Search
JimLiu/science-skills
Skills
Sort:BestMost starsTrending todayTrending this weekTrending this monthNewestRecently updatedName
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | 1.Esmfold2 Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. | JimLiu/ | 228 | 4 repos | ~2.5k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 2 | Set up a compute environment on a remote provider so Claude Science jobs can run there. | JimLiu/ | 228 | 2 repos | ~4.4k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 3 | 3.Borzoi Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. | JimLiu/ | 228 | 4 repos | ~973 | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 4 | 4.Evo2 Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. | JimLiu/ | 228 | 4 repos | ~1.3k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 5 | Embed proteins with Meta AI's ESM-2 (fair-esm package). An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 4 repos | ~1.2k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 6 | Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. | JimLiu/ | 228 | 4 repos | ~1.8k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 7 | 7.Scgpt Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. | JimLiu/ | 228 | 4 repos | ~1.3k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 8 | Register a model service in the managed family — a local model server container the daemon starts/stops on demand, or a remote upstream model API (https). | JimLiu/ | 228 | 2 repos | ~2.7k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 9 | 9.Diffdock Predict small-molecule binding poses with DiffDock-L (Corso et al. | JimLiu/ | 228 | 4 repos | ~1.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 10 | 10.PDF Explore A skill your agent uses when the user has attached a PDF, paper, report, or other document and the answer needs content from more than one place in it: summarize the methods or any other section… | JimLiu/ | 228 | 2 repos | ~3.6k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 11 | Generate a therapeutic indication dossier. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 4 repos | ~1.4k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 12 | 12.Alphafold2 Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. | JimLiu/ | 228 | 4 repos | ~1.2k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 13 | 13.Boltz Structure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. | JimLiu/ | 228 | 4 repos | ~1.3k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 14 | 14.Chai1 Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab). | JimLiu/ | 228 | 4 repos | ~1.2k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 15 | 15.Ligandmpnn Inverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. | JimLiu/ | 228 | 4 repos | ~1.5k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 16 | 16.Proteinmpnn Inverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. | JimLiu/ | 228 | 4 repos | ~1.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 17 | 17.Scvi Tools Probabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised label transfer, and Bayesian differential expression. | JimLiu/ | 228 | 4 repos | ~2.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 18 | 18.Solublempnn Inverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al. | JimLiu/ | 228 | 4 repos | ~1.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 19 | 19.Figure Style Publication-grade figure correctness and legibility rules. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 3 repos | ~4.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 20 | Find, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews. | JimLiu/ | 228 | 4 repos | ~2.7k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 21 | Compose one publication-grade multi-panel figure. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 2 repos | ~1.7k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 22 | Claude Science's own session database schema and SDK surface for introspection via host.query(). | JimLiu/ | 228 | 2 repos | ~3.4k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 23 | Run GPU jobs on the user's own Modal account via host.compute.create('byoc:modal', ...). | JimLiu/ | 228 | 2 repos | ~11k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 24 | Judge and reshape the STORY a paper's figures tell. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 2 repos | ~669 | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 25 | 25.Customize Create, configure, and maintain custom agent profiles and author new skills via the repl tool. | JimLiu/ | 228 | 2 repos | ~5.4k | Automated safety check: Warn | Apache-2.0 | 3 mo ago |
| 26 | Call a registered model endpoint over its native HTTP API from the endpoint's scoped inference kernel (BASEURL preloaded). | JimLiu/ | 228 | 3 repos | ~435 | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 27 | Submit→waitfornotification→harvest workflow for the user's SSH/SLURM hosts. | JimLiu/ | 228 | 3 repos | ~4.9k | Automated safety check: Warn | Apache-2.0 | 3 mo ago |
