Literature Review
K-Dense-AI/scientific-agent-skills
Runs systematic, scoping or narrative literature reviews across PubMed, arXiv, bioRxiv and Semantic Scholar, with citation checks and Markdown or PDF output.
A skill your agent uses when hardening a FOCS (IEEE Symposium on Foundations of Computer Science) paper's checkability — the theory analogue of reproducibility — via hypothesis ledgers…
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills focs-reproducibility --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/FOCS-Skills/skills/focs-reproducibility .claude/skills/focs-reproducibility && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "focs-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/FOCS-Skills/skills/focs-reproducibility into .claude/skills/focs-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "focs-reproducibility", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/FOCS-Skills/skills/focs-reproducibilityType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills focs-reproducibility --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/FOCS-Skills/skills/focs-reproducibility .agents/skills/focs-reproducibility && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "focs-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/FOCS-Skills/skills/focs-reproducibility into .agents/skills/focs-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "focs-reproducibility", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills focs-reproducibility --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/FOCS-Skills/skills/focs-reproducibility .cursor/skills/focs-reproducibility && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "focs-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/FOCS-Skills/skills/focs-reproducibility into .cursor/skills/focs-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "focs-reproducibility", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/brycewang-stanford/Awesome-Journal-Skills.git --path FOCS-Skills/skills/focs-reproducibility--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills focs-reproducibility --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/FOCS-Skills/skills/focs-reproducibility .gemini/skills/focs-reproducibility && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "focs-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/FOCS-Skills/skills/focs-reproducibility into .gemini/skills/focs-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "focs-reproducibility", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills focs-reproducibilityInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/FOCS-Skills/skills/focs-reproducibility .github/skills/focs-reproducibility && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "focs-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/FOCS-Skills/skills/focs-reproducibility into .github/skills/focs-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "focs-reproducibility", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install brycewang-stanford/Awesome-Journal-Skills focs-reproducibility --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Awesome-Journal-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/FOCS-Skills/skills/focs-reproducibility .opencode/skills/focs-reproducibility && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "focs-reproducibility" agent skill from https://github.com/brycewang-stanford/Awesome-Journal-Skills/tree/main/FOCS-Skills/skills/focs-reproducibility into .opencode/skills/focs-reproducibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "focs-reproducibility", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
focs-reproducibilityA skill your agent uses when hardening a FOCS (IEEE Symposium on Foundations of Computer Science) paper's checkability — the theory analogue of reproducibility — via hypothesis ledgers…
Focs Reproducibility is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when hardening a FOCS (IEEE Symposium on Foundations of Computer Science) paper's checkability — the theory analogue of reproducibility — via hypothesis ledgers, single-source theorem statements that cannot drift between submission and arXiv versions, audits of imported theorems, and certificates for machine-checked steps.
Its SKILL.md is about 1.4k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Reproducible research and Academic paper search. It works with arXiv. The repository describes itself as: Journal-specific Claude Code/Codex skill packs covering mainstream journals — AER, QJE, Nature, Cell, 管理世界, 经济研究 & 200+ more — your fast track to getting published. | 覆盖主流期刊的… The licence is MIT.
5 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 932eb23. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are bash).
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Focs Reproducibility loads about 1.4k tokens when it runs. Until then it costs about 87 tokens; SKILL.md has 700 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from brycewang-stanford/Awesome-Journal-Skills at commit 932eb23, republished under its MIT licence (© brycewang-stanford). 700 words, ~1,354 tokens.
.claude/skills/focs-reproducibility/SKILL.md (or your agent's skills folder).FOCS has no reproducibility checklist and asks for no artifacts (2026 CFP, checked 2026-07-08). At a proofs venue, "reproducing" a result means an independent expert can re-derive it from the paper alone. That property — checkability — is engineerable, and papers engineered for it survive both refereeing and the decade of scrutiny that follows a FOCS acceptance. Four practices below build it.
Every assumption a theorem consumes should be visible at the theorem, not scattered across ambient conventions declared in Section 2. Keep a ledger during writing:
| Hypothesis | Introduced | Used by | Discharged or standing? |
|---|---|---|---|
| $G$ simple, connected | §2 conventions | Thm 1, 3; Lem 4.2 | standing |
| $\varepsilon < 1/\log n$ | Thm 3 statement | Lem 5.1–5.4 | standing — stated in Thm 3 ✓ |
| oracle access to exact eigenvalues | §5 ¶1 (silent!) | Lem 5.3 | must surface in Thm 3 |
The audit question for each row: does the formal statement of every theorem that transitively needs this hypothesis mention it? Silent standing hypotheses are the most common correctness complaint theory referees file, and the cheapest to fix before submission.
A FOCS project lives as at least three documents — the HotCRP submission, the arXiv/ECCC full version, and eventually the IEEE proceedings version. Theorem statements must be bit-identical across them; a bound that strengthens silently between submission and arXiv is, to a referee who checks, either sloppiness or misconduct. Enforce the freeze mechanically by extracting and diffing labeled statements:
# extract_statements.sh — run against any two versions of the source
for src in "$1" "$2"; do
awk '/\\begin{(theorem|lemma|corollary)/,/\\end{(theorem|lemma|corollary)/' \
"$src"/*.tex | tr -d ' \n' | sha256sum
done
# identical hashes => no drift in any formal statementLegitimate post-submission improvements go into a dated "changes since
submission" note in the arXiv version, never into silent edits (see
focs-camera-ready for the endgame version ledger).
