Hypothesis Generation
spacering-net/codeg
Structured hypothesis formulation from observations. An agent skill from spacering-net/codeg.
Query the STITCH chemical-protein interaction database. An agent skill from QSong-github/DrugClaw.
Install Stitch Query
$ npx skills add QSong-github/DrugClaw --skill stitch-query -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install QSong-github/DrugClaw stitch-query --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/dti/stitch .claude/skills/stitch-query && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "stitch-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitch into .claude/skills/stitch-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "stitch-query", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitchType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add QSong-github/DrugClaw --skill stitch-query -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install QSong-github/DrugClaw stitch-query --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/dti/stitch .agents/skills/stitch-query && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "stitch-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitch into .agents/skills/stitch-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "stitch-query", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add QSong-github/DrugClaw --skill stitch-query -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install QSong-github/DrugClaw stitch-query --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/dti/stitch .cursor/skills/stitch-query && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "stitch-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitch into .cursor/skills/stitch-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "stitch-query", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/QSong-github/DrugClaw.git --path skills/dti/stitch--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add QSong-github/DrugClaw --skill stitch-query -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install QSong-github/DrugClaw stitch-query --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/dti/stitch .gemini/skills/stitch-query && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "stitch-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitch into .gemini/skills/stitch-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "stitch-query", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install QSong-github/DrugClaw stitch-queryInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add QSong-github/DrugClaw --skill stitch-query -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/dti/stitch .github/skills/stitch-query && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "stitch-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitch into .github/skills/stitch-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "stitch-query", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add QSong-github/DrugClaw --skill stitch-query -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install QSong-github/DrugClaw stitch-query --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/dti/stitch .opencode/skills/stitch-query && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "stitch-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/stitch into .opencode/skills/stitch-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "stitch-query", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
stitch-query- GitHub stars
- 116
- Used in
- 1 other repo
- Token cost
- ~729 tokens
- SKILL.md length
- 257 words
- Files
- 6
- Skills in repo
- 31
- Repo updated
- First seen
- Licence
- None found
At a glance
Query the STITCH chemical-protein interaction database. An agent skill from QSong-github/DrugClaw.
- The user asks about chemical-protein interactions
- SKILL.md covers API, Key Fields, Score Channels and Usage, plus 1 more section
- Runs Python scripts from its folder; reaches stitch.embl.de and string-db.org
- Drug-target binding
What it does
Stitch Query is an agent skill from QSong-github/DrugClaw. Query the STITCH chemical-protein interaction database. Use whenever the user asks about chemical-protein interactions, drug-target binding, compound action modes, or wants to look up any entity (chemical name, STITCH CID, STRING protein ID) in STITCH.
Its SKILL.md is about 730 tokens, which your agent loads only when the skill is triggered. The skill folder holds 5 other files (for example `README.md`, `__init__.py` and `example.py`).
It sits in Research & Science. The repository describes itself as: 🦀 Agentic RAG for drug intelligence · 57 skills · 15 task categories · DTI · ADR · DDI · PGx · Repurposing · Powered by LangGraph.
When your agent uses it
- The user asks about chemical-protein interactions
- Drug-target binding
- Compound action modes
- Wants to look up any entity (chemical name
Example prompts
- “/stitch-query”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit bc7b93e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
Hosts in commands or code, which the agent is likely to contact:
stitch.embl.destring-db.org
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Stitch Query loads about 729 tokens when it runs. Until then it costs about 66 tokens; SKILL.md has 257 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 257 words (~729 tokens).
“Search STITCH for chemical–protein interactions via REST API. Auto-detects input type:”
- name
- stitch-query
Files
SKILL.md and 5 other files in skills/dti/stitch of QSong-github/DrugClaw.
