Agent skill

Biomedical Search

Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels.

Install Biomedical Search

skills CLI

$ npx skills add wu-yc/LabClaw --skill biomedical-search -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI

$ gh skill install wu-yc/LabClaw biomedical-search --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy

$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/literature/biomedical-search .claude/skills/biomedical-search && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Paste into Claude Code

Install the "biomedical-search" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/biomedical-search into .claude/skills/biomedical-search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "biomedical-search", then confirm the skill loads.

Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

$skill-installer

$skill-installer install https://github.com/wu-yc/LabClaw/tree/main/skills/literature/biomedical-search

Type this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.

skills CLI

$ npx skills add wu-yc/LabClaw --skill biomedical-search -a codex

Project install goes to .agents/skills/; add -g for ~/.codex/skills/.

GitHub CLI

$ gh skill install wu-yc/LabClaw biomedical-search --agent codex

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/literature/biomedical-search .agents/skills/biomedical-search && rm -rf skills-src

Use ~/.agents/skills/ instead of .agents/skills for a personal install.

Codex skills documentation · loads skills from .agents/skills/

Paste into Codex

Install the "biomedical-search" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/biomedical-search into .agents/skills/biomedical-search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "biomedical-search", then confirm the skill loads.

Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

skills CLI

$ npx skills add wu-yc/LabClaw --skill biomedical-search -a cursor

Project install goes to .agents/skills/; add -g for ~/.cursor/skills/.

GitHub CLI

$ gh skill install wu-yc/LabClaw biomedical-search --agent cursor

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/literature/biomedical-search .cursor/skills/biomedical-search && rm -rf skills-src

Use ~/.cursor/skills/ instead of .cursor/skills for a personal install.

Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/

Paste into Cursor

Install the "biomedical-search" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/biomedical-search into .cursor/skills/biomedical-search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "biomedical-search", then confirm the skill loads.

Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

gemini skills install

$ gemini skills install https://github.com/wu-yc/LabClaw.git --path skills/literature/biomedical-search

--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.

skills CLI

$ npx skills add wu-yc/LabClaw --skill biomedical-search -a gemini-cli

Project install goes to .agents/skills/; add -g for ~/.gemini/skills/.

GitHub CLI

$ gh skill install wu-yc/LabClaw biomedical-search --agent gemini-cli

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/literature/biomedical-search .gemini/skills/biomedical-search && rm -rf skills-src

Use ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.

Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/

Paste into Gemini CLI

Install the "biomedical-search" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/biomedical-search into .gemini/skills/biomedical-search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "biomedical-search", then confirm the skill loads.

Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

GitHub CLI

$ gh skill install wu-yc/LabClaw biomedical-search

Installs for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).

skills CLI

$ npx skills add wu-yc/LabClaw --skill biomedical-search -a github-copilot

Project install goes to .agents/skills/; add -g for ~/.copilot/skills/.

Manual copy

$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/literature/biomedical-search .github/skills/biomedical-search && rm -rf skills-src

Use ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.

GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/

Paste into GitHub Copilot

Install the "biomedical-search" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/biomedical-search into .github/skills/biomedical-search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "biomedical-search", then confirm the skill loads.

GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

skills CLI

$ npx skills add wu-yc/LabClaw --skill biomedical-search -a opencode

OpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.

GitHub CLI

$ gh skill install wu-yc/LabClaw biomedical-search --agent opencode

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/wu-yc/LabClaw.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/literature/biomedical-search .opencode/skills/biomedical-search && rm -rf skills-src

Use ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.

OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/

Paste into OpenCode

Install the "biomedical-search" agent skill from https://github.com/wu-yc/LabClaw/tree/main/skills/literature/biomedical-search into .opencode/skills/biomedical-search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "biomedical-search", then confirm the skill loads.

OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

Facts

Skill name: biomedical-search
GitHub stars: 1.1k
Used in: 2 other repos
Token cost: ~1.4k tokens
SKILL.md length: 337 words
Files: 1
Skills in repo: 68
Repo updated: Mar 19, 2026
First seen: Oct 7, 2026
Licence: MIT

At a glance

Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels.

Works in 2 steps: Node.js 18+ (uses built-in fetch) → Valyu API key from…
Tasks that involve Academic paper search
SKILL.md covers Why This Skill is Powerful, Requirements, CRITICAL: Script Path Resolution and API Key Setup Flow, plus 8 more sections
Calls jq; reaches api.valyu.ai

What it does

Biomedical Search is an agent skill from wu-yc/LabClaw. Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.

Its SKILL.md is about 1.4k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Research & Science, covering Academic paper search and Clinical and healthcare research. It works with PubMed. The repository describes itself as: LabClaw – Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists). The licence is MIT.

When your agent uses it

Tasks that involve Academic paper search
Tasks that involve Clinical and healthcare research

Example prompts

“/biomedical-search”

Requirements

Python 3
Node.js

Workflow steps

2 steps, taken from the first numbered list in SKILL.md.

Node.js 18+ (uses built-in fetch)
Valyu API key from https://platform.valyu.ai ($10 free credits)

What it can do on your machine

Read from SKILL.md and the folder at commit df37802. It shows what the files ask for, not the result of running them.

Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Shell commands in SKILL.md call:
- jq
From the folder's file list and the shell code blocks in SKILL.md.
Network
Hosts in commands or code, which the agent is likely to contact:
- api.valyu.ai
Also links to:
- platform.valyu.ai
- docs.valyu.ai
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Biomedical Search loads about 1.4k tokens when it runs. Until then it costs about 39 tokens; SKILL.md has 337 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it: ~39
When it runs · the whole SKILL.md, loaded when a task matches: ~1.4k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from wu-yc/LabClaw at commit df37802, republished under its MIT licence (© wu-yc). 337 words, ~1,405 tokens.

Download SKILL.mdSave it as .claude/skills/biomedical-search/SKILL.md (or your agent's skills folder).

name: biomedical-search
description: Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.
keywords: biomedical-search, clinical-research, evidence-based-medicine, medical-research, comprehensive-search, semantic-search
license: MIT

Biomedical Search

Search across all major biomedical databases (PubMed, bioRxiv, medRxiv, ClinicalTrials.gov, FDA drug labels) simultaneously using natural language queries powered by Valyu's semantic search API.

Why This Skill is Powerful

No API Parameter Parsing: Just pass natural language queries directly - no need to construct complex search parameters
Semantic Search: Understands the meaning of your query, not just keyword matching
Full-Text Access: Returns complete content from literature, trials, and drug labels
Image Links: Includes figures and images when available
Comprehensive Coverage: Search across PubMed, bioRxiv, medRxiv, clinical trials, and drug labels simultaneously
Unified Results: Get results from all biomedical sources in a single query

Requirements

Node.js 18+ (uses built-in fetch)
Valyu API key from https://platform.valyu.ai ($10 free credits)

CRITICAL: Script Path Resolution

The scripts/search commands in this documentation are relative to this skill's installation directory.

Before running any command, locate the script using:

bash

BIOMEDICAL_SCRIPT=$(find ~/.claude/plugins/cache -name "search" -path "*/biomedical-search/*/scripts/*" -type f 2>/dev/null | head -1)

Then use the full path for all commands:

bash

$BIOMEDICAL_SCRIPT "CAR-T cell therapy" 20

API Key Setup Flow

When you run a search and receive "setup_required": true, follow this flow:

Ask the user for their API key: "To search biomedical databases, I need your Valyu API key. Get one free ($10 credits) at https://platform.valyu.ai"
Once the user provides the key, run:
bash
```
scripts/search setup <api-key>
```
Retry the original search.

