Patsnap Chemistry & Small Molecule MCP for AI agents. An agent skill from patsnap/mcp.
$ npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install patsnap/mcp patsnap-chemistry-small-molecule --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/patsnap/mcp.git skills-src && mkdir -p .claude/skills && cp -r skills-src/life-sciences/patsnap-chemistry-small-molecule .claude/skills/patsnap-chemistry-small-molecule && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "patsnap-chemistry-small-molecule" agent skill from https://github.com/patsnap/mcp/tree/main/life-sciences/patsnap-chemistry-small-molecule into .claude/skills/patsnap-chemistry-small-molecule/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "patsnap-chemistry-small-molecule", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/patsnap/mcp/tree/main/life-sciences/patsnap-chemistry-small-moleculeType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install patsnap/mcp patsnap-chemistry-small-molecule --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/patsnap/mcp.git skills-src && mkdir -p .agents/skills && cp -r skills-src/life-sciences/patsnap-chemistry-small-molecule .agents/skills/patsnap-chemistry-small-molecule && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "patsnap-chemistry-small-molecule" agent skill from https://github.com/patsnap/mcp/tree/main/life-sciences/patsnap-chemistry-small-molecule into .agents/skills/patsnap-chemistry-small-molecule/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "patsnap-chemistry-small-molecule", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install patsnap/mcp patsnap-chemistry-small-molecule --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/patsnap/mcp.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/life-sciences/patsnap-chemistry-small-molecule .cursor/skills/patsnap-chemistry-small-molecule && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "patsnap-chemistry-small-molecule" agent skill from https://github.com/patsnap/mcp/tree/main/life-sciences/patsnap-chemistry-small-molecule into .cursor/skills/patsnap-chemistry-small-molecule/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "patsnap-chemistry-small-molecule", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/patsnap/mcp.git --path life-sciences/patsnap-chemistry-small-molecule--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install patsnap/mcp patsnap-chemistry-small-molecule --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/patsnap/mcp.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/life-sciences/patsnap-chemistry-small-molecule .gemini/skills/patsnap-chemistry-small-molecule && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "patsnap-chemistry-small-molecule" agent skill from https://github.com/patsnap/mcp/tree/main/life-sciences/patsnap-chemistry-small-molecule into .gemini/skills/patsnap-chemistry-small-molecule/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "patsnap-chemistry-small-molecule", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install patsnap/mcp patsnap-chemistry-small-moleculeInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/patsnap/mcp.git skills-src && mkdir -p .github/skills && cp -r skills-src/life-sciences/patsnap-chemistry-small-molecule .github/skills/patsnap-chemistry-small-molecule && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "patsnap-chemistry-small-molecule" agent skill from https://github.com/patsnap/mcp/tree/main/life-sciences/patsnap-chemistry-small-molecule into .github/skills/patsnap-chemistry-small-molecule/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "patsnap-chemistry-small-molecule", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install patsnap/mcp patsnap-chemistry-small-molecule --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/patsnap/mcp.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/life-sciences/patsnap-chemistry-small-molecule .opencode/skills/patsnap-chemistry-small-molecule && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "patsnap-chemistry-small-molecule" agent skill from https://github.com/patsnap/mcp/tree/main/life-sciences/patsnap-chemistry-small-molecule into .opencode/skills/patsnap-chemistry-small-molecule/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "patsnap-chemistry-small-molecule", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
patsnap-chemistry-small-moleculePatsnap Chemistry & Small Molecule MCP for AI agents. An agent skill from patsnap/mcp.
Patsnap Chemistry Small Molecule is an agent skill from patsnap/mcp. Patsnap Chemistry & Small Molecule MCP for AI agents. Intelligent chemical small molecule analysis platform, covering chemical structure search, structure details analysis, and ADMET property prediction.
Its SKILL.md is about 640 tokens, which your agent loads only when the skill is triggered. The skill folder holds 2 other files (for example `README.md` and `package.json`).
