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Data & Analytics · By davila7

44 skills found.
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1
1.Neuropixels Data Analysis

Analyzes Neuropixels recordings from SpikeGLX or Open Ephys through preprocessing, drift correction, Kilosort4 spike sorting, quality metrics and curation.

davila7/claude-code-templates33k9 repos~2.8kAutomated safety check: PassMITtoday
2
2.Scanpy Single-Cell Analysis

Walks through single-cell RNA-seq analysis with Scanpy: loading .h5ad and 10X data, QC, normalization, PCA and UMAP, Leiden clustering, marker genes and cell type annotation.

davila7/claude-code-templates33k15 repos~2.8kAutomated safety check: PassMITtoday
3
3.deepTools NGS Toolkit

Guides use of deepTools on sequencing data: BAM to bigWig conversion, QC, sample correlation, and heatmaps or profiles around TSS and peaks for ChIP-seq, RNA-seq and ATAC-seq.

davila7/claude-code-templates33k12 repos~4.5kAutomated safety check: PassMITtoday
4
4.Aeon Time Series Machine Learning

Guides time series machine learning with the aeon toolkit: classification, regression, clustering, forecasting, anomaly detection, segmentation and similarity search.

davila7/claude-code-templates33k13 repos~2.6kAutomated safety check: PassMITtoday
5
5.PyMC Bayesian Modeling

Builds, fits, checks and compares Bayesian models in PyMC, from priors and NUTS sampling to variational inference, LOO and WAIC comparison, and diagnostics.

davila7/claude-code-templates33k11 repos~3.9kAutomated safety check: PassMITtoday
6
6.LaminDB Biological Data Management

Manages biological datasets with LaminDB: versioned artifacts, run lineage, ontology-based annotation, schema validation and links to workflow managers and ML tools.

davila7/claude-code-templates33k12 repos~3.6kAutomated safety check: PassMITtoday
7
7.Vaex Out-of-Core DataFrames

Processes tabular datasets too large for RAM with Vaex: lazy DataFrames, fast aggregations, big-data plots and ML pipelines over CSV, HDF5, Arrow and Parquet.

davila7/claude-code-templates33k12 repos~1.6kAutomated safety check: PassMITtoday
8
8.System Resource Detector

Detects CPU, GPU, memory and disk resources before heavy scientific tasks and writes a JSON file with advice on parallelism, out-of-core work and GPU use.

davila7/claude-code-templates33k10 repos~2.4kAutomated safety check: PassMITtoday
9
9.PyDESeq2 Differential Expression

Runs differential gene expression analysis on bulk RNA-seq counts with PyDESeq2: design formulas, Wald tests, FDR correction and volcano or MA plots.

davila7/claude-code-templates33k11 repos~4kAutomated safety check: PassMITtoday
10
10.openFDA Regulatory Data Queries

Queries the openFDA API from Python for drug, device, food and veterinary data: adverse events, recalls, labels, approvals, NDC and UNII lookups.

davila7/claude-code-templates33k11 repos~3.6kAutomated safety check: PassMITtoday
11
11.Gtars Genomic Interval Toolkit

Works with genomic intervals using gtars, a Rust toolkit with Python bindings: overlap detection, coverage tracks, tokenization for ML models and reference sequences.

davila7/claude-code-templates33k11 repos~1.9kAutomated safety check: PassMITtoday
12
12.Histolab Whole Slide Image Tiling

Processes digital pathology whole slide images with histolab: tissue detection, mask creation, tile extraction and dataset preparation for deep learning.

davila7/claude-code-templates33k11 repos~5.1kAutomated safety check: PassMITtoday
13
13.NeuroKit2 Biosignal Processing

Processes physiological signals with NeuroKit2 in Python: ECG, PPG, EEG, EDA, respiration, EMG and EOG, including HRV, events and complexity measures.

davila7/claude-code-templates33k11 repos~3kAutomated safety check: PassMITtoday
14
14.Pathml

Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data.

davila7/claude-code-templates33k11 repos~1.9kAutomated safety check: PassMITtoday
15
15.PyHealth Clinical ML Toolkit

Builds machine learning pipelines on clinical data with PyHealth: EHR datasets, prediction tasks, medical code mapping, healthcare models and evaluation.

davila7/claude-code-templates33k11 repos~4.4kAutomated safety check: PassMITtoday
16
16.Pyopenms

Python interface to OpenMS for mass spectrometry data analysis.

davila7/claude-code-templates33k11 repos~1.4kAutomated safety check: PassMITtoday
17
17.scikit-survival Time-to-Event Modeling

Fits and evaluates survival models with scikit-survival: Cox models, Random Survival Forests, boosting, survival SVMs, concordance index, Brier score and competing risks.

davila7/claude-code-templates33k11 repos~3.7kAutomated safety check: PassMITtoday
18
18.SHAP Model Explainability

Explains machine learning predictions with SHAP: picking the right explainer, computing Shapley values and drawing waterfall, beeswarm, bar and force plots.

