Finding Discovery

Security Finding Discovery

Objective

Investigate the proposed code or code changes for technically plausible security vulnerabilities using the threat model as context.

Standard and Deep discovery workers follow their self-contained coordinator prompts; they do not invoke this skill. For an explicit standalone repository-discovery request, apply the relevant checklist below directly to the authorized current source without running the diff-only workflow or starting another scan.

Artifact Resolution

The path references in this skill are the default locations for this phase. If the user explicitly provides a different path for a required input or output, use the user-provided path instead of the corresponding default path referenced in this skill. If a required input is still missing, stop and ask the user for it before continuing. Use the shared scan artifact path conventions in ../../references/scan-artifacts.md.

SECURITY.md Guidance Gate

Read ../../references/security-guidance.md and resolve the applicable policy before inspecting each source file. A delegated file-review worker must do the same before reading its assigned source.

Compact Diff Workflow

When a running diff scan already supplies its file inventory through list_codex_security_review_items, review that inventory directly and record all candidates once with record_codex_security_discovery_candidates. Do not generate ranked worklists, per-finding ledgers, discovery receipts, or discovery reports. Skip the legacy workflow and artifact requirements below.

Code Diff Workflow

For a targeted code diff without an existing compact inventory:

• Read ../security-scan/references/scan-artifacts-and-ledger.md.
• Generate rank_input.jsonl deterministically from changed source-like files with <python_command> <plugin_dir>/scripts/generate_rank_input.py make-diff-rank-input --repo <repo_root> --base <base> --mode revisions --head <head> --out <discovery_dir>/rank_input.jsonl for PR, commit, and branch diffs, or <python_command> <plugin_dir>/scripts/generate_rank_input.py make-diff-rank-input --repo <repo_root> --base <base> --mode local-patch --out <discovery_dir>/rank_input.jsonl for a local patch.
• Copy every diff row into deep_review_input.jsonl with <python_command> <plugin_dir>/scripts/generate_rank_input.py copy-deep-review-input --rank-input <discovery_dir>/rank_input.jsonl --out <discovery_dir>/deep_review_input.jsonl. Diff scans do not rank or drop changed files before deep review.
• Add directly supporting files required to understand the changed security behavior only when repository evidence shows they are needed. Do not use them to broaden into unrelated repository-wide enumeration.
• Deep-review every file in deep_review_input.jsonl using the shared scoped file-review rules.
• Stay anchored to the changed code and directly supporting files. Unchanged siblings are context or negative controls unless the diff newly reaches them, weakens their shared control, or changes a shared sink/helper they depend on.
• When the diff is too large to review credibly as one parent-agent pass, use file-review subagents when they are available under the resolved scan authorization and follow the shared scoped deep-review rules in ../security-scan/references/scan-artifacts-and-ledger.md#scoped-deep-review.

Discovery Checklist

Use this checklist to keep discovery specific without turning it into validation or attack-path analysis:

