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PyTorch · Bioinformatics
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | 1.Borzoi Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. | JimLiu/ | 228 | 4 repos | ~973 | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 2 | Routes agents to the right tangermeme reference for analyzing trained genomic deep learning models, from attributions and motif experiments to variant effects and design. | jmschrei/ | 318 | — | ~1.6k | Automated safety check: Pass | MIT | today |
| 3 | Fine-tune or transfer-learn AlphaGenome-PyTorch on custom genomic data — pick a mode (linear probe, LoRA, Locon, full), train on BigWig tracks with agt finetune, use adapters, delta checkpoints… | genomicsxai/ | 162 | — | ~1k | Automated safety check: Pass | Apache-2.0 | 25 days ago |
| 4 | Run AlphaGenome-PyTorch to get genomic track predictions — via the agt predict CLI (single locus, BED regions, whole chromosomes, raw FASTA sequences, or per-gene count tables/AnnData), variant… | genomicsxai/ | 162 | — | ~868 | Automated safety check: Pass | Apache-2.0 | 25 days ago |
| 5 | Query CZ CELLxGENE Census (61M+ cells). An agent skill from davila7/claude-code-templates. | davila7/ | 33k | 11 repos | ~3.8k | Automated safety check: Pass | MIT | today |
| 6 | A skill your agent uses when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels… | xuzhougeng/ | 1k | — | ~3.7k | Automated safety check: Pass | AGPL-3.0 | yesterday |
