Parameters
thedaviddias/Front-End-Checklist
A skill your agent uses when auditing URL structure or configuring search engine handling of filtered, sorted, or tracked URLs.
A skill your agent uses whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over…
Custom licenceAuto-check: notes
Install Complexa Sweep
$ npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install NVIDIA-BioNeMo/bionemo-agent-toolkit complexa-sweep --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bionemo-agent-toolkit/skills/complexa-sweep .claude/skills/complexa-sweep && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "complexa-sweep" agent skill from https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/skills/bionemo-agent-toolkit/skills/complexa-sweep into .claude/skills/complexa-sweep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "complexa-sweep", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/skills/bionemo-agent-toolkit/skills/complexa-sweepType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install NVIDIA-BioNeMo/bionemo-agent-toolkit complexa-sweep --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bionemo-agent-toolkit/skills/complexa-sweep .agents/skills/complexa-sweep && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "complexa-sweep" agent skill from https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/skills/bionemo-agent-toolkit/skills/complexa-sweep into .agents/skills/complexa-sweep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "complexa-sweep", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install NVIDIA-BioNeMo/bionemo-agent-toolkit complexa-sweep --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bionemo-agent-toolkit/skills/complexa-sweep .cursor/skills/complexa-sweep && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "complexa-sweep" agent skill from https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/skills/bionemo-agent-toolkit/skills/complexa-sweep into .cursor/skills/complexa-sweep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "complexa-sweep", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit.git --path skills/bionemo-agent-toolkit/skills/complexa-sweep--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install NVIDIA-BioNeMo/bionemo-agent-toolkit complexa-sweep --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bionemo-agent-toolkit/skills/complexa-sweep .gemini/skills/complexa-sweep && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "complexa-sweep" agent skill from https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/skills/bionemo-agent-toolkit/skills/complexa-sweep into .gemini/skills/complexa-sweep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "complexa-sweep", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install NVIDIA-BioNeMo/bionemo-agent-toolkit complexa-sweepInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bionemo-agent-toolkit/skills/complexa-sweep .github/skills/complexa-sweep && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "complexa-sweep" agent skill from https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/skills/bionemo-agent-toolkit/skills/complexa-sweep into .github/skills/complexa-sweep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "complexa-sweep", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install NVIDIA-BioNeMo/bionemo-agent-toolkit complexa-sweep --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bionemo-agent-toolkit/skills/complexa-sweep .opencode/skills/complexa-sweep && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "complexa-sweep" agent skill from https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit/tree/main/skills/bionemo-agent-toolkit/skills/complexa-sweep into .opencode/skills/complexa-sweep/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "complexa-sweep", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
complexa-sweep- GitHub stars
- 478
- Token cost
- ~3.2k tokens
- SKILL.md length
- 1,186 words
- Files
- 4
- Skills in repo
- 14
- Repo updated
- First seen
- Licence
- Custom licence
At a glance
A skill your agent uses whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over…
- Works in 7 steps: Pre-flight → Pick the pipeline + target → Pick or author the sweeper YAML → …
- The user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans
- SKILL.md covers What this skill enables, Step 1: Pre-flight, Step 2: Pick the pipeline +… and Step 3: Pick or author the…, plus 7 more sections
- Calls python, bash and python3
What it does
Complexa Sweep is an agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. Use this skill whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over generation/reward/evaluation knobs, or any "compare configurations" workflow. Trigger phrases include "sweep beam width", "sweep nsteps", "hyperparameter sweep", "parameter scan", "scan beamwidth and temperature", "compare configurations", "find the best generation params", "what's the optimal nsteps", "Pareto search for binder quality vs…
Its SKILL.md is about 3.2k tokens, which your agent loads only when the skill is triggered. The skill folder holds 5 other files (for example `evals/evals.json`, `reference/SWEEP.md` and `reference/sweep_axes.md`).
The repository describes itself as: Turn any agent into a life science expert with NVIDIA BioNeMo skills.
When your agent uses it
- The user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans
- Pareto search over generation/reward/evaluation knobs
- Any compare configurations workflow
- Phrases include sweep beam width
Example prompts
- “compare configurations”
- “sweep beam width”
- “sweep nsteps”
- “/complexa-sweep”
Requirements
- Python 3
- Pre-approved tools (allowed-tools): Bash, Read, Write, AskUserQuestion
Workflow steps
7 steps, taken from the step headings in SKILL.md.
- Pre-flight
- Pick the pipeline + target
- Pick or author the sweeper YAML
- Generate configs + loop complexa design
- Collect results
- Rank configs
- Emit manifest
What it can do on your machine
Read from SKILL.md and the folder at commit 2113472. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves these tools, so the agent can use them without asking each time:
BashReadWriteAskUserQuestion
From allowed-tools in the SKILL.md frontmatter.
Runs code
Shell commands in SKILL.md call:
pythonbashpython3
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Complexa Sweep loads about 3.2k tokens when it runs. Until then it costs about 193 tokens; SKILL.md has 1,186 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check: notes
The automated check noted patterns worth knowing about, such as sudo or a known installer.
- NotePre-approves every shell command (allowed-tools: Bash)SKILL.md
allowed-tools: Bash, Read, Write, AskUserQuestion
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Its licence (Custom licence) doesn't allow us to republish the file, so here is its outline and opening line. It has 1,186 words (~3,152 tokens).
