Python · For data scientists

Sequence-based deep learning for ATAC-seq using chromBPNet, BPNet, scBasset, or Enformer.

GPTomics/bioSkills

Predict RBP binding from RNA sequence using deep learning models (RBPNet sequence-to-signal, RNAProt RNN, GraphProt2 GCN with structure, DeepCLIP, DeepRiPe multi-modal CNN) for variant-effect…

GPTomics/bioSkills

Normalize read-depth copy-ratio profiles and segment them into copy-number regions using circular binary segmentation (CBS, DNAcopy), hidden Markov models, HaarSeg, and fused-lasso methods.

GPTomics/bioSkills

Build circular genome visualizations using circlize (R), pyCirclize (Python), or Circos (Perl CLI) with ideogram tracks, multi-data tracks (scatter, histogram, heatmap), chord/link arcs for…

GPTomics/bioSkills

Plot per-group distributions of continuous data using boxplots, violins, beeswarms, quasirandom jitter, and raincloud plots with sample-size honesty (Weissgerber 2015), KDE-bandwidth awareness, and…

GPTomics/bioSkills

Build Sankey, alluvial, river, and CONSORT-style flow diagrams to visualize cohort transitions, cell-state changes, or pipeline filtering using ggalluvial, networkD3, plotly, and consort.

GPTomics/bioSkills

Build interactive HTML/web visualizations with plotly (Python/R), bokeh (Python), and gganimate/plotly frames for animation, with awareness of current Kaleido static-export model (post-orca-EOL)…

GPTomics/bioSkills

Build publication-quality figures with matplotlib using the object-oriented Figure/Axes API, constrainedlayout, rcParams customization, TrueType (Type-42) font embedding for journal submission, and…

GPTomics/bioSkills

Compose multi-panel publication figures with patchwork, cowplot, gridExtra (R), or matplotlib GridSpec/subfigures (Python) including shared axes/legends/guides collection, panel labels in…

GPTomics/bioSkills

Visualize biological networks (PPI, gene-regulatory, co-expression, pathway) with layout algorithm choice (ForceAtlas2, Fruchterman-Reingold, Kamada-Kawai, hive plots), edge bundling…

GPTomics/bioSkills

Build OncoPrint and co-mutation matrix plots from somatic-variant cohorts using ComplexHeatmap, maftools, and comut.py with alteration-type stacking, sample ordering by mutational burden…

GPTomics/bioSkills

Build sequence logos from aligned DNA, RNA, or protein motifs using ggseqlogo (R), Logomaker (Python), or WebLogo with explicit bits vs probability encoding, background-frequency correction, custom…

GPTomics/bioSkills

Add p-value brackets, significance asterisks, and effect-size annotations to distribution plots using ggpubr, ggsignif, and statannotations with correct test selection (parametric vs non-parametric…

GPTomics/bioSkills

Build UpSet plots to visualize set intersections beyond 4 sets (where Venn fails) using ComplexUpset (modern, ggplot2-grammar) or the unmaintained UpSetR, with explicit cardinality vs degree…

GPTomics/bioSkills

Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data.

GPTomics/bioSkills

Analyze a supplied scientific-figure image (PNG, JPEG, TIFF, or a rasterized figure), identify its chart type and visual grammar, infer axes and styling, and deliver a close Python/Matplotlib or…

franklee16/academic-research-skills

Azure Monitor Query SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Azure AI Search SDK for Python. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

Manages GenAI tuning jobs in Agent Platform. An agent skill from google/skills.

google/skills

Provides guidance for authoring Apache Airflow DAGs in Managed Service for Apache Airflow (MSAA; formerly Cloud Composer).

google/skills

Migrates an LLM caller from services/llm-gateway to PostHog/ai-gateway.

PostHog/posthog

C-optimized technical analysis with 150+ functions and 61 candlestick pattern recognition functions via TA-Lib

agiprolabs/claude-trading-skills

A skill your agent uses when sculpting in Blender through Python: sculpt a head, face or bust, a stylized or cartoon character, a creature or a realistic portrait; block out from primitives; cut…

scenario-labs/skills

Use the bundled R and Python runtime guide. An agent skill from Jinze-Lee/codex-skills-workbench.

Jinze-Lee/codex-skills-workbench

Authors Apache Airflow DAGs declaratively from dag-factory YAML configs.

astronomer/agents

Builds, packs, and deploys compiled Airflow Go SDK bundles so the ExecutableCoordinator can run them.

astronomer/agents

Dutch volleyball data (Eredivisie, Topdivisie, Superdivisie, and the full Dutch pyramid) via the Nevobo API.

machina-sports/sports-skills

Call topologically associating domains (TADs) from Hi-C data using insulation score, HiCExplorer, and other methods.

FreedomIntelligence/OpenClaw-Medical-Skills

Predict peptide-MHC class I and II binding affinity using MHCflurry and NetMHCpan neural network models.

FreedomIntelligence/OpenClaw-Medical-Skills

Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn).

FreedomIntelligence/OpenClaw-Medical-Skills

MS-DIAL-based metabolomics preprocessing as alternative to XCMS.

FreedomIntelligence/OpenClaw-Medical-Skills

Targeted metabolomics analysis using MRM/SRM with standard curves.

FreedomIntelligence/OpenClaw-Medical-Skills

Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs.

FreedomIntelligence/OpenClaw-Medical-Skills

CLI-first web scraping & content extraction with optional MCP server.

foryourhealth111-pixel/Vibe-Skills

Create, configure, and maintain custom agent profiles and author new skills via the repl tool.

JimLiu/science-skills

在不执行的前提下，依据显式沙箱策略审查 skill 请求的文件系统、命令、网络、secret 或破坏性操作. An agent skill from fancyboi999/ai-engineering-from-scratch-zh.

fancyboi999/ai-engineering-from-scratch-zh

Develop Lakeflow Spark Declarative Pipelines (formerly Delta Live Tables) on Databricks.

databricks/databricks-agent-skills

Web data extraction and discovery using the Bright Data Python SDK.

brightdata/skills

Python data pipelines with modular architecture. An agent skill from jamditis/claude-skills-journalism.

jamditis/claude-skills-journalism

Eval-driven skill tuning. An agent skill from ClawBio/ClawBio.

ClawBio/ClawBio

Finds and ranks callers that could move from services/llm-gateway to PostHog/ai-gateway.

PostHog/posthog

Stateful Jupyter kernel — variables persist across cells (hamelnb)

taracodlabs/aiden

当（when）变更新增或修改 migrations/ 下的路径时，审查 database migration 文件。合并前使用此 migration Skill 收集正向、回滚、锁定和数据安全证据。

fancyboi999/ai-engineering-from-scratch-zh

Builds Airflow 3.1+ plugins that embed FastAPI apps, custom UI pages, React components, middleware, macros, and operator links directly into the Airflow UI.

astronomer/agents

Define reusable Airflow task group templates with Pydantic validation and compose DAGs from YAML.

astronomer/agents

Generates a Meta-analysis results section description for funnel plots, including statistical tables (Egger's, Begg's, Trim & Fill) and figure legends.

aipoch/medical-research-skills

Differential gene expression analysis for bulk RNA-seq count matrices using a DESeq2-like workflow in Python; use when you need Wald tests, FDR correction, and optional LFC shrinkage for…

aipoch/medical-research-skills

Comprehensive tool for computational mass spectrometry using PyOpenMS; use when you need to read/write MS formats (mzML/mzXML/MGF), run signal processing (smoothing/peak picking), detect isotope…

aipoch/medical-research-skills