CLI Anything Zotero
PiaoyangGuohai1/cli-anything-zotero
Full-featured CLI for Zotero reference management. An agent skill from PiaoyangGuohai1/cli-anything-zotero.
Build, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow.
$ npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install xuzhougeng/wisp-science word-zotero-citations --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/xuzhougeng/wisp-science.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/word-zotero-citations .claude/skills/word-zotero-citations && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "word-zotero-citations" agent skill from https://github.com/xuzhougeng/wisp-science/tree/main/skills/word-zotero-citations into .claude/skills/word-zotero-citations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "word-zotero-citations", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/xuzhougeng/wisp-science/tree/main/skills/word-zotero-citationsType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install xuzhougeng/wisp-science word-zotero-citations --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/wisp-science.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/word-zotero-citations .agents/skills/word-zotero-citations && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "word-zotero-citations" agent skill from https://github.com/xuzhougeng/wisp-science/tree/main/skills/word-zotero-citations into .agents/skills/word-zotero-citations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "word-zotero-citations", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install xuzhougeng/wisp-science word-zotero-citations --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/wisp-science.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/word-zotero-citations .cursor/skills/word-zotero-citations && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "word-zotero-citations" agent skill from https://github.com/xuzhougeng/wisp-science/tree/main/skills/word-zotero-citations into .cursor/skills/word-zotero-citations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "word-zotero-citations", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/xuzhougeng/wisp-science.git --path skills/word-zotero-citations--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install xuzhougeng/wisp-science word-zotero-citations --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/wisp-science.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/word-zotero-citations .gemini/skills/word-zotero-citations && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "word-zotero-citations" agent skill from https://github.com/xuzhougeng/wisp-science/tree/main/skills/word-zotero-citations into .gemini/skills/word-zotero-citations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "word-zotero-citations", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install xuzhougeng/wisp-science word-zotero-citationsInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/xuzhougeng/wisp-science.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/word-zotero-citations .github/skills/word-zotero-citations && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "word-zotero-citations" agent skill from https://github.com/xuzhougeng/wisp-science/tree/main/skills/word-zotero-citations into .github/skills/word-zotero-citations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "word-zotero-citations", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install xuzhougeng/wisp-science word-zotero-citations --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/wisp-science.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/word-zotero-citations .opencode/skills/word-zotero-citations && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "word-zotero-citations" agent skill from https://github.com/xuzhougeng/wisp-science/tree/main/skills/word-zotero-citations into .opencode/skills/word-zotero-citations/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "word-zotero-citations", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
word-zotero-citationsBuild, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow.
Word Zotero Citations is an agent skill from xuzhougeng/wisp-science. Build, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow. Use for Word–Zotero citation conversion, static OOXML citation audits, mocked/offline validation, Refresh authorization/report review, UI-evidence contracts, run recovery, or rollback proposals; never perform live Word/Zotero integration without separate explicit authorization.
Its SKILL.md is about 3.7k tokens, which your agent loads only when the skill is triggered. The skill folder holds 19 other files, including scripts, reference files and assets (for example `assets/templates/offline-run-summary.md`, `evals/task-cases.json` and `evals/trigger-cases.json`).
It sits in Research & Science, covering Citation management. It works with Zotero and Microsoft Word. The repository describes itself as: Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models. The licence is AGPL-3.0.
10 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 565deb1. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships 4 files in scripts/ (PowerShell and Python), which the agent can run.
Shell commands in SKILL.md call:
pythonFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names these keys or tokens, usually read from environment variables:
ZOTERO_API_KEYFrom names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Word Zotero Citations loads about 3.7k tokens when it runs, and up to ~12k if it reads all its reference files. Until then it costs about 117 tokens; SKILL.md has 1,915 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
The full file from xuzhougeng/wisp-science at commit 565deb1, republished under its AGPL-3.0 licence (© xuzhougeng). 1,915 words, ~3,743 tokens.