“Run cartesian-product parameter sweeps over Proteina-Complexa design pipelines. Pick or author a sweeper YAML in configs/sweeps/, expand it to N inference configs with script_utils/generate_inference_configs.py, loop complexa design over those configs, then aggregate per-config success metrics into a ranked summary CSV…”
- name
- complexa-sweep
- allowed-tools
- Bash, Read, Write, AskUserQuestion
Files
SKILL.md and 3 other files in skills/bionemo-agent-toolkit/skills/complexa-sweep of NVIDIA-BioNeMo/bionemo-agent-toolkit.
- SKILL.md
- evals/evals.json
- reference/SWEEP.md
- reference/sweep_axes.md
Open the folder on GitHubat commit 2113472
Compare with similar skills
Complexa Sweep next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Complexa Sweep this skillNVIDIA-BioNeMo/bionemo-agent-toolkit | 478 | — | ~3.2k | Automated safety check: Notes | Custom licence | |
| Parametersthedaviddias/Front-End-Checklist | 74k | — | ~638 | Automated safety check: Pass | MIT | |
| Brooks Sweepsickn33/agentic-awesome-skills | 47k | 1 repos | ~668 | Automated safety check: Pass | MIT | |
| Feedback SweepEveryInc/compound-engineering-plugin | 25k | — | ~1.7k | Automated safety check: Notes | MIT | |
| Java Refactoring Remove Parametergithub/awesome-copilot | 40k | 1 repos | ~738 | Automated safety check: Pass | MIT | |
| CI Red Sweepdiegosouzapw/OmniRoute | 74k | — | ~868 | Automated safety check: Pass | MIT |
Similar skills
Brooks Sweep
sickn33/agentic-awesome-skills
Full-sweep mode: runs a unified analysis across all quality dimensions — code decay, architecture, tech debt, and test quality — then applies fixes directly to the codebase.
Feedback Sweep
EveryInc/compound-engineering-plugin
Sweeps Slack and GitHub Issues for new feedback, verifies claimed fixes actually merged, and rolls open items into a plan.
- Official
Java Refactoring Remove Parameter
github/awesome-copilot
Refactoring using Remove Parameter in Java Language. An agent skill from github/awesome-copilot.
CI Red Sweep
diegosouzapw/OmniRoute
Repairs confirmed CI failures on the base branch first, then prepares each affected PR one at a time with exact-commit evidence, never merging or weakening tests.
Review Sweep
udecode/plate
Mine review comments for broader diff-wide fixes instead of handling each line in isolation
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Complexa Design
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Questions about Complexa Sweep
What does Complexa Sweep do?
A skill your agent uses whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over…. Complexa Sweep is an agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit. Use this skill whenever the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans, Pareto search over generation/reward/evaluation knobs, or any "compare configurations" workflow.
When should I use Complexa Sweep?
Complexa Sweep fits situations like: the user wants to run a parameter sweep over a Proteina-Complexa design pipeline — cartesian-product hyperparameter scans; pareto search over generation/reward/evaluation knobs; any compare configurations workflow; phrases include sweep beam width.
How do I install Complexa Sweep in Claude Code?
Run `npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a claude-code`. Or copy the skill folder (skills/bionemo-agent-toolkit/skills/complexa-sweep in NVIDIA-BioNeMo/bionemo-agent-toolkit) into .claude/skills/complexa-sweep in your project. Claude Code loads it when a task matches its description.
How do I install Complexa Sweep in Codex?
Run `npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a codex`. Or copy the skill folder (skills/bionemo-agent-toolkit/skills/complexa-sweep in NVIDIA-BioNeMo/bionemo-agent-toolkit) into .agents/skills/complexa-sweep in your project. Codex loads it when a task matches its description.
Can I use Complexa Sweep in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill complexa-sweep -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/complexa-sweep, .gemini/skills/complexa-sweep, .github/skills/complexa-sweep and .opencode/skills/complexa-sweep in your project.
What does Complexa Sweep need to run?
Going by SKILL.md and its folder, Complexa Sweep needs the command-line tools its instructions call (python, bash and python3). Our summary lists: Python 3. Its frontmatter pre-approves these tools: Bash, Read, Write, AskUserQuestion.
Does Complexa Sweep access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Complexa Sweep safe to install?
Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. Review the folder before installing.
What licence does Complexa Sweep use?
Complexa Sweep has a licence file (the repository's licence) that doesn't match a standard licence. Read it on GitHub before reusing the skill.
How many tokens does Complexa Sweep use?
About 3.2k tokens (SKILL.md is roughly 13k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Complexa Sweep?
Skills that share tags, products or a category with Complexa Sweep: Parameters (thedaviddias/Front-End-Checklist, 74k stars), Brooks Sweep (sickn33/agentic-awesome-skills, 47k stars), Feedback Sweep (EveryInc/compound-engineering-plugin, 25k stars) and Java Refactoring Remove Parameter (github/awesome-copilot, 40k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Complexa Sweep?
NVIDIA-BioNeMo (a GitHub organization) maintains it in NVIDIA-BioNeMo/bionemo-agent-toolkit, which has 478 GitHub stars. The repository holds 14 skills in this directory. The repository was last updated on October 6, 2026.
Source: NVIDIA-BioNeMo/bionemo-agent-toolkit on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.