Academic Research Pipeline
Imbad0202/academic-research-skills
Orchestrates a ten-stage academic workflow from research to finished manuscript, including integrity checks, two rounds of peer review and revision.
Runs the ResearchClaw 23-stage autonomous pipeline from a topic, config file and output directory, from literature review through experiments to a written and reviewed paper.
$ npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install aiming-lab/AutoResearchClaw researchclaw --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/aiming-lab/AutoResearchClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.claude/skills/researchclaw .claude/skills/researchclaw && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "researchclaw" agent skill from https://github.com/aiming-lab/AutoResearchClaw/tree/main/.claude/skills/researchclaw into .claude/skills/researchclaw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "researchclaw", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/aiming-lab/AutoResearchClaw/tree/main/.claude/skills/researchclawType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install aiming-lab/AutoResearchClaw researchclaw --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aiming-lab/AutoResearchClaw.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.claude/skills/researchclaw .agents/skills/researchclaw && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "researchclaw" agent skill from https://github.com/aiming-lab/AutoResearchClaw/tree/main/.claude/skills/researchclaw into .agents/skills/researchclaw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "researchclaw", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install aiming-lab/AutoResearchClaw researchclaw --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aiming-lab/AutoResearchClaw.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.claude/skills/researchclaw .cursor/skills/researchclaw && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "researchclaw" agent skill from https://github.com/aiming-lab/AutoResearchClaw/tree/main/.claude/skills/researchclaw into .cursor/skills/researchclaw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "researchclaw", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/aiming-lab/AutoResearchClaw.git --path .claude/skills/researchclaw--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install aiming-lab/AutoResearchClaw researchclaw --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aiming-lab/AutoResearchClaw.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.claude/skills/researchclaw .gemini/skills/researchclaw && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "researchclaw" agent skill from https://github.com/aiming-lab/AutoResearchClaw/tree/main/.claude/skills/researchclaw into .gemini/skills/researchclaw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "researchclaw", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install aiming-lab/AutoResearchClaw researchclawInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/aiming-lab/AutoResearchClaw.git skills-src && mkdir -p .github/skills && cp -r skills-src/.claude/skills/researchclaw .github/skills/researchclaw && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "researchclaw" agent skill from https://github.com/aiming-lab/AutoResearchClaw/tree/main/.claude/skills/researchclaw into .github/skills/researchclaw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "researchclaw", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install aiming-lab/AutoResearchClaw researchclaw --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aiming-lab/AutoResearchClaw.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.claude/skills/researchclaw .opencode/skills/researchclaw && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "researchclaw" agent skill from https://github.com/aiming-lab/AutoResearchClaw/tree/main/.claude/skills/researchclaw into .opencode/skills/researchclaw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "researchclaw", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
researchclawRuns the ResearchClaw 23-stage autonomous pipeline from a topic, config file and output directory, from literature review through experiments to a written and reviewed paper.
This skill launches ResearchClaw's 23-stage pipeline, which carries a research topic through literature review, hypothesis generation, experiment design, code generation and execution, result analysis, paper writing, peer review and final export. It checks that config.yaml exists, creates it from config.researchclaw.example.yaml if not, and confirms an LLM API key is set in the config or through an environment variable.
You can run it with the researchclaw CLI, which has options for the topic, config path, output directory, resuming from a named stage and auto-approving the gate stages (5, 9 and 20), or through the Python API, including an iterative pipeline for multi-round improvement. Each stage writes into a run folder under artifacts. Experiment modes include simulated, where the LLM generates synthetic results without executing code, and sandbox, where generated code runs locally in a subprocess.
3 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit be4ba47. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are bash and python).
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
ResearchClaw Research Pipeline loads about 1k tokens when it runs. Until then it costs about 27 tokens; SKILL.md has 274 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from aiming-lab/AutoResearchClaw at commit be4ba47, republished under its MIT licence (© aiming-lab). 274 words, ~1,041 tokens.