• Use tools to inspect the changed files and the minimum supporting files they rely on before deciding anything.
• Treat the commit message and title as potentially incomplete or misleading; trust the actual code path more than the narrative.
• Follow the entire changed-code chain far enough to understand how the diff affects authorization, trust boundaries, dangerous sinks, or security controls.
• Prefer multiple distinct finding families only when they come from different root causes; do not split one issue into cosmetic variants, but keep independently reachable instances as separate candidate entries.
• When the diff changes a shared helper, guard, route pattern, template pattern, or sink wrapper, expand to sibling call sites that the changed code directly affects, and keep each vulnerable instance addressable.
• Look for attacker-controlled input, broken enforcement, or dangerous sinks introduced or made reachable by the change.
• Stay anchored to the diff and the supporting files it depends on rather than drifting into unrelated repository scanning.
• For advisory-seeded repository-wide and scoped-path scans, keep any supplied advisory row id, exact file, line, source, sink, or broken-control hint visible in the candidate ledger. A neighboring same-CWE finding can be an additional candidate, but it does not satisfy the seeded row unless it covers the same vulnerable control and effect.
• Do not group many vulnerable files under one candidate when the files have separate line-level source/sink/control evidence.
• When a dangerous sink has multiple call sites, enumerate each call site with its own source and closest control.
• When repeated templates, query builders, parser operations, auth/object endpoints, or shared-helper callers are independently reachable, keep each vulnerable file and sink/control line as its own candidate instance even if the final report later groups related prose.
• When source/sink evidence crosses a wrapper into a shared sink/control helper, include both locations in the candidate so validation can test reachability without losing the root vulnerable line.
• When a concrete operation, strategy, converter, validator, or handler subclass selects the attacker-controlled operation semantics and delegates into a shared broken control or sink, include that subclass method or constructor as an affected candidate location alongside the shared helper. Do not replace it with only the abstract base class or shared helper.
• If a candidate claim says that a shared parser, loader, evaluator, auth guard, or operation family affects "all", "every", or "any" concrete implementation, enumerate the concrete implementations that make that claim true. Do not leave concrete vulnerable classes only in prose.
• When a broad candidate bucket names a whole operation family such as "all SQL trigger variants", "all deserialization variants", "all path traversal helpers", "all SSRF modes", "all generated framework adapters", or "all unauthenticated mutation endpoints", expand it into child candidates keyed by the concrete exported function, route branch, sink statement, API mode, parser/deserializer variant, or protected action before handing the set to validation.
• If one route or helper exposes multiple dangerous operations in the same family, such as execute/executemany/executescript, pickle.load/pickle.loads/yaml.load/yaml.load_all, separate path/file helper methods, insert/select/delete/update query builders, or create/delete/reset/admin/job actions without auth, keep those operations as separate candidate instances when attackers can trigger them independently.
• Treat shared or generated wrappers as reachability evidence, not as a reason to collapse child sink variants. The wrapper can be a shared affected location, but each independent sink, control, or protected action still needs its own candidate id.
• When the scan context or evidence seeds a specific boundary package, class family, or vulnerability family, keep that seeded row open until that exact package or class family is closed. A nearby same-family finding is supporting context, not a replacement for the seeded root control.
• When CVE, GHSA, advisory, release, issue, or package-version context is provided, use any advisory seed research artifact as discovery input. Preserve seed-researched files/functions/classes/hunks as ledger rows until local code evidence closes them as reportable, suppressed, not applicable, or deferred.
• When CVE/advisory context has a generic or unhelpful category, do not fall back directly to broad hotspot findings. First derive a seed shortlist from advisory/fix/release/security-test sources when available; if that is unavailable, run a local regression-seed pass over project-specific protocol, parser, validator, utility, and version/comparison helpers plus the CVE/advisory terms.
• If discovery opens or greps a seed-target file, class, package, or hunk, create an explicit closure row for it. Do not leave the exact seed only in tool output, background context, or suppressed-candidate prose. If a broader sibling finding shares the same proof tuple, keep the seed anchor file/line as an affected location; otherwise close the seed row separately.
• For advisory-led rows, do not replace the exact seeded construct with a neighboring hotspot just because the neighboring issue is easier to exploit or validate. Keep the seeded row open until local repository evidence independently supports or disproves the same source, broken control, and impact tuple.
• For shared deserialization, class-resolution, template, and auth controls, treat the resolver/filter/allowlist/denylist/guard line as a candidate location when downstream transports or callers prove reachability. Do not anchor only on the more dramatic transport if the broken control is reusable.
