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Research & Science · Model Context Protocol
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 145 | 145.API Errors McpError constructor, JsonRpcErrorCode reference, and error handling patterns for @cyanheads/mcp-ts-core. | cyanheads/ | 158 | — | ~16k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 146 | 146.Field Test Exercise tools, resources, and prompts against a live HTTP server via MCP JSON-RPC over curl. | cyanheads/ | 158 | — | ~11k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 147 | 147.Research Mastery Hierarchical retrieval: KB → MCP/Context7 → web. An agent skill from softspark/ai-toolkit. | softspark/ | 179 | — | ~1.8k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 148 | 148.Chem Solution Md Set up and run molecular dynamics simulations of molecules in explicit solvent boxes using Packmol for box construction and MLIPs for dynamics. | learningmatter-mit/ | 176 | — | ~1.9k | Automated safety check: Pass | MIT | 3 days ago |
| 149 | 149.Drug Ligand Prep Prepare small-molecule ligands for docking and analysis via optional state enumeration, 3D conformer generation, MMFF/UFF minimization, and export to SDF + AutoDock PDBQT. | learningmatter-mit/ | 176 | — | ~772 | Automated safety check: Pass | MIT | 3 days ago |
| 150 | Prepare macromolecular receptor structures (PDB/mmCIF or RCSB PDB ID) for docking or simulation by fixing common structure issues and adding hydrogens. | learningmatter-mit/ | 176 | — | ~1.1k | Automated safety check: Pass | MIT | 3 days ago |
| 151 | 151.Mat DB Mp Query Materials Project database for crystal structures, computed properties, elastic/magnetic data, and structurally similar materials using the MP API. | learningmatter-mit/ | 176 | — | ~3k | Automated safety check: Pass | MIT | 3 days ago |
| 152 | Calculate charged defect formation energies and transition level diagrams using pymatgen-analysis-defects and atomate2 VASP workflows. | learningmatter-mit/ | 176 | — | ~1.6k | Automated safety check: Pass | MIT | 3 days ago |
| 153 | Generate random crystal structures for a given composition (AIRSS-style) and relax with MLIPs to find low-energy candidates. | learningmatter-mit/ | 176 | — | ~1.2k | Automated safety check: Pass | MIT | 3 days ago |
| 154 | 154.Stata Show mcp-stata identity, connected tools, and status. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. | brycewang-stanford/ | 4.6k | — | ~519 | Automated safety check: Pass | Unknown | 6 days ago |
| 155 | 155.API Utils API reference for all utilities exported from @cyanheads/mcp-ts-core/utils. | cyanheads/ | 158 | — | ~9.1k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 156 | 156.API Workers Cloudflare Workers deployment using createWorkerHandler from @cyanheads/mcp-ts-core/worker. | cyanheads/ | 158 | — | ~3.9k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 157 | 157.Polish Docs Meta Finalize documentation and project metadata for a ship-ready MCP server. | cyanheads/ | 158 | — | ~5.6k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 158 | Read-only audit of MCP definition language across an existing surface — tools, resources, prompts, server instructions. | cyanheads/ | 158 | — | ~4.9k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 159 | 159.Setup Arxiv MCP Guide for setup arXiv paper search MCP server using Docker MCP | NeoLabHQ/ | 1.8k | — | ~1k | Automated safety check: Pass | GPL-3.0 | 1 mo ago |
| 160 | 160.Novelty Check Validates that a research idea is genuinely novel vs. An agent skill from GRIND-Lab-Core/night_owl_research_agent. | GRIND-Lab-Core/ | 106 | — | ~1k | Automated safety check: Pass | No licence | 5 mo ago |