.claude/skills/word-zotero-citations/SKILL.md (or your agent's skills folder). This skill also uses 14 other files; get the full folder from GitHub.Use the generic zotero_mcp.word_citations workflow to replace citation markers in a DOCX with dynamic Zotero fields while keeping the source immutable and every mutating gate explicit, digest-bound, and auditable.
Default to offline and static work.
Do not do any of the following unless the user separately authorizes the exact live integration step:
refresh_word_zotero.ps1;ZoteroRefresh or another Zotero Word macro;http://127.0.0.1:23119;Authorization to create or edit implementation files is not authorization to run Word or Zotero. If live authorization is absent, stop at the offline gate and state exactly which live action remains unexecuted.
Use this Skill when the request involves one or more of:
PMID: 12345678 markers;Do not use this Skill for ordinary citation-style advice, manual bibliography prose, Zotero library cleanup unrelated to Word fields, or a request that only asks to install Zotero/Word.
Establish before any phase that needs them:
.docx path;.csl path;If a required path, identity, count, or authorization is missing, do not infer it. Continue only with phases that can be proven from available artifacts.
Locate the repository rather than assuming a machine-specific path. Confirm that it provides:
zotero_mcp.word_citations;zotero-word-citations or module CLI;Read references/implementation-map.md when modifying code or locating phase ownership. Read references/contracts.md when assembling, loading, or verifying persisted JSON artifacts. Read references/live-run-recipe.md when reproducing a live run end to end, and references/zotero-mcp-configuration.md when the Zotero MCP connector is in local-only mode or write tools fail.
Run the read-only preflight before scanning or creating a run. Treat its status as a gate:
blocked: stop and report failed checks;manual_review: explain the unresolved condition and do not advance automatically;Preflight must not create run directories, copy the source, connect to Word, or write to Zotero.
Use OOXML/ZIP parsing, not Word automation. Preserve source size and SHA-256 and verify the expected digest when one is supplied.
Recognize only supported explicit identifiers. Ordinary numbers are never PMIDs. Inspect all relevant Word stories, surface malformed fields, revisions, static references, and unsupported placements, then infer clusters deterministically. Any ambiguous boundary or unsupported story is a manual-review condition, not permission to guess.
Resolve identifiers against a read gateway first. Fail closed on missing or ambiguous matches. If new items would be required, create a staging plan and exact authorization; do not execute it under the default offline boundary.
Keep collection identity, library identity, requested identifiers, planned item keys, and occurrence counts stable. Use mocks or synthetic gateways for validation.
Never edit the source in place. Create or verify the isolated run layout, copy to a candidate path, and protect source/candidate digests across every transformation.
Construct valid complex ADDIN ZOTERO_ITEM CSL_CITATION fields and one dynamic ADDIN ZOTERO_BIBL field with required document preferences and OPC relationships. Preserve repeated occurrences and do not import case-specific scripts from historical projects.
Assemble the manifest only from accepted upstream scan, cluster, item visibility/staging, and candidate facts. Freeze it write-once using canonical JSON plus SHA-256.
Run the static DOCX audit and compare its observation with manifest acceptance counts. A failed audit blocks authorization. Existing bytes may be accepted only when identical; conflicting bytes or digest drift must fail closed.
Bind authorization to the exact manifest file/content digests, static audit, protected source, candidate, destination, report, diagnostic path, attempt id, and acceptance counts. Re-verify all paths and digests immediately before any live operation.
The optional Zotero Local API check is read-only and restricted to IPv4 loopback port 23119. Reject other hosts, ports, credentials, queries, or fragments.
If the user has not separately authorized live integration, finish here with an offline-blocked result and instructions for what would need explicit approval. If live execution is authorized, read references/live-refresh-protocol.md in full before any action.
After an externally authorized Refresh has produced a destination and report, load and verify those artifacts; never synthesize a successful report. Run a post-Refresh static audit against the frozen manifest and bind it to the destination bytes.
Citation and bibliography UI evidence must come from separate disposable, cancelled checks. Persist each strict evidence record write-once. Require unchanged destination, source, and working-copy digests and stable before/open/after field snapshots.