• For deserialization and object-construction families, enumerate concrete codec, deserializer, converter, and container handlers registered by the parser or serialization config, including array, collection, map, bean, enum, throwable, and generic-object handlers. A top-level parser/config finding does not close a concrete codec row when that codec recursively invokes parsing, type resolution, conversion, or object construction on attacker-controlled data.
• For file-format object models, enumerate primitive/container helper methods that convert or traverse attacker-controlled document structures, including to*Array, get*, getObject, numeric conversion, parse*, iterator, size, unchecked casts, and allocation loops. Treat these helpers as candidate root controls when malformed documents can trigger type confusion, exceptions, unbounded traversal, or memory/CPU exhaustion.
• If the repository-wide worklist or coverage ledger identifies a central object-model package for an untrusted format, include that package's array, dictionary, node, collection, and primitive conversion helpers as discovery rows before closing the parser family. A parser, filter, or codec finding in a neighboring package does not close unchecked conversion helpers in the core object model.
• Object-model helper sweeps create mandatory discovery rows first, not automatic reportable findings. Promote them only when malformed or adversarial input plausibly reaches the helper and the missing type, size, shape, recursion, numeric, or conversion guard can cause crash, denial of service, parser confusion, authorization bypass, or another concrete security impact.
• Do not suppress deterministic parser/helper crashes as mere robustness when untrusted remote, protocol, document, archive, or package input can reach the missing guard and abort a service, request worker, parser pipeline, or security negotiation. Suppression needs exact containment evidence such as caller-side recovery, input prevalidation equivalent to the missing guard, or a non-security-only boundary.
• For structured patch/edit/apply APIs such as JSON Patch, Graph Patch, document edits, or config mutations, enumerate concrete request-selected operations like add, remove, replace, move, copy, and test. Keep operation-specific path transforms, array append handling, wildcard selection, or object-binding lines candidate-visible when they feed a shared evaluator or binder.
• In concrete operation classes, inspect specialized helper methods and not only the top-level perform, handle, or apply override. If the operation-specific helper splits, filters, canonicalizes, or rebuilds attacker-controlled paths before delegating to a shared evaluator or binder, use that helper line as the candidate root control.
• When a concrete operation has special-case branches such as append, wildcard, fallback, copy/move from, default-value, or type-resolution paths, keep the branch predicate and branch-local transform lines as affected locations when they bypass or narrow the shared validator. A shared helper finding does not close branch-specific root controls.
• When class-filter, allowlist, denylist, blacklist, whitelist, or resolver logic is duplicated across core, server, client, remoting, plugin, or import packages, include the runtime/exported equivalents as candidate locations when they implement the same broken control. A transport callsite proves reachability, but it does not replace the reusable resolver implementation.
• In framework or library scans, stored client, tenant, application, identity-provider, exception, or imported-configuration values are cross-boundary inputs when later rendered, evaluated, parsed, or used for authorization and the instance has a plausible runtime path from an application, tenant, identity provider, import, or other boundary. Do not suppress solely because the writer is outside the current repository unless repository evidence proves the value is trusted-only for normal deployments.
• For SQL/NoSQL/LDAP/XPath and similar query APIs, do not suppress a candidate solely because the endpoint already accepts user-controlled data, because the operation is an insert/update, or because a later business check appears to limit the final application effect. If attacker-controlled input reaches query syntax or selector operators through a plausible runtime path, carry the candidate to validation with the later check recorded as possible counterevidence.
• Do not collapse separate high-impact proof tuples into one candidate only because they share a route or helper. Split command execution, SSRF, path/file impact, XML/parser behavior, XSS/template execution, and authz/state-change impact when the sink, closest control, or impact differs.
• For outbound request surfaces such as downloadFrom, URL importers, webhook/callback clients, preview/render fetchers, and redirect-following HTTP clients, enumerate each attacker-controlled destination source and its closest allow/deny/filter/redirect control. Do not suppress SSRF because the fetch/callback is an intended feature, because filters are optional or empty by default, or because a sibling route found a louder file/path issue; keep the network row when user input can select a destination and the hard boundary is incomplete, operator-configured, or only pre-request.
• In XML/parser/deserializer surfaces, enumerate default parser factories, converters, validators, transformers, unmarshal/parse calls, and handler entrypoints independently. A safe sibling parser path is negative control for that sibling, not suppression evidence for a different default factory or converter.
• For command/action runners, enumerate every attacker-controllable argument type and execution mode before closing command-injection coverage. Treat type-safety maps, unsafe-type denylists, template substitution, shell wrapping, direct-exec branches, webhook/API argument ingestion, and frontend-only widget constraints as separate controls. A denylist that covers raw, url, or email does not close password, checkbox, confirmation, choice, or other nil/no-op typecheck branches that can still render into shell commands.
