Search
Documents & Office · Bioinformatics
Skills
Sort:BestMost starsTrending todayTrending this weekTrending this monthNewestRecently updatedName
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Load when the user needs Deterministic fixed-period 24-hour single-component cosinor OLS rhythm analysis for a bulk RNA time-course CSV. | TianGzlab/ | 161 | — | ~840 | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 2 | 2.Pathml Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. | davila7/ | 33k | 11 repos | ~1.9k | Automated safety check: Pass | MIT | today |
| 3 | Extract TCR:pMHC specificity records from raw submission sources - supplementary XLS/CSV tables, PDF manuscripts, 10x Genomics contig and clonotype files, AIRR Rearrangement TSVs, Adaptive ImmunoSEQ… | antigenomics/ | 157 | — | ~1.5k | Automated safety check: Pass | Unknown | yesterday |
| 4 | Xenium platform branch of the spatial transcriptomics workflow — load and validate the platform's cell-level matrix for downstream analysis. | QING1105/ | 101 | — | ~535 | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Map scRNA-seq atlases onto spatial transcriptomics slides using omicverse's Single2Spatial workflow for deep-forest training, spot-level assessment, and marker visualisation. | FreedomIntelligence/ | 3.1k | 2 repos | ~994 | Automated safety check: Pass | No licence | 2 mo ago |
| 6 | Analyze high-resolution spatial platforms like Slide-seq, Stereo-seq, and Visium HD. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 7 | Query metadata and download data from the NCBI Gene Expression Omnibus (GEO). | ClawBio/ | 1.2k | — | ~4.7k | Automated safety check: Pass | MIT | 2 days ago |
| 8 | Generates submission-ready Elsevier/SCI Highlights from manuscript text or extracted PDF/DOCX/TXT content. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 9 | A skill your agent uses when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 24 days ago |
| 10 | Auto-annotate plasmids with features (promoters, terminators, resistance, origins, tags, fluorescent proteins) via BLAST against curated DBs (Addgene, fpbase, SnapGene). | jaechang-hits/ | 374 | 1 repo | ~4.7k | Automated safety check: Pass | GPL-3.0 | 12 days ago |
| 11 | Bioinformatics literature analysis workflow extraction and customized plan design. | aipoch/ | 1.9k | — | ~2.6k | Automated safety check: Pass | MIT | 24 days ago |
| 12 | Load when ingesting a MaxQuant proteinGroups.txt, FragPipe combinedprotein.tsv, DIA-NN report, or generic CSV / TSV protein-quantification table — normalises columns to a standard schema, emits… | TianGzlab/ | 161 | — | ~1.1k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 13 | Load when attaching cell-barcode → sgRNA assignments from a mapping TSV/CSV onto a Perturb-seq expression AnnData, producing standardised perturbation / sgRNA / target-gene obs columns. | TianGzlab/ | 161 | — | ~1.2k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 14 | SpotClean is a computational method to adjust for spot swapping in spatial transcriptomics data. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