.claude/skills/researchclaw/SKILL.md (or your agent's skills folder).Run ResearchClaw's 23-stage autonomous research pipeline. Given a research topic, this skill orchestrates the entire research workflow: literature review → hypothesis generation → experiment design → code generation & execution → result analysis → paper writing → peer review → final export.
Activate this skill when the user:
ls config.yaml || ls config.researchclaw.example.yamlconfig.yaml, create one from the example:cp config.researchclaw.example.yaml config.yamlconfig.yaml under llm.api_key or via llm.api_key_env environment variable.Option A: CLI (recommended)
researchclaw run --topic "Your research topic here" --auto-approveOptions:
--topic / -t: Override the research topic from config--config / -c: Config file path (default: config.yaml)--output / -o: Output directory (default: artifacts/rc-YYYYMMDD-HHMMSS-HASH/)--from-stage: Resume from a specific stage (e.g., PAPER_OUTLINE)--auto-approve: Auto-approve gate stages (5, 9, 20) without human inputOption B: Python API
from researchclaw.pipeline.runner import execute_pipeline
from researchclaw.config import RCConfig
from researchclaw.adapters import AdapterBundle
from pathlib import Path
config = RCConfig.load("config.yaml", check_paths=False)
results = execute_pipeline(
run_dir=Path("artifacts/my-run"),
run_id="research-001",
config=config,
adapters=AdapterBundle(),
auto_approve_gates=True,
)
# Check results
for r in results:
print(f"Stage {r.stage.name}: {r.status.value}")Option C: Iterative Pipeline (multi-round improvement)
from researchclaw.pipeline.runner import execute_iterative_pipeline
results = execute_iterative_pipeline(
run_dir=Path("artifacts/my-run"),
run_id="research-001",
config=config,
adapters=AdapterBundle(),
max_iterations=3,
convergence_rounds=2,
)After a successful run, the output directory contains:
artifacts/<run-id>/
├── stage-1/ # TOPIC_INIT outputs
├── stage-2/ # PROBLEM_DECOMPOSE outputs
├── ...
├── stage-10/
│ └── experiment.py # Generated experiment code
├── stage-12/
│ └── runs/run-1.json # Experiment execution results
├── stage-14/
│ ├── experiment_summary.json # Aggregated metrics
│ └── results_table.tex # LaTeX results table
├── stage-17/
│ └── paper_draft.md # Full paper draft
├── stage-22/
│ └── charts/ # Generated visualizations
│ ├── metric_trajectory.png
│ └── experiment_comparison.png
└── pipeline_summary.json # Overall pipeline status| Mode | Description | Config |
|---|---|---|
simulated | LLM generates synthetic results (no code execution) | experiment.mode: simulated |
sandbox | Execute generated code locally via subprocess | experiment.mode: sandbox |
ssh_remote | Execute on remote GPU server via SSH | experiment.mode: ssh_remote |
researchclaw validate --config config.yamlllm.base_url and API keyexperiment.sandbox.python_path exists and has numpy installed--auto-approve or manually approve at stages 5, 9, 20© aiming-lab, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in .claude/skills/researchclaw of aiming-lab/AutoResearchClaw.
Open the folder on GitHubat commit be4ba47
ResearchClaw Research Pipeline next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| ResearchClaw Research Pipeline this skillaiming-lab/AutoResearchClaw | 15k | — | ~1k | Automated safety check: Pass | MIT | |
| Academic Research PipelineImbad0202/academic-research-skills | 51k | — | ~15k | Automated safety check: Pass | Custom licence | |
| Academic Research Suite for CodexImbad0202/academic-research-skills-codex | 12k | — | ~12k | Automated safety check: Pass | Custom licence | |
| Autonomous Researchfedericodeponte/opendraft | 507 | — | ~8.2k | Automated safety check: Pass | Apache-2.0 | |
| Survey Paper Generatordair-ai/dair-academy-plugins | 614 | 2 repos | ~2.1k | Automated safety check: Notes | MIT | |
| Academic Integrity Rewritelin1111-1/academic-integrity-rewrite | 102 | — | ~1.1k | Automated safety check: Pass | MIT |
Imbad0202/academic-research-skills
Orchestrates a ten-stage academic workflow from research to finished manuscript, including integrity checks, two rounds of peer review and revision.
