Complexa Design
NVIDIA-BioNeMo/bionemo-agent-toolkit
End-to-end Proteina-Complexa design pipeline driver. An agent skill from NVIDIA-BioNeMo/bionemo-agent-toolkit.
Scaffolds a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate.
Install New Analysis
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills new-analysis --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis .claude/skills/new-analysis && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "new-analysis" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis into .claude/skills/new-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "new-analysis", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysisType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills new-analysis --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis .agents/skills/new-analysis && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "new-analysis" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis into .agents/skills/new-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "new-analysis", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills new-analysis --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis .cursor/skills/new-analysis && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "new-analysis" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis into .cursor/skills/new-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "new-analysis", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git --path skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills new-analysis --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis .gemini/skills/new-analysis && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "new-analysis" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis into .gemini/skills/new-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "new-analysis", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills new-analysisInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis .github/skills/new-analysis && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "new-analysis" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis into .github/skills/new-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "new-analysis", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills new-analysis --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis .opencode/skills/new-analysis && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "new-analysis" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis into .opencode/skills/new-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "new-analysis", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
new-analysis- GitHub stars
- 4.5k
- Token cost
- ~764 tokens
- SKILL.md length
- 300 words
- Files
- 1
- Skills in repo
- 383
- Repo updated
- First seen
- Licence
- Custom licence
At a glance
Scaffolds a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate.
- Works in 7 steps: Parse the method from the arguments.… → Follow the same notebook creation… → Add method-specific sections as markdown… → …
- Starting a new econometric analysis
- SKILL.md covers Arguments and Steps
- Calls uv
What it does
New Analysis is an agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. Scaffolds a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate. Use when starting a new econometric analysis.
Its SKILL.md is about 760 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Project scaffolding and Econometrics and empirical research. The repository describes itself as: 🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库，覆盖8大社会科学学科的实证研究。CoPaper.AI…
When your agent uses it
- Starting a new econometric analysis
- Tasks that involve Project scaffolding
- Tasks that involve Econometrics and empirical research
Example prompts
- “Use the new-analysis skill to scaffold a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate”
- “/new-analysis”
Requirements
- Pre-approved tools (allowed-tools): Bash, Read, Write, Edit, Glob, Grep
Workflow steps
7 steps, taken from the first numbered list in SKILL.md.
- Parse the method from the arguments. Recognized methods
- Follow the same notebook creation conventions as /project:new-notebook
- Add method-specific sections as markdown and code cells
- Create the Jupytext .md pair
- Register in _quarto.yml under manuscript.notebooks
- Confirm the notebook renders: quarto render notebooks/.ipynb
- Report the file path and list the embed-ready cell labels created.
What it can do on your machine
Read from SKILL.md and the folder at commit 9fa87d8. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves these tools, so the agent can use them without asking each time:
BashReadWriteEditGlobGrep
From allowed-tools in the SKILL.md frontmatter.
Runs code
Shell commands in SKILL.md call:
uv
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use uv, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
New Analysis loads about 764 tokens when it runs. Until then it costs about 39 tokens; SKILL.md has 300 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check: notes
The automated check noted patterns worth knowing about, such as sudo or a known installer.
- NotePre-approves every shell command (allowed-tools: Bash)SKILL.md
allowed-tools: Bash, Read, Write, Edit, Glob, Grep
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Its licence (Custom licence) doesn't allow us to republish the file, so here is its outline and opening line. It has 300 words (~764 tokens).
“Create a new notebook pre-populated with method-specific boilerplate for a common econometric technique.”
- name
- new-analysis
- allowed-tools
- Bash, Read, Write, Edit, Glob, Grep
- argument-hint
- <method> [title]
Files
Just SKILL.md in skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis of brycewang-stanford/Auto-Empirical-Research-Skills.
