Agent skill

Academic Paper Reproduction Methodology

by xjtulyc in xjtulyc/MedgeClaw

Six-phase process for reproducing a published paper's results from provided data, from variable mapping and sample filtering through regression tables and a written report.

No licenceAuto-check passedResearch & Science

SKILL.md written in Chinese; this summary is our English description.

Install Academic Paper Reproduction Methodology

skills CLI
$ npx skills add xjtulyc/MedgeClaw --skill paper-reproduce -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install xjtulyc/MedgeClaw paper-reproduce --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/xjtulyc/MedgeClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/paper-reproduce .claude/skills/paper-reproduce && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
paper-reproduce
GitHub stars
617
Used in
1 other repo
Token cost
~1.3k tokens
SKILL.md length
220 words
Files
1
Skills in repo
6
Repo updated
First seen
Licence
None found

At a glance

Six-phase process for reproducing a published paper's results from provided data, from variable mapping and sample filtering through regression tables and a written report.

  • Works in 6 steps: 任务理解 + 数据探索 → 变量构建 + 验证 → 样本筛选 → …
  • Reproducing the tables and statistics from a published observational study
  • SKILL.md covers 核心原则, 复现流程(6 阶段), 输出目录结构 and 常见陷阱, plus 1 more section
  • Calls docker

What it does

The method rests on four principles: explore the data before modeling anything, since variable names and codings should never be assumed; check the sample size against the paper at every filtering step; expect and record differences between a harmonized dataset and the original rather than pretending they do not exist; and report intermediate results as each phase finishes instead of waiting for the whole pipeline to run.

Phase one reads the paper or task document to extract sample filtering steps, variable definitions and expected table values, then explores the data's actual shape and columns. Finding the right variable uses four checks in order: an exact name match, a semantic keyword search, a check that the value range matches what the paper describes, and cross-validation against a known relationship such as a total equaling the sum of its parts, because harmonized datasets often rename variables completely.

Later phases build and validate each variable immediately after constructing it, filter the sample step by step while comparing the remaining count to the paper's reported number at each step, then run descriptive statistics and regression analysis, standardizing variables before building interaction terms and re-standardizing within each subgroup for stratified analysis. A deviation of more than 10 percent at any filtering step is a signal to stop and investigate rather than continue.

When your agent uses it

  • Reproducing the tables and statistics from a published observational study
  • Mapping harmonized dataset variables back to the names used in a paper
  • Explaining a sample-size or statistic mismatch against a paper's reported numbers

Example prompts

  • “Reproduce Table 2 from this paper using the harmonized dataset in data.dta.”
  • “Map the cognition variables in our data to the ones named in this paper.”
  • “Our sample size is off by 15% at the exclusion step, help me find why.”

Requirements

  • The published paper plus its underlying data file

Workflow steps

6 steps, taken from the step headings in SKILL.md.

  1. 任务理解 + 数据探索
  2. 变量构建 + 验证
  3. 样本筛选
  4. 统计分析
  5. 结果对比 + 偏差分析
  6. 输出文档

What it can do on your machine

Read from SKILL.md and the folder at commit fef51d3. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Shell commands in SKILL.md call:

    • docker

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md. Its commands use docker, which can reach the network depending on how they are called.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Academic Paper Reproduction Methodology loads about 1.3k tokens when it runs. Until then it costs about 148 tokens; SKILL.md has 220 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~148
When it runs · the whole SKILL.md, loaded when a task matches
~1.3k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 220 words (~1,319 tokens).

name
paper-reproduce

Read the full SKILL.md on GitHub

Files

Just SKILL.md in skills/paper-reproduce of xjtulyc/MedgeClaw.

