Clinpgx Database
davila7/claude-code-templates
Access ClinPGx pharmacogenomics data (successor to PharmGKB).
Query ClinPGx (PharmGKB) and CPIC for pharmacogenomics data.
No licenceAuto-check passed
Install Pharmgkb Clinpgx
$ npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install QSong-github/DrugClaw pharmgkb-clinpgx --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/pharmacogenomics/pharmgkb .claude/skills/pharmgkb-clinpgx && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "pharmgkb-clinpgx" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkb into .claude/skills/pharmgkb-clinpgx/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmgkb-clinpgx", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkbType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install QSong-github/DrugClaw pharmgkb-clinpgx --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/pharmacogenomics/pharmgkb .agents/skills/pharmgkb-clinpgx && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "pharmgkb-clinpgx" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkb into .agents/skills/pharmgkb-clinpgx/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmgkb-clinpgx", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install QSong-github/DrugClaw pharmgkb-clinpgx --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/pharmacogenomics/pharmgkb .cursor/skills/pharmgkb-clinpgx && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "pharmgkb-clinpgx" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkb into .cursor/skills/pharmgkb-clinpgx/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmgkb-clinpgx", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/QSong-github/DrugClaw.git --path skills/pharmacogenomics/pharmgkb--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install QSong-github/DrugClaw pharmgkb-clinpgx --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/pharmacogenomics/pharmgkb .gemini/skills/pharmgkb-clinpgx && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "pharmgkb-clinpgx" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkb into .gemini/skills/pharmgkb-clinpgx/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmgkb-clinpgx", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install QSong-github/DrugClaw pharmgkb-clinpgxInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/pharmacogenomics/pharmgkb .github/skills/pharmgkb-clinpgx && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "pharmgkb-clinpgx" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkb into .github/skills/pharmgkb-clinpgx/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmgkb-clinpgx", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install QSong-github/DrugClaw pharmgkb-clinpgx --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/QSong-github/DrugClaw.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/pharmacogenomics/pharmgkb .opencode/skills/pharmgkb-clinpgx && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "pharmgkb-clinpgx" agent skill from https://github.com/QSong-github/DrugClaw/tree/main/skills/pharmacogenomics/pharmgkb into .opencode/skills/pharmgkb-clinpgx/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "pharmgkb-clinpgx", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
pharmgkb-clinpgx- GitHub stars
- 116
- Used in
- 1 other repo
- Token cost
- ~641 tokens
- SKILL.md length
- 242 words
- Files
- 6
- Skills in repo
- 31
- Repo updated
- First seen
- Licence
- None found
At a glance
Query ClinPGx (PharmGKB) and CPIC for pharmacogenomics data.
- The user asks about gene-drug interactions
- SKILL.md covers API, Usage, Key Fields and Data Sources
- Runs Python scripts from its folder
- Pharmacogenomics clinical annotations
What it does
Pharmgkb Clinpgx is an agent skill from QSong-github/DrugClaw. Query ClinPGx (PharmGKB) and CPIC for pharmacogenomics data. Use whenever the user asks about gene-drug interactions, pharmacogenomics clinical annotations, drug-metabolizing enzymes, CPIC guidelines, or variant-level PGx evidence for any gene symbol, drug name, rsID, or ClinPGx accession.
Its SKILL.md is about 640 tokens, which your agent loads only when the skill is triggered. The skill folder holds 5 other files (for example `README.md`, `__init__.py` and `example.py`).
The repository describes itself as: 🦀 Agentic RAG for drug intelligence · 57 skills · 15 task categories · DTI · ADR · DDI · PGx · Repurposing · Powered by LangGraph.
When your agent uses it
- The user asks about gene-drug interactions
- Pharmacogenomics clinical annotations
- Drug-metabolizing enzymes
- CPIC guidelines
Example prompts
- “/pharmgkb-clinpgx”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit bc7b93e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
Links to these hosts (documentation or services it may open):
clinpgx.orgapi.cpicpgx.org
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Pharmgkb Clinpgx loads about 641 tokens when it runs. Until then it costs about 77 tokens; SKILL.md has 242 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 242 words (~641 tokens).
