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By NVIDIA-BioNeMo
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Run a complete protein binder design campaign with NVIDIA Proteina-Complexa: resolve a target structure and hotspots from a name/sequence/PDB, co-design binder sequence+structure with reward-guided… | NVIDIA-BioNeMo/ | 478 | — | ~3.1k | Automated safety check: Notes | Apache-2.0 | yesterday |
| 2 | Route NVIDIA Parabricks pbrun tools, assess GPU/runtime readiness, and provide version-aware command guidance for FASTQ/BAM processing, RNA-seq, variant calling, BAM QC, and GVCF workflows. | NVIDIA-BioNeMo/ | 478 | — | ~2.1k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 3 | Orchestrate an end-to-end de novo protein binder design campaign against a protein target by composing BioNeMo NIM skills. | NVIDIA-BioNeMo/ | 478 | — | ~1.4k | Automated safety check: Notes | Apache-2.0 | yesterday |
| 4 | Build and debug cuEquivariance irreps, custom Irrep subclasses, Clebsch-Gordan tensor products, and equivariant or segmented polynomials. | NVIDIA-BioNeMo/ | 478 | — | ~1.9k | Automated safety check: Pass | Unknown | yesterday |
| 5 | A skill your agent uses when accelerating existing genomics workflows with NVIDIA Parabricks, improving runtime or price/performance, converting pipeline steps to GPUs, or comparing CPU and GPU… | NVIDIA-BioNeMo/ | 478 | — | ~3.3k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 6 | End-to-end Proteina-Complexa design pipeline driver. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. | NVIDIA-BioNeMo/ | 478 | — | ~4.1k | Automated safety check: Notes | Unknown | yesterday |
| 7 | Standalone evaluation of an existing PDB directory with Proteina-Complexa. | NVIDIA-BioNeMo/ | 478 | — | ~3.3k | Automated safety check: Notes | Unknown | yesterday |
| 8 | A skill your agent uses whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over… | NVIDIA-BioNeMo/ | 478 | — | ~3.2k | Automated safety check: Notes | Unknown | yesterday |
| 9 | A skill your agent uses whenever the user wants to add, register, edit, list, show, or validate a Proteina-Complexa design target for any pipeline — protein binder (default), ligand binder, or AME /… | NVIDIA-BioNeMo/ | 478 | — | ~3.7k | Automated safety check: Notes | Unknown | yesterday |
| 10 | Write code that calls the installed nvMolKit Python API for GPU-accelerated, batched RDKit-style operations - Morgan fingerprints, Tanimoto/cosine similarity, ETKDG conformer embedding, MMFF/UFF… | NVIDIA-BioNeMo/ | 478 | — | ~4.4k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 11 | First-time setup, environment configuration, and model-weight installation for Proteina-Complexa. | NVIDIA-BioNeMo/ | 478 | — | ~3.5k | Automated safety check: Notes | Unknown | yesterday |
| 12 | Continue pretraining from an existing KERMT checkpoint. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. | NVIDIA-BioNeMo/ | 478 | — | ~3.8k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 13 | 13.Kermt Embed Extract per-molecule embeddings from any encoder-bearing KERMT checkpoint (groverbase / cmim / hybrid / finetuned). | NVIDIA-BioNeMo/ | 478 | — | ~1.7k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 14 | Finetune a pretrained KERMT encoder on a labeled CSV. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. | NVIDIA-BioNeMo/ | 478 | — | ~3.9k | Automated safety check: Pass | Apache-2.0 | yesterday |