Open the folder on GitHubat commit fef51d3

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in xjtulyc/MedgeClaw, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Academic Paper Reproduction Methodology next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Academic Paper Reproduction Methodology compared with similar skills
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Academic Paper Reproduction Methodology this skillxjtulyc/MedgeClaw6171 repos~1.3kAutomated safety check: PassNone
Light Experiment CodingLight0305/Light-skills640—~2.3kAutomated safety check: PassMIT
Fcr Revision And Rebuttalfranklee16/academic-research-skills2231 repos~1.1kAutomated safety check: PassNone
Aistats Writing Stylebrycewang-stanford/Awesome-Journal-Skills1.2k—~865Automated safety check: PassMIT
Icml Experimentsbrycewang-stanford/Awesome-Journal-Skills1.2k—~843Automated safety check: PassMIT
Peer ReviewK-Dense-AI/claude-scientific-writer2.4k2 repos~3.1kAutomated safety check: NotesMIT

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Works with

Questions about Academic Paper Reproduction Methodology

What does Academic Paper Reproduction Methodology do?

Six-phase process for reproducing a published paper's results from provided data, from variable mapping and sample filtering through regression tables and a written report. The method rests on four principles: explore the data before modeling anything, since variable names and codings should never be assumed; check the sample size against the paper at every filtering step; expect and record differences between a harmonized dataset and the original rather than pretending they do not exist; and report intermediate results as each phase finishes instead of waiting for the whole pipeline to run.

When should I use Academic Paper Reproduction Methodology?

Academic Paper Reproduction Methodology fits situations like: reproducing the tables and statistics from a published observational study; mapping harmonized dataset variables back to the names used in a paper; explaining a sample-size or statistic mismatch against a paper's reported numbers.

How do I install Academic Paper Reproduction Methodology in Claude Code?

Run `npx skills add xjtulyc/MedgeClaw --skill paper-reproduce -a claude-code`. Or copy the skill folder (skills/paper-reproduce in xjtulyc/MedgeClaw) into .claude/skills/paper-reproduce in your project. Claude Code loads it when a task matches its description.

How do I install Academic Paper Reproduction Methodology in Codex?

Run `npx skills add xjtulyc/MedgeClaw --skill paper-reproduce -a codex`. Or copy the skill folder (skills/paper-reproduce in xjtulyc/MedgeClaw) into .agents/skills/paper-reproduce in your project. Codex loads it when a task matches its description.

Can I use Academic Paper Reproduction Methodology in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add xjtulyc/MedgeClaw --skill paper-reproduce -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/paper-reproduce, .gemini/skills/paper-reproduce, .github/skills/paper-reproduce and .opencode/skills/paper-reproduce in your project.

What does Academic Paper Reproduction Methodology need to run?

Going by SKILL.md and its folder, Academic Paper Reproduction Methodology needs the command-line tools its instructions call (docker). Our summary lists: The published paper plus its underlying data file.

Does Academic Paper Reproduction Methodology access the network?

SKILL.md contains no URLs. Its commands use docker, which can reach the network depending on how they are called. This is read from the text; nothing was executed.

Is Academic Paper Reproduction Methodology safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Academic Paper Reproduction Methodology use?

No licence was found for Academic Paper Reproduction Methodology or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Academic Paper Reproduction Methodology use?

About 1.3k tokens (SKILL.md is roughly 5.3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Academic Paper Reproduction Methodology?

Skills that share tags, products or a category with Academic Paper Reproduction Methodology: Light Experiment Coding (Light0305/Light-skills, 640 stars), Fcr Revision And Rebuttal (franklee16/academic-research-skills, 223 stars), Aistats Writing Style (brycewang-stanford/Awesome-Journal-Skills, 1.2k stars) and Icml Experiments (brycewang-stanford/Awesome-Journal-Skills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Academic Paper Reproduction Methodology?

xjtulyc (a GitHub user) maintains it in xjtulyc/MedgeClaw, which has 617 GitHub stars. The repository holds 6 skills in this directory. The repository was last updated on March 12, 2026.

Source: xjtulyc/MedgeClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.