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NCBI · By FreedomIntelligence
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. | FreedomIntelligence/ | 3.1k | 2 repos | ~2.5k | Automated safety check: Notes | No licence | 2 mo ago |
| 2 | Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 3 | Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 4 | Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 5 | Search PubMed for scientific literature. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~751 | Automated safety check: Pass | No licence | 2 mo ago |
| 6 | KEGG pathway and module enrichment analysis using clusterProfiler enrichKEGG and enrichMKEGG. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 7 | Reactome pathway enrichment using ReactomePA package. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 8 | RNA-seq specific quality control including rRNA contamination detection, strandedness verification, gene body coverage, and transcript integrity metrics. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 9 | Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. | FreedomIntelligence/ | 3.1k | — | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 10 | Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. | FreedomIntelligence/ | 3.1k | — | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
