LLM Wiki Knowledge Graph
Egonex-AI/Understand-Anything
Detects a Karpathy-pattern LLM wiki and builds an interactive knowledge graph with entities, implicit relationships and topic clusters.
Query the PharmKG knowledge graph (180k entities, 39 relation types, 1M triples).
Install Pharmkg Query
$ npx skills add QSong-github/DrugClaw --skill pharmkg-query -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install QSong-github/DrugClaw pharmkg-query --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/drug_knowledgebase/pharmkg .claude/skills/pharmkg-query && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "pharmkg-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_knowledgebase/pharmkg into .claude/skills/pharmkg-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmkg-query", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_knowledgebase/pharmkgType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add QSong-github/DrugClaw --skill pharmkg-query -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install QSong-github/DrugClaw pharmkg-query --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/drug_knowledgebase/pharmkg .agents/skills/pharmkg-query && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "pharmkg-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_knowledgebase/pharmkg into .agents/skills/pharmkg-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmkg-query", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add QSong-github/DrugClaw --skill pharmkg-query -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install QSong-github/DrugClaw pharmkg-query --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/drug_knowledgebase/pharmkg .cursor/skills/pharmkg-query && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "pharmkg-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_knowledgebase/pharmkg into .cursor/skills/pharmkg-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmkg-query", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/QSong-github/DrugClaw.git --path skills/drug_knowledgebase/pharmkg--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add QSong-github/DrugClaw --skill pharmkg-query -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install QSong-github/DrugClaw pharmkg-query --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/drug_knowledgebase/pharmkg .gemini/skills/pharmkg-query && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "pharmkg-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_knowledgebase/pharmkg into .gemini/skills/pharmkg-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmkg-query", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install QSong-github/DrugClaw pharmkg-queryInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add QSong-github/DrugClaw --skill pharmkg-query -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/drug_knowledgebase/pharmkg .github/skills/pharmkg-query && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "pharmkg-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_knowledgebase/pharmkg into .github/skills/pharmkg-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmkg-query", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add QSong-github/DrugClaw --skill pharmkg-query -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install QSong-github/DrugClaw pharmkg-query --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/drug_knowledgebase/pharmkg .opencode/skills/pharmkg-query && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "pharmkg-query" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/drug_knowledgebase/pharmkg into .opencode/skills/pharmkg-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmkg-query", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
pharmkg-query- GitHub stars
- 116
- Used in
- 1 other repo
- Token cost
- ~517 tokens
- SKILL.md length
- 176 words
- Files
- 6
- Skills in repo
- 31
- Repo updated
- First seen
- Licence
- None found
At a glance
Query the PharmKG knowledge graph (180k entities, 39 relation types, 1M triples).
- The user asks about biomedical relationships among genes
- SKILL.md covers Entity & Relation Types, API, Usage and Data
- Runs Python scripts from its folder
- Drugs/chemicals
What it does
Pharmkg Query is an agent skill from QSong-github/DrugClaw. Query the PharmKG knowledge graph (180k entities, 39 relation types, 1M triples). Use whenever the user asks about biomedical relationships among genes, drugs/chemicals, and diseases — e.g. drug–gene interactions, drug–disease associations, gene–disease links, or drug–drug relationships derived from literature and curated databases.
Its SKILL.md is about 520 tokens, which your agent loads only when the skill is triggered. The skill folder holds 5 other files (for example `README.md`, `__init__.py` and `example.py`).
It sits in Knowledge Management, covering Knowledge graphs. The repository describes itself as: 🦀 Agentic RAG for drug intelligence · 57 skills · 15 task categories · DTI · ADR · DDI · PGx · Repurposing · Powered by LangGraph.
When your agent uses it
- The user asks about biomedical relationships among genes
- Drugs/chemicals
Example prompts
- “/pharmkg-query”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit bc7b93e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Pharmkg Query loads about 517 tokens when it runs. Until then it costs about 87 tokens; SKILL.md has 176 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 176 words (~517 tokens).
“Search PharmKG triples by entity name. Matching is case-insensitive; exact match is tried first via a prebuilt index, with substring fallback.”
- name
- pharmkg-query
Files
SKILL.md and 5 other files in skills/drug_knowledgebase/pharmkg of QSong-github/DrugClaw.
- SKILL.md
- README.md
- __init__.py
- example.py
- pharmkg_skill.py
- retrieve.py
Open the folder on GitHubat commit bc7b93e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in QSong-github/DrugClaw, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Pharmkg Query next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Pharmkg Query this skillQSong-github/DrugClaw | 116 | 1 repos | ~517 | Automated safety check: Pass | None | |
| LLM Wiki Knowledge GraphEgonex-AI/Understand-Anything | 85k | 1 repos | ~1.5k | Automated safety check: Pass | MIT | |
| Obsidian Canvas BoardsAgriciDaniel/claude-obsidian | 15k | — | ~1.4k | Automated safety check: Pass | MIT | |
| Ontology1mancompany/OneManCompany | 438 | 2 repos | ~1.5k | Automated safety check: Pass | Apache-2.0 | |
| Graphagenticnotetaking/arscontexta | 3.5k | 1 repos | ~4.9k | Automated safety check: Notes | MIT | |
| Knowledge Graphgnomeria/usbtree | 688 | — | ~1.5k | Automated safety check: Pass | MIT |
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Related
Categories
Questions about Pharmkg Query
What does Pharmkg Query do?
Query the PharmKG knowledge graph (180k entities, 39 relation types, 1M triples). Pharmkg Query is an agent skill from QSong-github/DrugClaw. Query the PharmKG knowledge graph (180k entities, 39 relation types, 1M triples).
When should I use Pharmkg Query?
Pharmkg Query fits situations like: the user asks about biomedical relationships among genes; drugs/chemicals.
How do I install Pharmkg Query in Claude Code?
Run `npx skills add QSong-github/DrugClaw --skill pharmkg-query -a claude-code`. Or copy the skill folder (skills/drug_knowledgebase/pharmkg in QSong-github/DrugClaw) into .claude/skills/pharmkg-query in your project. Claude Code loads it when a task matches its description.
How do I install Pharmkg Query in Codex?
Run `npx skills add QSong-github/DrugClaw --skill pharmkg-query -a codex`. Or copy the skill folder (skills/drug_knowledgebase/pharmkg in QSong-github/DrugClaw) into .agents/skills/pharmkg-query in your project. Codex loads it when a task matches its description.
Can I use Pharmkg Query in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add QSong-github/DrugClaw --skill pharmkg-query -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/pharmkg-query, .gemini/skills/pharmkg-query, .github/skills/pharmkg-query and .opencode/skills/pharmkg-query in your project.
What does Pharmkg Query need to run?
Going by SKILL.md and its folder, Pharmkg Query needs Python for the scripts in its folder. Our summary lists: Python 3.
Does Pharmkg Query access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Pharmkg Query safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Pharmkg Query use?
No licence was found for Pharmkg Query or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Pharmkg Query use?
About 517 tokens (SKILL.md is roughly 2.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Pharmkg Query?
Skills that share tags, products or a category with Pharmkg Query: LLM Wiki Knowledge Graph (Egonex-AI/Understand-Anything, 85k stars), Obsidian Canvas Boards (AgriciDaniel/claude-obsidian, 15k stars), Ontology (1mancompany/OneManCompany, 438 stars) and Graph (agenticnotetaking/arscontexta, 3.5k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Pharmkg Query?
QSong-github (a GitHub user) maintains it in QSong-github/DrugClaw, which has 116 GitHub stars. The repository holds 31 skills in this directory. The repository was last updated on August 25, 2026.
Source: QSong-github/DrugClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.