command rebuild | exact extract/version, vintage, derivation code |
| Restricted but obtainable (CMS VRDC, state HCUP/SID, claims via DUA) | code + full DAS; synthetic or simulated extract if licensing allows | the application process, DUA terms, cost, approximate wait, contact |
| IRB / enclave-only (EHR, linked admin, secure enclave) | code + access protocol; results-only outputs | IRB approval, enclave rules, what can leave the enclave |
Because JHE only encourages deposit rather than running a mandatory pre-publication build-and-verify, the burden of credibility shifts onto the author. There is no Data Editor who will catch a broken pipeline before publication, which cuts both ways: less friction at acceptance, but a higher reputational cost if a reader later cannot reproduce your work from the materials you provided. Treat the package as your own quality control — a colleague should be able to run the public portions today and, with the documented access path, rebuild the restricted portions later. That standard, not the letter of the policy, is what protects the paper.
Name the holder and mechanism precisely; "available on request" is not a path. Typical JHE data and how to describe access:
The DAS should let a reader estimate the cost, time, and eligibility to obtain the same data — that is what substitutes for a public deposit at JHE.
A paper uses 100% Medicare claims through the CMS VRDC enclave; the data cannot be deposited. A weak package says "data available from CMS." The JHE-credible package: a DAS naming the VRDC, the DUA application path, the approximate fee and multi-month wait, and the enclave's output-review rules; the full cleaning/construction/analysis code with a master script and a manifest mapping Tables 1–5 and Figures 1–3 to scripts; a pinned software environment with seeds; and a small simulated extract (structure only, no real records) so a reader can dry-run the code before obtaining access. Reproduction is now a documented, auditable path despite zero public data.
【Journal】Journal of Health Economics
【Skill】jhe-replication-package
【Data tier】public / restricted-obtainable / IRB-enclave
【DAS】names data, holder, mechanism, cost/wait? [Y/N]
【Code】shared + master script + exhibit-to-code manifest? [Y/N]
【Environment】versions/packages/seeds pinned? [Y/N]
【Privacy】small-cell suppression, no PHI in package? [Y/N]
【Policy note】Elsevier "encouraged" deposit (检索于 2026-06;以官网为准)
【Next skill】jhe-referee-strategyThis skill assembles and documents the data/code package and the Data Availability Statement; it does not run or re-run the analysis. Build it once the exhibits are stable (after jhe-tables-figures / jhe-robustness) so the exhibit-to-code manifest does not drift. When the package is honest and auditable, hand off to jhe-referee-strategy to pre-empt the reproducibility objection before submission.
© brycewang-stanford, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in Journal-of-Health-Economics-Skills/skills/jhe-replication-package of brycewang-stanford/Awesome-Journal-Skills.
Open the folder on GitHubat commit 932eb23
Jhe Replication Package next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Jhe Replication Package this skillbrycewang-stanford/Awesome-Journal-Skills | 1.2k | — | ~1.9k | Automated safety check: Pass | MIT | |
| CHARLS Paper Reproduction Guidexjtulyc/MedgeClaw | 617 | 1 repos | ~1.8k | Automated safety check: Pass | None | |
| Hypogenicdavila7/claude-code-templates | 32k | 10 repos | ~5.4k | Automated safety check: Pass | MIT | |
| PacsomaticK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~1.6k | Automated safety check: Pass | MIT | |
| Replication Packagepedrohcgs/claude-code-my-workflow | 1.7k | — | ~2.8k | Automated safety check: Notes | MIT | |
| Audit Reproducibilitypedrohcgs/claude-code-my-workflow | 1.7k | — | ~6.4k | Automated safety check: Notes | MIT |
xjtulyc/MedgeClaw
Guides an agent through reproducing papers built on the CHARLS health and retirement survey, from variable mapping to cognition, depression and isolation scores.
davila7/claude-code-templates
Automated hypothesis generation and testing using large language models.
K-Dense-AI/scientific-agent-skills
Prepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows from unaligned BAM inputs.
pedrohcgs/claude-code-my-workflow
Assemble a submission-ready replication package to the AEA Data and Code Availability Standard (DCAS) / openICPSR / Social Science Reproduction Platform expectations — standard replication README…
pedrohcgs/claude-code-my-workflow
Enforce the replication-protocol.md rule by cross-checking numeric claims in a manuscript against the actual R / Stata / Python outputs.
brycewang-stanford/Auto-Empirical-Research-Skills
This skill covers reproducible research pipelines and replication packages.
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running and reporting the analysis for an Annals of the American Association of Geographers manuscript — spatial statistics and modeling, remote-sensing accuracy, or…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when positioning an Annals of the American Association of Geographers manuscript in the literature — engaging geographic scholarship across the relevant area and the…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when responding to an Annals of the American Association of Geographers decision letter (major/minor revision) — building a point-by-point response to the subject editor and…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when defending the research design of an Annals of the American Association of Geographers manuscript — spatial/quantitative analysis and GIScience, remote-sensing and…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when you need to understand how the Annals of the American Association of Geographers evaluates a manuscript — double-anonymous review routed through a subject editor by…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running the final pre-submission preflight for the Annals of the American Association of Geographers via ScholarOne Manuscripts — area/article-type selection…
Categories
A skill your agent uses when assembling the data, code, and access documentation for a Journal of Health Economics (JHE) manuscript — where much health data is restricted (claims, administrative…. Jhe Replication Package is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when assembling the data, code, and access documentation for a Journal of Health Economics (JHE) manuscript — where much health data is restricted (claims, administrative, EHR) and the journal's policy encourages rather than mandates deposit.
Jhe Replication Package fits situations like: assembling the data; access documentation for a Journal of Health Economics (JHE) manuscript — where much health data is restricted (claims; EHR) and the journals policy encourages rather than mandates deposit.
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a claude-code`. Or copy the skill folder (Journal-of-Health-Economics-Skills/skills/jhe-replication-package in brycewang-stanford/Awesome-Journal-Skills) into .claude/skills/jhe-replication-package in your project. Claude Code loads it when a task matches its description.
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a codex`. Or copy the skill folder (Journal-of-Health-Economics-Skills/skills/jhe-replication-package in brycewang-stanford/Awesome-Journal-Skills) into .agents/skills/jhe-replication-package in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill jhe-replication-package -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/jhe-replication-package, .gemini/skills/jhe-replication-package, .github/skills/jhe-replication-package and .opencode/skills/jhe-replication-package in your project.
SKILL.md names no scripts, command-line tools or credentials: Jhe Replication Package is instructions for the agent only.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Jhe Replication Package is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.9k tokens (SKILL.md is roughly 7.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Jhe Replication Package: CHARLS Paper Reproduction Guide (xjtulyc/MedgeClaw, 617 stars), Hypogenic (davila7/claude-code-templates, 32k stars), Pacsomatic (K-Dense-AI/scientific-agent-skills, 48k stars) and Replication Package (pedrohcgs/claude-code-my-workflow, 1.7k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Awesome-Journal-Skills, which has 1,228 GitHub stars. The repository holds 2,387 skills in this directory. The repository was last updated on September 27, 2026.
Source: brycewang-stanford/Awesome-Journal-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.