| 161 | Find the papers that answer a research query in Firecrawl's research paper index — a corpus of paper abstracts whose largest share is biomedical and life-science literature (PubMed, bioRxiv… | firecrawl/ | 117 | — | ~2.4k | Automated safety check: Pass | ISC | 2 days ago |
| 162 | Patsnap Current Awareness MCP for AI agents. An agent skill from patsnap/mcp. | patsnap/ | 113 | — | ~671 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 163 | Patsnap Scientific Literature & Journals MCP for AI agents. An agent skill from patsnap/mcp. | patsnap/ | 113 | — | ~673 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 164 | Patsnap Scientific & Translational Evidence MCP for AI agents. | patsnap/ | 113 | — | ~728 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 165 | 165.Whitespark Tool When the user wants citation gap analysis, managed citation building, review generation campaigns, or local rank tracking. | garrettjsmith/ | 121 | — | ~2.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 166 | AI toolkit to parse, complete, and format academic references | wentorai/ | 298 | 1 repo | ~1.1k | Automated safety check: Pass | MIT | 3 mo ago |
| 167 | 167.Zotero MCP Guide Guide to Zotero MCP for connecting Zotero library with AI assistants | wentorai/ | 298 | 1 repo | ~2.1k | Automated safety check: Pass | MIT | 3 mo ago |
| 168 | A skill your agent uses to retrieve official biomedical or healthcare public records, choose between ClinicalTrials.gov, PubMed, FDA and CMS sources, inspect data vintage and query completeness, or… | hh-health-AI/ | 101 | — | ~696 | Automated safety check: Pass | MIT | 3 days ago |
| 169 | A skill your agent uses when retrieving ClinicalTrials.gov, PubMed, openFDA or CMS catalog and sample data, integrating public biomedical tools through MCP or checking query completeness and vintage. | hh-health-AI/ | 101 | — | ~858 | Automated safety check: Pass | MIT | 3 days ago |
| 170 | 170.Research Brief Create an automation that writes a recurring research brief. | OpenHands/ | 163 | — | ~831 | Automated safety check: Pass | MIT | yesterday |
| 171 | Compose auditable protein-design operations through the configured OpenAI4S protein-design MCP connector: target-conditioned RFdiffusion backbone generation, constrained ProteinMPNN sequence design… | PKU-YuanGroup/ | 622 | — | ~2.3k | Automated safety check: Pass | MIT | 2 days ago |
| 172 | 172.API Config Reference for core and server configuration in @cyanheads/mcp-ts-core. | cyanheads/ | 158 | — | ~6.8k | Automated safety check: Notes | Apache-2.0 | yesterday |
| 173 | 173.API Context Canonical reference for the unified Context object passed to every tool and resource handler in @cyanheads/mcp-ts-core. | cyanheads/ | 158 | — | ~17k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 174 | A skill your agent uses for OmicVerse bulk RNA-seq, enrichment/signature scoring, metabolomics, proteomics, microbiome, and statistical table workflows. | VectorSpaceLab/ | 331 | — | ~1k | Automated safety check: Pass | GPL-3.0 | 1 mo ago |
| 175 | 经济金融研究端到端完整流程。从研究想法到可投稿论文，覆盖文献综述、想法生成、新颖性验证、实证方法设计、论文大纲、正文写作、图表生成、LaTeX编译和投稿前检查。 | csmar432/ | 109 | — | ~5.1k | Automated safety check: Pass | MIT | 5 days ago |
| 176 | 176.Peer Review Loop Peer Review Ralph Loop — combines Cavekit kits with a Ralph Loop and true cross-model peer review using Codex (OpenAI). | hashgraph-online/ | 1.3k | — | ~2.3k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 177 | 177.Zotero Research A skill your agent uses when the user wants to search, browse, read, summarize, cite, annotate, or manage their Zotero library through Zotero MCP. | hashgraph-online/ | 1.3k | — | ~2.4k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 178 | Use AI4Scholar for real scholarly literature tasks through MCP or the OpenClaw plugin: paper search, Google Scholar/Semantic Scholar/PubMed/arXiv/bioRxiv/medRxiv queries, PDF download and reading… | Drchronx/ | 139 | — | ~1.4k | Automated safety check: Pass | Unknown | 4 mo ago |
