By davila7

Runs web-grounded searches through Perplexity's Sonar models over OpenRouter for current events, recent literature and cited facts beyond the model's training cutoff.

davila7/claude-code-templates

Analyzes Neuropixels recordings from SpikeGLX or Open Ephys through preprocessing, drift correction, Kilosort4 spike sorting, quality metrics and curation.

davila7/claude-code-templates

Supplies LaTeX templates and formatting rules for journals, conferences, posters, and grant proposals, then can check a draft against them.

davila7/claude-code-templates

Analyzes a brand's existing writing to lock in a consistent voice, then builds SEO blog posts and platform-specific social content around it.

davila7/claude-code-templates

Guides corrective and preventive action (CAPA) work in a quality management system, from initiation and root cause analysis through effectiveness verification.

davila7/claude-code-templates

Senior FDA consultant and specialist for medical device companies including HIPAA compliance and requirement management.

davila7/claude-code-templates

Queries the UniProt REST API directly to search proteins, fetch FASTA sequences, map IDs between databases and read Swiss-Prot and TrEMBL entries.

davila7/claude-code-templates

Walks through single-cell RNA-seq analysis with Scanpy: loading .h5ad and 10X data, QC, normalization, PCA and UMAP, Leiden clustering, marker genes and cell type annotation.

davila7/claude-code-templates

Senior GDPR/DSGVO expert and internal/external auditor for data protection compliance.

davila7/claude-code-templates

Reads, edits, anonymizes and converts DICOM medical imaging files with pydicom, including pixel data extraction and compressed transfer syntaxes.

davila7/claude-code-templates

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).

davila7/claude-code-templates

Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data.

davila7/claude-code-templates

Searches PubMed directly through its E-utilities REST API, with guidance on Boolean and MeSH query syntax, batch retrieval and citation data.

davila7/claude-code-templates

Guides molecular work with RDKit in Python: reading SMILES and SDF, sanitization, descriptors, fingerprints, substructure and similarity search, reactions and coordinates.

davila7/claude-code-templates

Guides use of deepTools on sequencing data: BAM to bigWig conversion, QC, sample correlation, and heatmaps or profiles around TSS and peaks for ChIP-seq, RNA-seq and ATAC-seq.

davila7/claude-code-templates

Direct REST API access to KEGG (academic use only). An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Guides time series machine learning with the aeon toolkit: classification, regression, clustering, forecasting, anomaly detection, segmentation and similarity search.

davila7/claude-code-templates

Builds, fits, checks and compares Bayesian models in PyMC, from priors and NUTS sampling to variational inference, LOO and WAIC comparison, and diagnostics.

davila7/claude-code-templates

Senior Information Security Manager specializing in ISO 27001 and ISO 27002 implementation for HealthTech and MedTech companies.

davila7/claude-code-templates

Query ClinicalTrials.gov via API v2. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Manages biological datasets with LaminDB: versioned artifacts, run lineage, ontology-based annotation, schema validation and links to workflow managers and ML tools.

davila7/claude-code-templates

This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference…

davila7/claude-code-templates

Processes tabular datasets too large for RAM with Vaex: lazy DataFrames, fast aggregations, big-data plots and ML pipelines over CSV, HDF5, Arrow and Parquet.

davila7/claude-code-templates

This skill should be used when working with reinforcement learning tasks including high-performance RL training, custom environment development, vectorized parallel simulation, multi-agent systems…

davila7/claude-code-templates

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis.

davila7/claude-code-templates

A skill your agent uses for reinforcement learning tasks including training RL agents (PPO, SAC, DQN, TD3, DDPG, A2C, etc.), creating custom Gym environments, implementing callbacks for monitoring…

davila7/claude-code-templates

Detects CPU, GPU, memory and disk resources before heavy scientific tasks and writes a JSON file with advice on parallelism, out-of-core work and GPU use.

davila7/claude-code-templates

Diffusion-based molecular docking. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Runs differential gene expression analysis on bulk RNA-seq counts with PyDESeq2: design formulas, Wald tests, FDR correction and volcano or MA plots.

davila7/claude-code-templates

Query ChEMBL's bioactive molecules and drug discovery data. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Quantum computing framework for building, simulating, optimizing, and executing quantum circuits.

davila7/claude-code-templates

Guides your agent through building, editing, comparing and drawing phylogenetic trees with the ETE Python toolkit, including orthology calls and NCBI taxonomy lookups.

davila7/claude-code-templates

Queries the openFDA API from Python for drug, device, food and veterinary data: adverse events, recalls, labels, approvals, NDC and UNII lookups.

davila7/claude-code-templates

Works with genomic intervals using gtars, a Rust toolkit with Python bindings: overlap detection, coverage tracks, tokenization for ML models and reference sequences.

davila7/claude-code-templates

Processes digital pathology whole slide images with histolab: tissue detection, mask creation, tile extraction and dataset preparation for deep learning.

davila7/claude-code-templates

Screens compound libraries in Python with the medchem library: drug-likeness rules, PAINS filters, structural alerts and complexity metrics for prioritizing molecules.

davila7/claude-code-templates

Processes physiological signals with NeuroKit2 in Python: ECG, PPG, EEG, EDA, respiration, EMG and EOG, including HRV, events and complexity measures.

davila7/claude-code-templates

Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data.

davila7/claude-code-templates

Builds machine learning pipelines on clinical data with PyHealth: EHR datasets, prediction tasks, medical code mapping, healthcare models and evaluation.

davila7/claude-code-templates

Python interface to OpenMS for mass spectrometry data analysis.

davila7/claude-code-templates

Organizes PyTorch training code into LightningModules, DataModules and Trainers, with multi-GPU strategies, callbacks and logging configured.

davila7/claude-code-templates

Fits and evaluates survival models with scikit-survival: Cox models, Random Survival Forests, boosting, survival SVMs, concordance index, Brier score and competing risks.

davila7/claude-code-templates

Explains machine learning predictions with SHAP: picking the right explainer, computing Shapley values and drawing waterfall, beeswarm, bar and force plots.

davila7/claude-code-templates

Loads pre-trained Hugging Face Transformers models for text, vision and audio tasks, runs inference with pipelines and fine-tunes on custom datasets.

davila7/claude-code-templates

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling…

davila7/claude-code-templates

This skill should be used when working with genomic interval data (BED files) for machine learning tasks.

davila7/claude-code-templates

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities.

davila7/claude-code-templates