Open the folder on GitHubat commit 9fa87d8
Compare with similar skills
New Analysis next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| New Analysis this skillbrycewang-stanford/Auto-Empirical-Research-Skills | 4.5k | — | ~764 | Automated safety check: Notes | Custom licence | |
| Complexa DesignNVIDIA-BioNeMo/bionemo-agent-toolkit | 478 | — | ~4.1k | Automated safety check: Notes | Custom licence | |
| Gtdscunning1975/MixtapeTools | 473 | — | ~2.9k | Automated safety check: Notes | None | |
| RfdiffusionPKU-YuanGroup/OpenAI4S | 620 | — | ~2.2k | Automated safety check: Pass | MIT | |
| Diagnosepedrohcgs/claude-code-my-workflow | 1.7k | — | ~4.2k | Automated safety check: Pass | MIT | |
| Scaffold Exercisespedrohcgs/claude-code-my-workflow | 1.7k | — | ~2k | Automated safety check: Notes | MIT |
Similar skills
Gtd
scunning1975/MixtapeTools
Warrant-first research GTD system. An agent skill from scunning1975/MixtapeTools.
Rfdiffusion
PKU-YuanGroup/OpenAI4S
Generate de novo protein backbones with RFdiffusion for protein-target binders, hotspot-conditioned interfaces, motif scaffolding, partial diffusion, or symmetric assemblies.
Diagnose
pedrohcgs/claude-code-my-workflow
Root-cause a failing or wrong empirical result with a disciplined reproduce → minimise → hypothesise → instrument → fix loop, instead of guessing-and-poking.
Scaffold Exercises
pedrohcgs/claude-code-my-workflow
Scaffold a graded problem set with sections, problems, worked solutions, and short "why this matters" explainers across analytical, empirical, and coding types.
Intake Project
Aperivue/medsci-skills
A skill your agent uses when starting or inheriting a radiology research project and need to know what it is.
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Related
Categories
Questions about New Analysis
What does New Analysis do?
Scaffolds a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate. New Analysis is an agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. Scaffolds a method-specific analysis notebook (DiD, IV, RDD, LASSO, Panel FE) with boilerplate.
When should I use New Analysis?
New Analysis fits situations like: starting a new econometric analysis; tasks that involve Project scaffolding; tasks that involve Econometrics and empirical research.
How do I install New Analysis in Claude Code?
Run `npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a claude-code`. Or copy the skill folder (skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis in brycewang-stanford/Auto-Empirical-Research-Skills) into .claude/skills/new-analysis in your project. Claude Code loads it when a task matches its description.
How do I install New Analysis in Codex?
Run `npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a codex`. Or copy the skill folder (skills/29-quarcs-lab-project20XXy/dot-claude/skills/new-analysis in brycewang-stanford/Auto-Empirical-Research-Skills) into .agents/skills/new-analysis in your project. Codex loads it when a task matches its description.
Can I use New Analysis in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill new-analysis -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/new-analysis, .gemini/skills/new-analysis, .github/skills/new-analysis and .opencode/skills/new-analysis in your project.
What does New Analysis need to run?
Going by SKILL.md and its folder, New Analysis needs the command-line tools its instructions call (uv). Its frontmatter pre-approves these tools: Bash, Read, Write, Edit, Glob, Grep.
Does New Analysis access the network?
SKILL.md contains no URLs. Its commands use uv, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is New Analysis safe to install?
Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. Review the folder before installing.
What licence does New Analysis use?
New Analysis has a licence file (the repository's licence) that doesn't match a standard licence. Read it on GitHub before reusing the skill.
How many tokens does New Analysis use?
About 764 tokens (SKILL.md is roughly 3.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to New Analysis?
Skills that share tags, products or a category with New Analysis: Complexa Design (NVIDIA-BioNeMo/bionemo-agent-toolkit, 478 stars), Gtd (scunning1975/MixtapeTools, 473 stars), Rfdiffusion (PKU-YuanGroup/OpenAI4S, 620 stars) and Diagnose (pedrohcgs/claude-code-my-workflow, 1.7k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains New Analysis?
brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Auto-Empirical-Research-Skills, which has 4,542 GitHub stars. The repository holds 383 skills in this directory. The repository was last updated on October 5, 2026.
Source: brycewang-stanford/Auto-Empirical-Research-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.