- SKILL.md
- README.md
- __init__.py
- example.py
- retrieve.py
- stitch_skill.py
Open the folder on GitHubat commit bc7b93e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in QSong-github/DrugClaw, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Stitch Query next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Stitch Query this skillQSong-github/DrugClaw | 116 | 1 repos | ~729 | Automated safety check: Pass | None | |
| Hypothesis Generationspacering-net/codeg | 3.8k | 15 repos | ~3.6k | Automated safety check: Notes | MIT | |
| GitHub Deep Researchbytedance/deer-flow | 83k | 5 repos | ~1.3k | Automated safety check: Pass | MIT | |
| Nature Paper CardYuan1z0825/nature-skills | 46k | 2 repos | ~2.1k | Automated safety check: Pass | Apache-2.0 | |
| Read arXiv Paperkarpathy/nanochat | 58k | 2 repos | ~494 | Automated safety check: Pass | MIT | |
| Content Research Writerweapp-tailwindcss/weapp-tailwindcss | 1.9k | 25 repos | ~3.5k | Automated safety check: Pass | MIT |
Similar skills
GitHub Deep Research
bytedance/deer-flow
Researches a GitHub repository over four rounds using the GitHub API and web search, then writes a structured markdown report with timeline, metrics and Mermaid diagrams.
Nature Paper Card
Yuan1z0825/nature-skills
Builds a structured deep-reading card for one scientific paper, covering methods, how experiments support claims, limitations and research ideas, with a script to prepare the source.
Read arXiv Paper
karpathy/nanochat
Fetches the TeX source of an arXiv paper from its URL, reads it and writes a markdown summary tied to the nanochat project.
Content Research Writer
weapp-tailwindcss/weapp-tailwindcss
Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section.
Peer Review
spacering-net/codeg
Structured manuscript/grant review with checklist-based evaluation.
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Related
Categories
Questions about Stitch Query
What does Stitch Query do?
Query the STITCH chemical-protein interaction database. An agent skill from QSong-github/DrugClaw. Stitch Query is an agent skill from QSong-github/DrugClaw. Query the STITCH chemical-protein interaction database.
When should I use Stitch Query?
Stitch Query fits situations like: the user asks about chemical-protein interactions; drug-target binding; compound action modes; wants to look up any entity (chemical name.
How do I install Stitch Query in Claude Code?
Run `npx skills add QSong-github/DrugClaw --skill stitch-query -a claude-code`. Or copy the skill folder (skills/dti/stitch in QSong-github/DrugClaw) into .claude/skills/stitch-query in your project. Claude Code loads it when a task matches its description.
How do I install Stitch Query in Codex?
Run `npx skills add QSong-github/DrugClaw --skill stitch-query -a codex`. Or copy the skill folder (skills/dti/stitch in QSong-github/DrugClaw) into .agents/skills/stitch-query in your project. Codex loads it when a task matches its description.
Can I use Stitch Query in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add QSong-github/DrugClaw --skill stitch-query -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/stitch-query, .gemini/skills/stitch-query, .github/skills/stitch-query and .opencode/skills/stitch-query in your project.
What does Stitch Query need to run?
Going by SKILL.md and its folder, Stitch Query needs Python for the scripts in its folder. Our summary lists: Python 3.
Does Stitch Query access the network?
SKILL.md names 2 domains. In commands or code: stitch.embl.de and string-db.org; the agent is likely to contact these when it follows the instructions. This is read from the text; nothing was executed.
Is Stitch Query safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Stitch Query use?
No licence was found for Stitch Query or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Stitch Query use?
About 729 tokens (SKILL.md is roughly 2.9k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Stitch Query?
Skills that share tags, products or a category with Stitch Query: Hypothesis Generation (spacering-net/codeg, 3.8k stars), GitHub Deep Research (bytedance/deer-flow, 83k stars), Nature Paper Card (Yuan1z0825/nature-skills, 46k stars) and Read arXiv Paper (karpathy/nanochat, 58k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Stitch Query?
QSong-github (a GitHub user) maintains it in QSong-github/DrugClaw, which has 116 GitHub stars. The repository holds 31 skills in this directory. The repository was last updated on August 25, 2026.
Source: QSong-github/DrugClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.