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Data & Analytics · pysam · For data scientists
4 skills found.
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Generate alignment statistics using samtools flagstat, stats, depth, coverage, and mosdepth. | GPTomics/ | 1.2k | 2 repos | ~3.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | Process many sequence files in batch (count, merge, split, convert, summarize) with memory-safe streaming and on-disk indexing using Biopython, pysam, or pyfastx. | GPTomics/ | 1.2k | 1 repo | ~3k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irreproducibility Discovery Rate) for replicate… | FreedomIntelligence/ | 3.1k | — | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 4 | Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