Assemble finalization only when all required artifacts exist and verify:
Freeze the finalization record write-once. Never treat a directory name, a success message, or an unbound screenshot as proof.
Use the run journal and artifact lineage to recover only to the highest phase whose required files, hashes, parents, and state transitions still verify. Acquire the run lock before state mutation and use stale-lock recovery rules; never break a live lock.
Rollback is a proposal, not an automatic deletion or overwrite. Generate copy-only steps to a new destination and retain every source, candidate, diagnostic, audit, and journal artifact.
Read references/recovery-and-rollback.md for transition and lineage details.
The 2026-08-15 live test revealed that requiring a human confirmation at every step is unnecessary. Adopt this policy:
ZoteroRefresh call;ZoteroAddEditCitation, ZoteroAddEditBibliography).Before any phase that touches live Word/Zotero, state these dependencies and help the user satisfy them:
127.0.0.1:23119.zotero_mcp package importable from Python. Locate it (installed
package, repository src, or a .venv) and tell the user how it will be
invoked (e.g. PYTHONPATH or the interpreter). If it is missing, stop
with the exact install/locate step instead of guessing.ZOTERO_LIBRARY_ID +
ZOTERO_API_KEY in ~/.config/zotero-mcp/config.json under client_env
(see references/zotero-mcp-configuration.md), followed by a connector
restart. If writes fail with "local-only mode", do not retry; re-check this
step.python -c "import zotero_mcp") and confirm the Local API port.The agent should proactively point the user to
references/zotero-mcp-configuration.md (credentials) and
references/live-run-recipe.md (end-to-end run) whenever a dependency check
fails or the user asks how to set something up.
All reusable scripts live inside this Skill under scripts/ (they are copied
into the archive and are usable wherever the Skill is installed):
scripts/run_live_workflow.py — parameterized offline phases
(candidate-build, authorize, post-refresh-audit, finalize).scripts/refresh_word_zotero.ps1 — the one-shot live Word/Zotero Refresh
wrapper (executed only under authorization).scripts/validate_word_zotero_ui.ps1 — cancelled disposable dialog evidence.scripts/verify_skill.py — offline structural verification of this tree.These scripts are generic: they take --run-root, --task-id, --source,
--selection, --style-id and read ZOTERO_LIBRARY_ID/ZOTERO_API_KEY from
the zotero-mcp configuration. They must never contain machine-specific paths or
user identity. See references/live-run-recipe.md for the end-to-end sequence
and references/zotero-mcp-configuration.md for connector setup.
<original-stem>_引文完成版.docx) and a delivery directory, then
waits for the user to confirm before copying anything. Never invent a final
name or path.For implementation or Skill changes, use offline/static verification only:
tests/word_citations suite;scripts/verify_skill.py for this Skill tree;skill-creator/scripts/quick_validate.py and packaging utility.Use references/verification-matrix.md for exact categories and stop conditions. Never report a passing run when pytest output contains failures, a timeout, or KeyboardInterrupt, even if a detached host reports exit code 0.
Report:
ZoteroRefresh, Zotero Local API, or Zotero writes were executed.A default offline run must state explicitly: Word not launched; Refresh wrapper not executed; Zotero not modified.
© xuzhougeng, AGPL-3.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 14 other files (scripts, references, assets) in skills/word-zotero-citations of xuzhougeng/wisp-science.
Open the folder on GitHubat commit 565deb1
Word Zotero Citations next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Word Zotero Citations this skillxuzhougeng/wisp-science | 1k | — | ~3.7k | Automated safety check: Pass | AGPL-3.0 | |
| CLI Anything ZoteroPiaoyangGuohai1/cli-anything-zotero | 138 | — | ~2.6k | Automated safety check: Pass | Apache-2.0 | |
| ExportZimoLiao/scholaraio | 577 | — | ~1.6k | Automated safety check: Pass | MIT | |
| Manage RefsAperivue/medsci-skills | 333 | — | ~4.1k | Automated safety check: Pass | MIT | |
| Format References Zoteroaipoch/medical-research-skills | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | |
| Latex To Word Workflowhajimi-kun/latex-to-word-workflow | 128 | — | ~2.3k | Automated safety check: Pass | MIT |
PiaoyangGuohai1/cli-anything-zotero
Full-featured CLI for Zotero reference management. An agent skill from PiaoyangGuohai1/cli-anything-zotero.