• For XML parser and converter candidates, include feature-setup and resolver lines when hardening is best-effort, fail-open, or incomplete. FEATURE_SECURE_PROCESSING alone, swallowed/logged setFeature failures, or a safe default parser does not suppress caller-supplied parser factories/readers or converter paths that create SAX/DOM/StAX/Transformer sources from untrusted data.
• For resource-serving and static-file paths, include the allowlist, matcher, canonicalization, URL decoding, and resource-selection line that decides whether an attacker-chosen path is allowed. Do not replace a vulnerable legacy or package API handler with a safer sibling handler. For restore/import/export, backup, admin, or login-named routes, also verify the exact global middleware and decorator semantics before assuming authentication is required; optional or conditional login wrappers keep the route anonymous when the enabling auth configuration is absent.
• For path-sensitive filesystem families, enumerate concrete exported operations for restore/import/export, backup/restore, archive extraction, file copy/move, download/open, and key/config fetch helpers. Keep decode, join, normalize, canonicalize, strip-prefix, extension-check, and destination-selection lines candidate-visible for each independently reachable operation.
• For archive extraction and restore/import flows, keep the archive-member name, destination join, containment check, and extract/write call visible as candidate root controls. Do not replace them with a later copy, import, UUID/manifest gate, or top-level file-selection step if extraction or filesystem writes already happened first. Generic claims that a standard-library helper normalizes paths are not enough; keep the row open until the code shows exact per-entry containment before extraction or write, including any symlink, hardlink, metadata, or recursive-copy path that could later promote attacker-controlled content into an imported subtree. Do not require the write to escape the overall app/datastore root; overwriting trusted config, peer-object directories, shared roots, or imported subtrees inside that root still counts as file-impact.
• When upload/archive-member rows have a precise source to decoded/filtered member name to destination join/write tuple, keep them as candidates even if runtime package reproduction is unavailable or confidence is medium. A cleaner download/open traversal or API/auth issue in the same repository is not a reason to drop the archive-member row; report the archive row at calibrated severity/confidence or keep an explicit deferred ledger row with the missing proof.
• When the same product area also has auth, secret, or configuration bugs, keep the path/file candidate open until its own proof tuple is closed. Do not replace it with the louder neighboring issue.
• In framework or library scans, do not suppress a high-impact candidate solely because the affected API is deprecated, opt-in, or documented as dangerous. State that as a precondition; keep the candidate when the shipped runtime code contains a bypassable control in the restricted or normal usage path and the instance has a plausible cross-boundary source and runtime/deployment path.
• In auth/authz surfaces, enumerate public webhook, status, callback, and API endpoints that read protected objects, trigger builds/jobs, or mutate protected state independently from nearby credential or configuration bugs.
• For stateful authentication protocols, include the line that installs or reuses principals, credentials, tokens, issuers, or protocol state after a pre-authentication, TLS-upgrade, redirect, assertion, or identity-provider transition. Missing rebind/reauthentication or validated-vs-consumed mismatches are candidate controls when they can authenticate the wrong identity.
• In SSO/SAML/federation packages, keep response/assertion validators distinct from generic claims authorizers and service-method authorization. Include assertion selection, list indexing, getDOM, cloneNode, signed-object lookup, subject confirmation, recipient, audience, destination, ACS URL, and issuer-binding lines when they decide which assertion is trusted or returned.
• In auth/token/assertion validators, watch for a validation loop or foundValid* flag followed by a separate fixed-index, first/last-element, clone, serialization, or return path. Treat the later object-selection line as the broken control until exact counterevidence proves the validated object and consumed object are identical and equally bound.
• For realm/authenticator packages, enumerate concrete implementations such as LDAP, Kerberos, PAM, SAML, OAuth/OIDC, or custom Realm classes before promoting a nearby generic HTTP auth finding. In TLS-upgraded or multi-step binds, keep the bind/rebind and principal/credential installation line candidate-visible.
• In protocol-heavy repositories, inspect low-level version, capability, feature, and negotiation utility classes even if the most obvious candidates are REST/upload/admin hotspots. Search for helper names such as Version, VersionUtil, versionCompare, versionMatch, Capability, Feature, Negotiation, parseInt, split, matches, and comparator methods, then close paired validator/parser rows explicitly.
• For self-service update routes, include guard or predicate methods that compare requested objects against persisted objects. Treat missing checks on security-sensitive scalar fields and collection aliases as candidate locations when they can change identity, trust state, tenant membership, roles, groups, or account recovery properties.
• When a template or config pattern appears repeatedly, enumerate each affected file/line and note any nearby safe control that should not be reported.
• For diff-scoped scans, include relevant_lines only when the bug overlaps the diff and those lines are genuinely relevant to the issue.
• For recursive placeholder or template findings, include the helper/parser setup line that enables recursive expansion or expression evaluation along with the resolver/evaluation/render line.
• Include CWE IDs when known; use an empty list when the class is unclear.