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Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | A skill your agent uses when a researcher needs to query biomedical databases for biomarker discovery, build target profiles from UniProt/Open Targets/STRING, rank biomarker candidates by evidence… | aws-samples/ | 274 | — | ~1.1k | Automated safety check: Pass | MIT-0 | 9 days ago |
| 2 | Queries JGI Lakehouse (Dremio) for genomics metadata from GOLD, IMG, Mycocosm, Phytozome. | BioTender-max/ | 200 | — | ~3.7k | Automated safety check: Pass | Unknown | 3 mo ago |
| 3 | Analyzes CUT&RUN (Skene Henikoff 2017) and CUT&Tag (Kaya-Okur 2019) chromatin profiling data. | GPTomics/ | 1.2k | 2 repos | ~4k | Automated safety check: Pass | MIT | 1 mo ago |
| 4 | Identifies differentially bound ChIP-seq regions between conditions using DiffBind, csaw (sliding windows), DESeq2/edgeR/PyDESeq2 on count matrices, NormR (control-aware), or MAnorm2. | GPTomics/ | 1.2k | 2 repos | ~5.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Normalizes ChIP-seq data using exogenous spike-in (ChIP-Rx with Drosophila chromatin per Orlando 2014 / Egan 2016; E. | GPTomics/ | 1.2k | 2 repos | ~4.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 6 | Query and download from NCBI Gene Expression Omnibus (GEO) and EMBL-EBI's BioStudies/ArrayExpress mirror. | GPTomics/ | 1.2k | 2 repos | ~4.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 7 | Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux. | wu-yc/ | 1.1k | 2 repos | ~5.9k | Automated safety check: Pass | No licence | 6 mo ago |
| 8 | Quality control, filtering, normalization, and feature selection for spatial transcriptomics data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 9 | A skill your agent uses when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory… | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 10 | Turns raw Illumina Infinium methylation BeadChip IDATs (450K, EPIC, EPICv2) into a defensible beta/M matrix with sesame (openSesame/SigDF) or minfi (RGChannelSet - MethylSet - GenomicRatioSet). | GPTomics/ | 1.2k | 1 repo | ~4.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 11 | Orchestrates the end-to-end bisulfite/EM-seq methylation pipeline from FASTQ to differentially methylated regions, chaining Trim Galore/fastp QC, Bismark alignment + deduplication, methylation… | GPTomics/ | 1.2k | 1 repo | ~3.7k | Automated safety check: Pass | MIT | 1 mo ago |
| 12 | Normalizes and transforms RNA-seq count matrices for DE, visualization, clustering, and ML. | GPTomics/ | 1.2k | 1 repo | ~6.2k | Automated safety check: Pass | MIT | 1 mo ago |
| 13 | Harmonizes already-normalized per-omic matrices onto a common footing before joint integration - assembling a MultiAssayExperiment, choosing the per-omic variance-stabilizing transform, deciding… | GPTomics/ | 1.2k | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 14 | Joint genotype a cohort of per-sample gVCFs with GATK (HaplotypeCaller -ERC GVCF - GenomicsDBImport or CombineGVCFs - GenotypeGVCFs) or GLnexus for DeepVariant gVCFs, producing a squared-off… | GPTomics/ | 1.2k | 1 repo | ~6.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 15 | Batch effect correction for CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 16 | Selects, investigates, and compares AWS object, file, and block storage services, and answers cost, performance, configuration, security, and troubleshooting questions about storage services. | aws/ | 2.8k | — | ~5.8k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 17 | Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 18 | Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. | bioMate-AI/ | 804 | — | ~1k | Automated safety check: Pass | Unknown | 3 mo ago |
