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BioTender-max/awesome-bio-agent-skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Critically review, score, compare, and rank one or more AI scientist outputs for biology, bioinformatics, computational life science, or adjacent research tasks. | BioTender-max/ | 200 | — | ~2.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 2 | Web toolkit powered by Exa, tuned for scientific and technical content. | BioTender-max/ | 200 | — | ~1.2k | Automated safety check: Notes | MIT | 3 mo ago |
| 3 | Queries JGI Lakehouse (Dremio) for genomics metadata from GOLD, IMG, Mycocosm, Phytozome. | BioTender-max/ | 200 | — | ~3.7k | Automated safety check: Pass | Unknown | 3 mo ago |
| 4 | Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. | BioTender-max/ | 200 | — | ~1.3k | Automated safety check: Pass | MIT | 3 mo ago |
| 5 | Assess paper and journal impact using OpenAlex citation counts, optional Altmetric data, and curated journal impact-factor references. | BioTender-max/ | 200 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6 | Search arXiv preprints through the official arXiv API and turn arXiv IDs into local Markdown summaries. | BioTender-max/ | 200 | — | ~2.9k | Automated safety check: Pass | Unknown | 3 mo ago |
| 7 | Search bioRxiv preprints through the official bioRxiv API and locally filter titles, abstracts, and authors for keyword queries. | BioTender-max/ | 200 | — | ~2.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 8 | Query the Crossref REST API for DOI validation, title search, citation metadata, and bibliography audits. | BioTender-max/ | 200 | — | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 9 | 9.Pyhealth Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality… | BioTender-max/ | 200 | — | ~1.8k | Automated safety check: Pass | Unknown | 3 mo ago |
| 10 | 10.Adaptyv How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. | BioTender-max/ | 200 | — | ~1.9k | Automated safety check: Notes | Unknown | 3 mo ago |
| 11 | AlphaFold2 / AlphaFold-Multimer structure prediction for validation and confidence scoring. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Pass | MIT | 3 mo ago |
| 12 | Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation. | BioTender-max/ | 200 | 1 repo | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 13 | Binder design tool selection and workflow routing guidance. An agent skill from BioTender-max/awesome-bio-agent-skills. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Pass | MIT | 3 mo ago |
| 14 | Decision framework for manual marker-based, automated (CellTypist), and reference-based (popV) cell type annotation in scRNA-seq. | BioTender-max/ | 200 | 1 repo | ~7.7k | Automated safety check: Pass | CC-BY-4.0 | 3 mo ago |
| 15 | Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation. | BioTender-max/ | 200 | 1 repo | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 16 | End-to-end protein design pipeline guide across preparation, generation, validation, and filtering. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Pass | MIT | 3 mo ago |
| 17 | Run a multi-agent scientific manuscript review with parallel specialist reviewers, disagreement checks, and an editor meta-review. | BioTender-max/ | 200 | — | ~2.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 18 | 18.Modal Cloud computing platform for running Python on GPUs and serverless infrastructure. | BioTender-max/ | 200 | — | ~3.1k | Automated safety check: Notes | Apache-2.0 | 3 mo ago |
| 19 | Protein design quality control, filtering thresholds, and ranking guidance. | BioTender-max/ | 200 | — | ~2.6k | Automated safety check: Pass | MIT | 3 mo ago |
| 20 | Proteina-Complexa flow-based protein backbone generation with fold-conditioned sampling guidance. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Notes | MIT | 3 mo ago |
| 21 | Guide for building Graph Neural Networks with PyTorch Geometric (PyG). | BioTender-max/ | 200 | — | ~4.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 22 | Chai-1 structure prediction for protein complexes and design validation. | BioTender-max/ | 200 | — | ~1.7k | Automated safety check: Pass | MIT | 3 mo ago |
| 23 | 23.Notebooks Author, execute, and deliver reproducible analysis notebooks in marimo (default) or Jupyter, with all cells run end-to-end and figures embedded. | BioTender-max/ | 200 | — | ~2.9k | Automated safety check: Pass | Unknown | 3 mo ago |