Imbad0202/academic-research-skills-codex
A router skill that sends academic work such as literature reviews, drafting, citation checks, peer review and revision to the right workflow in the ARS suite.
federicodeponte/opendraft
An 18-agent pipeline that turns one topic line into a drafted research paper, literature review, or thesis chapter.
dair-ai/dair-academy-plugins
Builds a single-file HTML survey paper on an AI or ML topic from a research bundle the agent curates, with prose and SVG figures written by Kimi K2.6.
lin1111-1/academic-integrity-rewrite
Revise Chinese or English academic writing for lower unnecessary textual overlap while preserving meaning, evidence, numbers, equations, terminology, and citations.
OpenLAIR/dr-claw
Runs multi-source web research through Google's Gemini Deep Research Agent with a bundled Python script and saves a structured, cited report as files.
aiming-lab/AutoResearchClaw
Diagnoses where an agent failed across runs and turns the findings into new skills, system prompt patches and knowledge entries, using the A-Evolve loop.
aiming-lab/AutoResearchClaw
Turns a broad metabolic modelling topic into a concrete, paper-shaped plan with organism, model, perturbations, metrics and figures before any FBA code is written.
aiming-lab/AutoResearchClaw
Runs a metabolic flux analysis from model loading to phenotype prediction and figures by handing work to four sub-agents in sequence.
aiming-lab/AutoResearchClaw
Reference patterns for writing qiskit 2.x code for variational quantum machine learning: feature maps, VQC training, VQE for chemistry, MPS circuits and noise models.
aiming-lab/AutoResearchClaw
Builds or loads a genome-scale metabolic model in COBRApy, sets its growth medium and objective, and exports it as a validated JSON file for flux analysis.
aiming-lab/AutoResearchClaw
Quick reference for Biopython work: sequence operations, SeqIO file parsing, BLAST searches, Entrez queries, phylogenetic trees and PDB structure analysis.
Works with
Categories
Runs the ResearchClaw 23-stage autonomous pipeline from a topic, config file and output directory, from literature review through experiments to a written and reviewed paper. This skill launches ResearchClaw's 23-stage pipeline, which carries a research topic through literature review, hypothesis generation, experiment design, code generation and execution, result analysis, paper writing, peer review and final export.yaml if not, and confirms an LLM API key is set in the config or through an environment variable.
ResearchClaw Research Pipeline fits situations like: producing a full research paper draft from a single topic; resuming a pipeline run from a specific stage; choosing between simulated and sandboxed experiment modes.
Run `npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a claude-code`. Or copy the skill folder (.claude/skills/researchclaw in aiming-lab/AutoResearchClaw) into .claude/skills/researchclaw in your project. Claude Code loads it when a task matches its description.
Run `npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a codex`. Or copy the skill folder (.claude/skills/researchclaw in aiming-lab/AutoResearchClaw) into .agents/skills/researchclaw in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add aiming-lab/AutoResearchClaw --skill researchclaw -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/researchclaw, .gemini/skills/researchclaw, .github/skills/researchclaw and .opencode/skills/researchclaw in your project.
SKILL.md names no scripts, command-line tools or credentials: ResearchClaw Research Pipeline is instructions for the agent only. Our summary lists: ResearchClaw installed, with the researchclaw CLI or Python package; A config.yaml with an LLM API key.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
ResearchClaw Research Pipeline is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1k tokens (SKILL.md is roughly 4.2k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with ResearchClaw Research Pipeline: Academic Research Pipeline (Imbad0202/academic-research-skills, 51k stars), Academic Research Suite for Codex (Imbad0202/academic-research-skills-codex, 12k stars), Autonomous Research (federicodeponte/opendraft, 507 stars) and Survey Paper Generator (dair-ai/dair-academy-plugins, 614 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
aiming-lab (a GitHub organization) maintains it in aiming-lab/AutoResearchClaw, which has 14,602 GitHub stars. The repository holds 34 skills in this directory. The repository was last updated on August 19, 2026.
Source: aiming-lab/AutoResearchClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.