ZimoLiao/scholaraio
A skill your agent uses when the user needs BibTeX, RIS, Markdown reference lists, filtered citation exports, custom citation styles, or a Markdown-to-DOCX export for sharing.
Aperivue/medsci-skills
A skill your agent uses when references must be written, rendered or converted.
aipoch/medical-research-skills
Zotero reference formatting workflow. An agent skill from aipoch/medical-research-skills.
hajimi-kun/latex-to-word-workflow
Load when the user asks to convert an academic LaTeX manuscript, thesis, or report into an editable Word DOCX, adapt it to a Word template, preserve citations or cross-references, or diagnose a…
Imbad0202/academic-research-skills
Screens records for systematic, scoping and rapid reviews against fixed eligibility rules, using two blinded AI reviewers and a third adjudicator, with traceable PRISMA counts.
xuzhougeng/wisp-science
A skill your agent uses when designing, reviewing, or implementing single-cell RNA-seq QC in Python or R with a human-in-the-loop, data-driven approach.
xuzhougeng/wisp-science
学术审查 / research-integrity screening of a manuscript's figures and reported numbers.
xuzhougeng/wisp-science
将概念、理论或分析方法类图书蒸馏为证据可追溯、经人工门禁审核且不暴露书名、作者、出版社等来源身份的任务型 Skill 候选。用于新建或恢复图书蒸馏、以本地 Tesseract 扫描 DOCX 全部内嵌图像或 Poppler 渲染的扫描 PDF 全页、建立 source map 与 evidence/claim/relation/capability…
xuzhougeng/wisp-science
Create, update, validate, and evaluate Wisp skills. An agent skill from xuzhougeng/wisp-science.
xuzhougeng/wisp-science
Set up and validate a reproducible Python or R environment on a Wisp execution context.
xuzhougeng/wisp-science
Build a sourced research dossier for one therapeutic indication — patient population, epidemiology, disease biology, standard of care, regulatory path, and landmark trials.
Works with
Categories
Build, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow. Word Zotero Citations is an agent skill from xuzhougeng/wisp-science. Build, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow.
Word Zotero Citations fits situations like: word–Zotero citation conversion; static OOXML citation audits; mocked/offline validation; refresh authorization/report review.
Run `npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a claude-code`. Or copy the skill folder (skills/word-zotero-citations in xuzhougeng/wisp-science) into .claude/skills/word-zotero-citations in your project. Claude Code loads it when a task matches its description.
Run `npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a codex`. Or copy the skill folder (skills/word-zotero-citations in xuzhougeng/wisp-science) into .agents/skills/word-zotero-citations in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add xuzhougeng/wisp-science --skill word-zotero-citations -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/word-zotero-citations, .gemini/skills/word-zotero-citations, .github/skills/word-zotero-citations and .opencode/skills/word-zotero-citations in your project.
Going by SKILL.md and its folder, Word Zotero Citations needs PowerShell and Python for the scripts in its folder, the command-line tools its instructions call (python) and credentials named ZOTERO_API_KEY. Our summary lists: Python 3; PowerShell; A credential in ZOTERO_API_KEY.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
Word Zotero Citations is published under the AGPL-3.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 3.7k tokens (SKILL.md is roughly 15k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 7.8k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Word Zotero Citations: CLI Anything Zotero (PiaoyangGuohai1/cli-anything-zotero, 138 stars), Export (ZimoLiao/scholaraio, 577 stars), Manage Refs (Aperivue/medsci-skills, 333 stars) and Format References Zotero (aipoch/medical-research-skills, 1.9k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
xuzhougeng (a GitHub user) maintains it in xuzhougeng/wisp-science, which has 1,027 GitHub stars. The repository holds 25 skills in this directory. The repository was last updated on October 11, 2026.
Source: xuzhougeng/wisp-science on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.