davila7/claude-code-templates33k11 repos~4.6kAutomated safety check: PassMITtoday
19
19.Plotly

Interactive scientific and statistical data visualization library for Python.

davila7/claude-code-templates33k14 repos~1.8kAutomated safety check: PassMITtoday
20
20.Datacommons Client

Work with Data Commons, a platform providing programmatic access to public statistical data from global sources.

davila7/claude-code-templates33k10 repos~2kAutomated safety check: PassMITtoday
21
21.GeoPandas Spatial Analysis

Handles vector geospatial data in Python with GeoPandas: reading shapefiles, GeoJSON and GeoPackage, reprojecting, spatial joins, overlays, clipping and maps.

davila7/claude-code-templates33k10 repos~1.8kAutomated safety check: PassMITtoday
22
22.Deepchem

Molecular machine learning toolkit. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k10 repos~4.4kAutomated safety check: PassMITtoday
23
23.Labarchive Integration

Electronic lab notebook API integration. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k10 repos~2.3kAutomated safety check: PassMITtoday
24
24.Polars

Fast DataFrame library (Apache Arrow). An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k14 repos~2.3kAutomated safety check: PassMITtoday
25
25.Zarr Python

Chunked N-D arrays for cloud storage. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k11 repos~5kAutomated safety check: PassMITtoday
26
26.Dask

Parallel/distributed computing. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k11 repos~3.5kAutomated safety check: PassMITtoday
27
27.Omero Integration

Microscopy data management platform. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k11 repos~2kAutomated safety check: PassMITtoday
28
28.Modal

Run Python code in the cloud with serverless containers, GPUs, and autoscaling.

davila7/claude-code-templates33k7 repos~2.6kAutomated safety check: PassMITtoday
29
29.Gwas Database

Query NHGRI-EBI GWAS Catalog for SNP-trait associations. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k10 repos~5kAutomated safety check: PassMITtoday
30
30.Flowio

Parse FCS (Flow Cytometry Standard) files v2.0-3.1. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k10 repos~4.2kAutomated safety check: PassMITtoday
31
31.Molfeat

Molecular featurization for ML (100+ featurizers). An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k9 repos~3.7kAutomated safety check: PassMITtoday
32
32.Data Scientist

Expert data scientist for advanced analytics, machine learning, and statistical modeling.

davila7/claude-code-templates33k8 repos~2.6kAutomated safety check: PassMITtoday
33
33.Data Engineer

Build scalable data pipelines, modern data warehouses, and real-time streaming architectures.

davila7/claude-code-templates33k8 repos~2.8kAutomated safety check: PassMITtoday
34
34.Scala Pro

Master enterprise-grade Scala development with functional programming, distributed systems, and big data processing.

davila7/claude-code-templates33k8 repos~1.4kAutomated safety check: PassMITtoday
35
35.Firecrawl Scraper

Deep web scraping, screenshots, PDF parsing, and website crawling using Firecrawl API

davila7/claude-code-templates33k7 repos~253Automated safety check: PassMITtoday
36
36.Senior Data Engineer

World-class data engineering skill for building scalable data pipelines, ETL/ELT systems, and data infrastructure.

davila7/claude-code-templates33k1 repo~1.4kAutomated safety check: PassMITtoday
37
37.Cocoindex

Comprehensive toolkit for developing with the CocoIndex library.

davila7/claude-code-templates33k2 repos~6.4kAutomated safety check: NotesMITtoday
38
38.Segment Cdp

Expert patterns for Segment Customer Data Platform including Analytics.js, server-side tracking, tracking plans with Protocols, identity resolution, destinations configuration, and data governance…

davila7/claude-code-templates33k2 repos~354Automated safety check: PassMITtoday
39
39.Diagrammer

Render clean blueprint-style SVG diagrams from JSON specs. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates33k—~494Automated safety check: PassMITtoday
40
40.X Twitter Scraper

A skill your agent uses when the user wants to integrate with the X (Twitter) API via Xquik to search tweets, look up user profiles, extract followers, run giveaway draws, monitor accounts, or…

davila7/claude-code-templates33k—~2.3kAutomated safety check: PassMITtoday
41
41.Scrape

Scrape any webpage as clean markdown via Bright Data Web Unlocker API.

davila7/claude-code-templates33k—~392Automated safety check: PassMITtoday
42
42.Abc Xyz Segmentation

Segment a SKU portfolio on value (ABC) and demand variability (XYZ), produce the 9-box with a planning policy per cell, and reallocate planner attention accordingly.

davila7/claude-code-templates33k—~873Automated safety check: PassMITtoday
43
43.Cf Crawl

Crawl entire websites using Cloudflare Browser Rendering /crawl API.

davila7/claude-code-templates33k—~2.6kAutomated safety check: NotesMITtoday
44
44.Forecast Accuracy Review

Evaluate demand-forecast quality honestly - WMAPE, bias and Forecast Value Added against a naive benchmark over a rolling-origin backtest.

davila7/claude-code-templates33k—~884Automated safety check: PassMITtoday

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