Most FOCS proofs stand on external results, and the failure mode is citing a theorem for slightly more than it says. Before the freeze, audit every import:
focs-related-work).When a proof step is a computation (focs-experiments), checkability means a
stranger can re-verify without trusting your code: publish the certificate
(the enumerated cases, the SAT solver's proof trace, the exact rational
arithmetic transcript), ship a minimal independent checker, pin both with
hashes, and state in the proof what object certifies what claim. A referee
who can re-run a 40-line checker in a minute treats the step as proved; one
who is asked to trust an opaque 4,000-line search does not.
Checkability extends past acceptance. FOCS papers are cited for decades, and the community's memory of an error is shaped by how it was handled:
Run as a dedicated pass, separate from proofreading:
A paper passing all five is not guaranteed acceptance; it is guaranteed not to be rejected for the reasons authors most regret, and it is camera-ready for the public record that FOCS culture expects the full version to become.
© brycewang-stanford, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in FOCS-Skills/skills/focs-reproducibility of brycewang-stanford/Awesome-Journal-Skills.
Open the folder on GitHubat commit 932eb23
Focs Reproducibility next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Focs Reproducibility this skillbrycewang-stanford/Awesome-Journal-Skills | 1.2k | — | ~1.4k | Automated safety check: Pass | MIT | |
| Literature ReviewK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~3.2k | Automated safety check: Notes | MIT | |
| Literature Search Methodologyaiming-lab/AutoResearchClaw | 15k | — | ~709 | Automated safety check: Pass | MIT | |
| Paper LensYSQ-boop/paper-lens | 101 | — | ~1.3k | Automated safety check: Pass | Apache-2.0 | |
| Read arXiv Paperkarpathy/nanochat | 59k | 1 repos | ~494 | Automated safety check: Pass | MIT | |
| Literature Reviewneflibata-feng/MyArxiv-Agent | 126 | 20 repos | ~5.9k | Automated safety check: Notes | MIT |
K-Dense-AI/scientific-agent-skills
Runs systematic, scoping or narrative literature reviews across PubMed, arXiv, bioRxiv and Semantic Scholar, with citation checks and Markdown or PDF output.
aiming-lab/AutoResearchClaw
Lays out a systematic literature review method: PICO-based search strategy, inclusion criteria, PRISMA screening, quality assessment tools and synthesis approaches.
YSQ-boop/paper-lens
Read and critically analyze one academic paper from an arXiv URL/ID or a local PDF, producing a source-grounded Markdown report that can grow from a quick read into a reviewer-level deep review.
karpathy/nanochat
Fetches the TeX source of an arXiv paper from its URL, reads it and writes a markdown summary tied to the nanochat project.
neflibata-feng/MyArxiv-Agent
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).
neflibata-feng/MyArxiv-Agent
Query and analyze scholarly literature using the OpenAlex database.
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running and reporting the analysis for an Annals of the American Association of Geographers manuscript — spatial statistics and modeling, remote-sensing accuracy, or…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when positioning an Annals of the American Association of Geographers manuscript in the literature — engaging geographic scholarship across the relevant area and the…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when responding to an Annals of the American Association of Geographers decision letter (major/minor revision) — building a point-by-point response to the subject editor and…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when defending the research design of an Annals of the American Association of Geographers manuscript — spatial/quantitative analysis and GIScience, remote-sensing and…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when you need to understand how the Annals of the American Association of Geographers evaluates a manuscript — double-anonymous review routed through a subject editor by…
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running the final pre-submission preflight for the Annals of the American Association of Geographers via ScholarOne Manuscripts — area/article-type selection…
Works with
Categories
A skill your agent uses when hardening a FOCS (IEEE Symposium on Foundations of Computer Science) paper's checkability — the theory analogue of reproducibility — via hypothesis ledgers…. Focs Reproducibility is an agent skill from brycewang-stanford/Awesome-Journal-Skills. Use when hardening a FOCS (IEEE Symposium on Foundations of Computer Science) paper's checkability — the theory analogue of reproducibility — via hypothesis ledgers, single-source theorem statements that cannot drift between submission and arXiv versions, audits of imported theorems, and certificates for machine-checked steps.
Focs Reproducibility fits situations like: single-source theorem statements that cannot drift between submission and arXiv versions; audits of imported theorems; certificates for machine-checked steps.
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a claude-code`. Or copy the skill folder (FOCS-Skills/skills/focs-reproducibility in brycewang-stanford/Awesome-Journal-Skills) into .claude/skills/focs-reproducibility in your project. Claude Code loads it when a task matches its description.
Run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a codex`. Or copy the skill folder (FOCS-Skills/skills/focs-reproducibility in brycewang-stanford/Awesome-Journal-Skills) into .agents/skills/focs-reproducibility in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Awesome-Journal-Skills --skill focs-reproducibility -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/focs-reproducibility, .gemini/skills/focs-reproducibility, .github/skills/focs-reproducibility and .opencode/skills/focs-reproducibility in your project.
SKILL.md names no scripts, command-line tools or credentials: Focs Reproducibility is instructions for the agent only.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Focs Reproducibility is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.4k tokens (SKILL.md is roughly 5.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Focs Reproducibility: Literature Review (K-Dense-AI/scientific-agent-skills, 48k stars), Literature Search Methodology (aiming-lab/AutoResearchClaw, 15k stars), Paper Lens (YSQ-boop/paper-lens, 101 stars) and Read arXiv Paper (karpathy/nanochat, 59k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Awesome-Journal-Skills, which has 1,231 GitHub stars. The repository holds 2,387 skills in this directory. The repository was last updated on September 27, 2026.
Source: brycewang-stanford/Awesome-Journal-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.