- name
- pharmgkb-clinpgx
Files
SKILL.md and 5 other files in skills/pharmacogenomics/pharmgkb of QSong-github/DrugClaw.
- SKILL.md
- README.md
- __init__.py
- example.py
- pharmgkb_skill.py
- retrieve.py
Open the folder on GitHubat commit bc7b93e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in QSong-github/DrugClaw, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Pharmgkb Clinpgx next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Pharmgkb Clinpgx this skillQSong-github/DrugClaw | 116 | 1 repos | ~641 | Automated safety check: Pass | None | |
| Clinpgx Databasedavila7/claude-code-templates | 32k | 12 repos | ~5.2k | Automated safety check: Pass | MIT | |
| ClinpgxClawBio/ClawBio | 1.2k | 3 repos | ~963 | Automated safety check: Pass | MIT | |
| Clinpgx Databaseaipoch/medical-research-skills | 2k | — | ~3k | Automated safety check: Pass | MIT | |
| Bio Clinical Databases PharmacogenomicsFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~1.9k | Automated safety check: Pass | None | |
| Clinpgx Databasejaechang-hits/SciAgent-Skills | 370 | 1 repos | ~7.2k | Automated safety check: Pass | CC-BY-SA-4.0 |
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Questions about Pharmgkb Clinpgx
What does Pharmgkb Clinpgx do?
Query ClinPGx (PharmGKB) and CPIC for pharmacogenomics data. Pharmgkb Clinpgx is an agent skill from QSong-github/DrugClaw. Query ClinPGx (PharmGKB) and CPIC for pharmacogenomics data.
When should I use Pharmgkb Clinpgx?
Pharmgkb Clinpgx fits situations like: the user asks about gene-drug interactions; pharmacogenomics clinical annotations; drug-metabolizing enzymes; CPIC guidelines.
How do I install Pharmgkb Clinpgx in Claude Code?
Run `npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a claude-code`. Or copy the skill folder (skills/pharmacogenomics/pharmgkb in QSong-github/DrugClaw) into .claude/skills/pharmgkb-clinpgx in your project. Claude Code loads it when a task matches its description.
How do I install Pharmgkb Clinpgx in Codex?
Run `npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a codex`. Or copy the skill folder (skills/pharmacogenomics/pharmgkb in QSong-github/DrugClaw) into .agents/skills/pharmgkb-clinpgx in your project. Codex loads it when a task matches its description.
Can I use Pharmgkb Clinpgx in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add QSong-github/DrugClaw --skill pharmgkb-clinpgx -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/pharmgkb-clinpgx, .gemini/skills/pharmgkb-clinpgx, .github/skills/pharmgkb-clinpgx and .opencode/skills/pharmgkb-clinpgx in your project.
What does Pharmgkb Clinpgx need to run?
Going by SKILL.md and its folder, Pharmgkb Clinpgx needs Python for the scripts in its folder. Our summary lists: Python 3.
Does Pharmgkb Clinpgx access the network?
SKILL.md names 2 domains. As links in the text: clinpgx.org and api.cpicpgx.org. This is read from the text; nothing was executed.
Is Pharmgkb Clinpgx safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Pharmgkb Clinpgx use?
No licence was found for Pharmgkb Clinpgx or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Pharmgkb Clinpgx use?
About 641 tokens (SKILL.md is roughly 2.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Pharmgkb Clinpgx?
Skills that share tags, products or a category with Pharmgkb Clinpgx: Clinpgx Database (davila7/claude-code-templates, 32k stars), Clinpgx (ClawBio/ClawBio, 1.2k stars), Clinpgx Database (aipoch/medical-research-skills, 2k stars) and Bio Clinical Databases Pharmacogenomics (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Pharmgkb Clinpgx?
QSong-github (a GitHub user) maintains it in QSong-github/DrugClaw, which has 116 GitHub stars. The repository holds 31 skills in this directory. The repository was last updated on August 25, 2026.
Source: QSong-github/DrugClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.