| 179 | Use AMiner MCP for academic knowledge graph tasks: scholar search, author profile lookup, institution or team analysis, paper and patent discovery, academic influence checks, and research trend… | Drchronx/ | 139 | — | ~1.1k | Automated safety check: Pass | Unknown | 4 mo ago |
| 180 | Compute RDKit physicochemical descriptors and rule-based drug-likeness heuristics (Ro5, Veber, QED) from SMILES. | learningmatter-mit/ | 176 | — | ~1.1k | Automated safety check: Pass | MIT | 3 days ago |
| 181 | Compute Morgan/ECFP fingerprints, Tanimoto similarity, and optional Butina clusters/heatmaps for small-molecule comparison. | learningmatter-mit/ | 176 | — | ~1k | Automated safety check: Pass | MIT | 3 days ago |
| 182 | Perform iterative, deep, and comprehensive literature research on a specific materials/chemistry topic. | learningmatter-mit/ | 176 | — | ~1.2k | Automated safety check: Pass | MIT | 3 days ago |
| 183 | 183.Mat Md Monitors Real-time monitoring tools for stability, equilibration, and diffusion during ASE molecular dynamics simulations. | learningmatter-mit/ | 176 | — | ~1.2k | Automated safety check: Pass | MIT | 3 days ago |
| 184 | Diagnose local Stata, MCP, package, startup, graph-export, and permissions issues. | brycewang-stanford/ | 4.6k | — | ~194 | Automated safety check: Pass | Unknown | 6 days ago |
| 185 | 185.Stata Toolkit Activate when users mention Stata commands, .do files, regressions, econometrics, stored results, graphs, dataset inspection, replication, or Stata errors. | brycewang-stanford/ | 4.6k | — | ~332 | Automated safety check: Pass | Unknown | 6 days ago |
| 186 | A skill your agent uses when designing the real-data validation of a 《中国管理科学》 (Chinese Journal of Management Science) manuscript — forecasting and financial-engineering strands: data provenance… | brycewang-stanford/ | 1.2k | — | ~783 | Automated safety check: Pass | MIT | 14 days ago |
| 187 | A skill your agent uses when writing the managerial insights and countermeasure suggestions of a 《中国管理科学》 (Chinese Journal of Management Science) manuscript — turning model and experiment results… | brycewang-stanford/ | 1.2k | — | ~664 | Automated safety check: Pass | MIT | 14 days ago |
| 188 | A skill your agent uses when preparing tables, figures, formulas and pseudocode exhibits for a 《中国管理科学》 (Chinese Journal of Management Science) manuscript — three-line tables, equation-editor… | brycewang-stanford/ | 1.2k | — | ~665 | Automated safety check: Pass | MIT | 14 days ago |
| 189 | A skill your agent uses when the empirical identification strategy is the bottleneck for a 《财贸经济》 manuscript — fiscal / tax / financial / trade policy shocks and firm- / city- / bank-level… | brycewang-stanford/ | 1.2k | — | ~866 | Automated safety check: Pass | MIT | 14 days ago |
| 190 | A skill your agent uses when finalizing regression tables and figures for a 《财贸经济》 manuscript. | brycewang-stanford/ | 1.2k | — | ~852 | Automated safety check: Pass | MIT | 14 days ago |
| 191 | 191.Er Robustness A skill your agent uses when building or writing the robustness-check section of an Economic-Research manuscript — organizes checks by the identification threat each one answers, not as an… | brycewang-stanford/ | 1.2k | — | ~1k | Automated safety check: Pass | MIT | 14 days ago |
| 192 | A skill your agent uses when building the tables and figures for a Journal of Financial and Quantitative Analysis (JFQA) paper — summary statistics, main regressions, robustness, and… | brycewang-stanford/ | 1.2k | — | ~1.5k | Automated safety check: Pass | MIT | 14 days ago |
