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Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | 3Dmol.js WebGL molecular visualization emitted as self-contained HTML. | jaechang-hits/ | 374 | — | ~3.2k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 2 | Model interpretability via SHAP (Shapley values from game theory). | jaechang-hits/ | 374 | 1 repo | ~3.7k | Automated safety check: Pass | MIT | 12 days ago |
| 3 | Methodology for exploratory data analysis on scientific files. | jaechang-hits/ | 374 | — | ~3.1k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 4 | Consensus cell type annotation: runs 10+ algorithms (KNN-Harmony/BBKNN/Scanorama/scVI, CellTypist, ONCLASS, Random Forest, SCANVI, SVM, XGBoost) on a labeled reference and transfers labels via… | jaechang-hits/ | 374 | 2 repos | ~6.9k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 5 | Geospatial vector analysis extending pandas. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~3.8k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 6 | Bulk RNA-seq DE with PyDESeq2: load counts, normalize, fit negative binomial models, Wald test (BH-FDR), LFC shrinkage, volcano/MA plots. | jaechang-hits/ | 374 | 1 repo | ~3.8k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 7 | Guide for annotating statistical significance (p-value asterisks) on comparison plots. | jaechang-hits/ | 374 | 1 repo | ~3k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 8 | Guided statistical analysis: test choice, assumption checks, effect sizes, power, APA reporting. | jaechang-hits/ | 374 | 1 repo | ~4.8k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 9 | GRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). | jaechang-hits/ | 374 | 2 repos | ~5.3k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 10 | Interactive scientific visualization with Plotly. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~8.2k | Automated safety check: Pass | MIT | 12 days ago |
| 11 | Python library for single-particle tracking (SPT) in video microscopy via the Crocker-Grier algorithm. | jaechang-hits/ | 374 | 1 repo | ~6.6k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 12 | Filter degenerate, uninformative inputs before statistical tests: single-sequence alignments, empty files, constant features, zero-variance inputs, all-NaN columns. | jaechang-hits/ | 374 | 1 repo | ~3.7k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 13 | Parse/write FCS (Flow Cytometry) files v2.0-3.1. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~3k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 14 | Low-level Python plotting for scientific figures: publication-quality line, scatter, bar, heatmap, contour, 3D; multi-panel layouts; fine control of every element. | jaechang-hits/ | 374 | 1 repo | ~4k | Automated safety check: Pass | Unknown | 12 days ago |
| 15 | Per-feature NaN-safe Spearman/Pearson correlation across many features (genes, proteins, variants) with missing values. | jaechang-hits/ | 374 | 1 repo | ~2.9k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 16 | Graph and network analysis toolkit. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.8k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 17 | Interactive visualization with Plotly. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~4.5k | Automated safety check: Pass | MIT | 12 days ago |
| 18 | Bayesian modeling with PyMC 5: priors, likelihood, NUTS/ADVI sampling, diagnostics (R-hat, ESS), LOO/WAIC comparison, prediction. | jaechang-hits/ | 374 | 1 repo | ~5.7k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 19 | Python image processing for microscopy and bioimage analysis. | jaechang-hits/ | 374 | 1 repo | ~4.4k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 20 | Classical ML in Python: classification, regression, clustering, dim reduction, evaluation, tuning, preprocessing pipelines. | jaechang-hits/ | 374 | 1 repo | ~4k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 21 | Time-to-event modeling with scikit-survival: Cox PH (elastic net), Random Survival Forests, Boosting, SVMs for censored data. | jaechang-hits/ | 374 | 1 repo | ~6.9k | Automated safety check: Pass | GPL-3.0 | 12 days ago |
| 22 | Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests. | jaechang-hits/ | 374 | 1 repo | ~4.2k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 23 | Three-tiered approach to omics data analysis (transcriptomics, proteomics) covering validated pipelines, standard workflows, and custom methods | jaechang-hits/ | 374 | 1 repo | ~7.1k | Automated safety check: Pass | Unknown | 12 days ago |
| 24 | Python bridge to ImageJ2/Fiji for macros, plugins (Bio-Formats, TrackMate, Analyze Particles), NumPy↔ImagePlus/ImgLib2 exchange, and ImageJ Ops. | jaechang-hits/ | 374 | 1 repo | ~6.2k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 25 | Annotate and filter VCF variants with SnpEff and SnpSift. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 12 days ago |
| 26 | Fast in-memory DataFrame with lazy evaluation, parallel execution, Arrow backend. | jaechang-hits/ | 374 | — | ~6.4k | Automated safety check: Pass | MIT | 12 days ago |
| 27 | Designing scientific schematics, diagrams, and graphical abstracts. | jaechang-hits/ | 374 | — | ~3.8k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 28 | Out-of-core DataFrame for billion-row data via lazy evaluation and memory-mapped files. | jaechang-hits/ | 374 | — | ~6.2k | Automated safety check: Pass | MIT | 12 days ago |
| 29 | Parallel/distributed computing for larger-than-RAM data. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | — | ~4.1k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 30 | 30.Umap Learn UMAP dimensionality reduction for visualization, clustering prep, and feature engineering. | jaechang-hits/ | 374 | — | ~4.7k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