When to Use This Skill

Complete biomedical information gathering
Clinical research combined with basic science
Finding trials, literature, and official drug info together
Evidence-based medicine research
Disease understanding from multiple angles

Output Format

json

{
  "success": true,
  "type": "biomedical_search",
  "query": "CAR-T cell therapy",
  "result_count": 20,
  "results": [
    {
      "title": "Title",
      "url": "https://...",
      "content": "Full content...",
      "source": "pubmed|biorxiv|medrxiv|clinical-trials|drug-labels",
      "relevance_score": 0.95,
      "images": ["https://example.com/figure1.jpg"]
    }
  ],
  "cost": 0.035
}

Processing Results

With jq

bash

# Get titles
scripts/search "query" 20 | jq -r '.results[].title'

# Get URLs
scripts/search "query" 20 | jq -r '.results[].url'

# Extract full content
scripts/search "query" 20 | jq -r '.results[].content'

# Filter by source type
scripts/search "query" 20 | jq -r '.results[] | select(.source == "clinical-trials") | .title'

Common Use Cases

Clinical Research Planning

bash

# Gather evidence for clinical study design
scripts/search "phase 2 trials checkpoint inhibitors melanoma" 50

Drug Safety Assessment

bash

# Search literature, labels, and trials for safety data
scripts/search "SGLT2 inhibitors cardiovascular safety" 40

Treatment Protocol Development

bash

# Find current practice and emerging approaches
scripts/search "pembrolizumab dosing regimens NSCLC" 30

Medical Writing

bash

# Comprehensive research for medical communications
scripts/search "JAK inhibitors rheumatoid arthritis efficacy" 60

Error Handling

All commands return JSON with success field:

json

{
  "success": false,
  "error": "Error message"
}

Exit codes:

0 - Success
1 - Error (check JSON for details)

API Endpoint

Base URL: https://api.valyu.ai/v1
Endpoint: /search
Authentication: X-API-Key header

Architecture

scripts/
├── search          # Bash wrapper
└── search.mjs      # Node.js CLI

Direct API calls using Node.js built-in fetch(), zero external dependencies.

Adding to Your Project

If you're building an AI project and want to integrate Biomedical Search directly into your application, use the Valyu SDK:

Python Integration

python

from valyu import Valyu

client = Valyu(api_key="your-api-key")

response = client.search(
    query="your search query here",
    included_sources=["valyu/valyu-pubmed", "valyu/valyu-biorxiv", "valyu/valyu-medrxiv", "valyu/valyu-clinical-trials", "valyu/valyu-drug-labels"],
    max_results=20
)

for result in response["results"]:
    print(f"Title: {result['title']}")
    print(f"URL: {result['url']}")
    print(f"Content: {result['content'][:500]}...")

TypeScript Integration

typescript

import { Valyu } from "valyu-js";

const client = new Valyu("your-api-key");

const response = await client.search({
  query: "your search query here",
  includedSources: ["valyu/valyu-pubmed", "valyu/valyu-biorxiv", "valyu/valyu-medrxiv", "valyu/valyu-clinical-trials", "valyu/valyu-drug-labels"],
  maxResults: 20
});

response.results.forEach((result) => {
  console.log(`Title: ${result.title}`);
  console.log(`URL: ${result.url}`);
  console.log(`Content: ${result.content.substring(0, 500)}...`);
});

See the Valyu docs for full integration examples and SDK reference.

Files

Just SKILL.md in skills/literature/biomedical-search of wu-yc/LabClaw.

