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Research & Science · Accessibility
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Detect allele-specific chromatin accessibility from ATAC-seq using WASP, GATK ASEReadCounter, or RASQUAL. | GPTomics/ | 1.2k | 2 repos | ~4.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | Assign negation, temporality, and uncertainty (the ConText axes) to clinical entities extracted by OpenMed, so "denies chest pain" is not counted as chest pain and "history of MI" is not counted as… | maziyarpanahi/ | 5.5k | — | ~1.8k | Automated safety check: Pass | Apache-2.0 | today |
| 3 | Identify differentially accessible chromatin regions across conditions using DiffBind, csaw, DESeq2, or edgeR. | GPTomics/ | 1.2k | 2 repos | ~6k | Automated safety check: Pass | MIT | 1 mo ago |
| 4 | Analyze TF motif accessibility variability across samples or single cells using chromVAR. | GPTomics/ | 1.2k | 2 repos | ~5.2k | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Extracts cfDNA fragmentomics features (DELFI genome-wide short/long ratios, WPS nucleosome positioning, Griffin GC-corrected accessibility profiles, end-motifs/MDS, OCF) for cancer detection and… | GPTomics/ | 1.2k | 1 repo | ~4.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 6 | Evaluates genome assembly quality across the three orthogonal axes - contiguity (QUAST auN/NG50/NGx, not bare N50), completeness (BUSCO/compleasm gene-space plus Merqury k-mer completeness), and… | GPTomics/ | 1.2k | 1 repo | ~4.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 7 | Discovers shared and view-specific latent factors across bulk multi-omics blocks (RNA-seq, proteomics, methylation) on a common sample axis with MOFA2's unsupervised Bayesian group factor model… | GPTomics/ | 1.2k | 1 repo | ~4.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 8 | Orchestrates the end-to-end bulk ATAC-seq pipeline from FASTQ to differential accessibility and TF footprints, chaining Nextera-aware fastp QC, Bowtie2 alignment, chrM removal, dedup, a single Tn5… | GPTomics/ | 1.2k | 1 repo | ~4.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 9 | A skill your agent uses when the user has a scientific draft (with its dataset, figures, and optional analysis code) and wants it iteratively revised until it clears a quality bar. | gaasher/ | 174 | — | ~3.3k | Automated safety check: Pass | MIT | 3 mo ago |
| 10 | 10.Hot3d HOT3D (Hand-Object 3D Dataset) by Meta Facebook - multi-view egocentric hand and object 3D tracking for Aria/Quest smart glasses. | wu-yc/ | 1.1k | 1 repo | ~1.3k | Automated safety check: Pass | CC-BY-NC-4.0 | 6 mo ago |
| 11 | Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. | FreedomIntelligence/ | 3.1k | — | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 12 | Analyze transcription factor motif accessibility variability using chromVAR. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 13 | Predict RNA secondary structure, MFE folding, base-pair probabilities, RNA-RNA interactions via ViennaRNA Python bindings. | jaechang-hits/ | 374 | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 12 days ago |
| 14 | Predict synthetic accessibility and retrosynthetic pathways for novel molecules using the IBM RXN API. | learningmatter-mit/ | 176 | — | ~647 | Automated safety check: Pass | MIT | 3 days ago |
| 15 | Universal QA checklist for generated scientific plots: overlapping labels, clipped text, missing axes/legends, overcrowded data, and cross-journal resolution/format guidance. | jaechang-hits/ | 374 | 1 repo | ~1.8k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 16 | A skill your agent uses when responding to an Academy of Management Annals (Annals) proposal decision or full-review referee letter — framework/attitude asks, coverage gaps, balance complaints, and… | brycewang-stanford/ | 1.2k | — | ~1.5k | Automated safety check: Pass | MIT | 14 days ago |
| 17 | A skill your agent uses when responding to Editorial Committee and referee feedback on an Annual Review of Economics (ARE) review — coverage gaps, balance/accuracy complaints, framework/structure… | brycewang-stanford/ | 1.2k | — | ~1.9k | Automated safety check: Pass | MIT | 14 days ago |
| 18 | A skill your agent uses when responding to Editorial Committee and referee feedback on an Annual Review of Sociology (ARSoc) review — coverage gaps, balance/accuracy complaints, framework/structure… | brycewang-stanford/ | 1.2k | — | ~2.1k | Automated safety check: Pass | MIT | 14 days ago |
| 19 | 19.Jel Revision A skill your agent uses when responding to editor and referee feedback on a Journal of Economic Literature (JEL) survey — coverage gaps, balance complaints, framework/structure asks, and… | brycewang-stanford/ | 1.2k | — | ~1.3k | Automated safety check: Pass | MIT | 14 days ago |
| 20 | A skill your agent uses when responding to a Perspectives on Psychological Science (PoPS) editor and reviewer decision letter — coverage gaps, balance/fairness complaints, framework/argument asks… | brycewang-stanford/ | 1.2k | — | ~1.5k | Automated safety check: Pass | MIT | 14 days ago |
| 21 | Provider-independent governance workflow for verifying and correcting human- or model-generated video descriptions. | calesthio/ | 197 | — | ~3.5k | Automated safety check: Pass | MIT | 2 mo ago |