Open the folder on GitHubat commit df37802

Used in 2 other repositories

We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 2 other GitHub owners. This page covers the copy in wu-yc/LabClaw, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Biomedical Search next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Biomedical Search compared with similar skills
Skill	Stars	Used in	Tokens	Auto-check	Licence	Repo updated
Biomedical Search this skillwu-yc/LabClaw	1.1k	2 repos	~1.4k	Automated safety check: Pass	MIT	6 mo ago
Medical Research ToolkitFreedomIntelligence/OpenClaw-Medical-Skills	3.1k	1 repos	~2.4k	Automated safety check: Pass	None	2 mo ago
Pubmed Databasegoogle-deepmind/science-skills	3.2k	2 repos	~2.1k	Automated safety check: Notes	Apache-2.0	yesterday
Meta Feasibility Analyzeraipoch/medical-research-skills	1.9k	—	~1.5k	Automated safety check: Pass	MIT	24 days ago
Baseline Extraction For Clinical Trialsaipoch/medical-research-skills	1.9k	—	~1.2k	Automated safety check: Pass	MIT	24 days ago
Market Research Report Generatoraipoch/medical-research-skills	1.9k	—	~2k	Automated safety check: Pass	MIT	24 days ago

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Works with

PubMed

Questions about Biomedical Search

What does Biomedical Search do?

Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Biomedical Search is an agent skill from wu-yc/LabClaw. Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels.

When should I use Biomedical Search?

Biomedical Search fits situations like: tasks that involve Academic paper search; tasks that involve Clinical and healthcare research.

How do I install Biomedical Search in Claude Code?

Run `npx skills add wu-yc/LabClaw --skill biomedical-search -a claude-code`. Or copy the skill folder (skills/literature/biomedical-search in wu-yc/LabClaw) into .claude/skills/biomedical-search in your project. Claude Code loads it when a task matches its description.

How do I install Biomedical Search in Codex?

Run `npx skills add wu-yc/LabClaw --skill biomedical-search -a codex`. Or copy the skill folder (skills/literature/biomedical-search in wu-yc/LabClaw) into .agents/skills/biomedical-search in your project. Codex loads it when a task matches its description.

Can I use Biomedical Search in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wu-yc/LabClaw --skill biomedical-search -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/biomedical-search, .gemini/skills/biomedical-search, .github/skills/biomedical-search and .opencode/skills/biomedical-search in your project.

What does Biomedical Search need to run?

Going by SKILL.md and its folder, Biomedical Search needs the command-line tools its instructions call (jq). Our summary lists: Python 3; Node.js.

Does Biomedical Search access the network?

SKILL.md names 3 domains. In commands or code: api.valyu.ai; the agent is likely to contact it when it follows the instructions. As links in the text: platform.valyu.ai and docs.valyu.ai. This is read from the text; nothing was executed.

Is Biomedical Search safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Biomedical Search use?

Biomedical Search is published under the MIT licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Biomedical Search use?

About 1.4k tokens (SKILL.md is roughly 5.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Biomedical Search?

Skills that share tags, products or a category with Biomedical Search: Medical Research Toolkit (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars), Pubmed Database (google-deepmind/science-skills, 3.2k stars), Meta Feasibility Analyzer (aipoch/medical-research-skills, 1.9k stars) and Baseline Extraction For Clinical Trials (aipoch/medical-research-skills, 1.9k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Biomedical Search?

wu-yc (a GitHub user) maintains it in wu-yc/LabClaw, which has 1,055 GitHub stars. The repository holds 68 skills in this directory. The repository was last updated on March 19, 2026.

Source: wu-yc/LabClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.

Install Biomedical Search

Facts

At a glance

What it does

When your agent uses it

Example prompts

Requirements

Workflow steps

What it can do on your machine

Tool permissions

Runs code

Network

Credentials

Context cost

Safety

SKILL.md

Biomedical Search

Why This Skill is Powerful

Requirements

CRITICAL: Script Path Resolution

API Key Setup Flow

When to Use This Skill

Output Format

Processing Results

With jq

Common Use Cases

Clinical Research Planning

Drug Safety Assessment

Treatment Protocol Development

Medical Writing

Error Handling

API Endpoint

Architecture

Adding to Your Project

Python Integration

TypeScript Integration

Files

Used in 2 other repositories

Compare with similar skills

Similar skills

More from wu-yc/LabClaw

Related

Questions about Biomedical Search