It sits in Research & Science, covering Drug discovery and cheminformatics. It works with Model Context Protocol. The repository describes itself as: MCP server for 200M+ patents, scientific literature, chemistry and pharma records. Search prior art and R&D intelligence powered by PatSnap's proprietary databases via Claude… The licence is Apache-2.0.
4 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 7a4b429. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are json).
From the folder's file list and the shell code blocks in SKILL.md.
Hosts in commands or code, which the agent is likely to contact:
connect.patsnap.comAlso links to:
open.patsnap.comeureka.patsnap.comFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Patsnap Chemistry Small Molecule loads about 643 tokens when it runs. Until then it costs about 59 tokens; SKILL.md has 193 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from patsnap/mcp at commit 7a4b429, republished under its Apache-2.0 licence (© patsnap). 193 words, ~643 tokens.
.claude/skills/patsnap-chemistry-small-molecule/SKILL.md (or your agent's skills folder). This skill also uses 2 other files; get the full folder from GitHub.Get your API Key at https://open.patsnap.com
This skill connects your AI agent to Patsnap's Chemistry & Small Molecule MCP server — providing professional-grade life sciences intelligence.
Intelligent chemical small molecule analysis platform, covering chemical structure search, structure details analysis, and ADMET property prediction.
This skill requires the Patsnap Chemistry & Small Molecule MCP server to be configured in your environment:
{
"mcpServers": {
"chemistry_small_molecule": {
"url": "https://connect.patsnap.com/f71d33/logic-mcp?apikey=YOUR_API_KEY",
"type": "streamableHttp"
}
}
}Get your API key at open.patsnap.com. For the full list of available tools and input parameters, refer to the official MCP server documentation: https://open.patsnap.com/marketplace/mcp-servers/chemistry-small-molecule
When a user mentions a chemical name, drug, or SMILES string, resolve it to a standard structure or identifier.
Use structure_search for exact matches or similarity analogs. Fetch full details with structure_fetch.
Use admet_predict to evaluate drug-likeness and pharmacokinetic properties.
Present SMILES/InChI, scaffold descriptions, and tabular comparisons of analogs.
structure_search with a lead SMILES.structure_fetch.admet_predict to prioritize candidates.© patsnap, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 2 other files in life-sciences/patsnap-chemistry-small-molecule of patsnap/mcp.
Open the folder on GitHubat commit 7a4b429
Patsnap Chemistry Small Molecule next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Patsnap Chemistry Small Molecule this skillpatsnap/mcp | 113 | — | ~643 | Automated safety check: Pass | Apache-2.0 | |
| Hcls Build Agentaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~885 | Automated safety check: Pass | MIT-0 | |
| Tooluniverseynulihao/AgentSkillOS | 618 | 2 repos | ~2.5k | Automated safety check: Pass | None | |
| Hcls Get Startedaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~607 | Automated safety check: Pass | MIT-0 | |
| Chem Solution Mdlearningmatter-mit/AtomisticSkills | 176 | — | ~1.9k | Automated safety check: Pass | MIT | |
| Drug Ligand Preplearningmatter-mit/AtomisticSkills | 176 | — | ~772 | Automated safety check: Pass | MIT |
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with…
ynulihao/AgentSkillOS
A skill your agent uses when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when a developer asks how to get started building healthcare or life sciences agents, wants to understand the HCLS Agents Toolkit, or asks what's available in this repository.
learningmatter-mit/AtomisticSkills
Set up and run molecular dynamics simulations of molecules in explicit solvent boxes using Packmol for box construction and MLIPs for dynamics.
learningmatter-mit/AtomisticSkills
Prepare small-molecule ligands for docking and analysis via optional state enumeration, 3D conformer generation, MMFF/UFF minimization, and export to SDF + AutoDock PDBQT.
learningmatter-mit/AtomisticSkills
Compute RDKit physicochemical descriptors and rule-based drug-likeness heuristics (Ro5, Veber, QED) from SMILES.
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Works with
Categories
Patsnap Chemistry & Small Molecule MCP for AI agents. An agent skill from patsnap/mcp. Patsnap Chemistry Small Molecule is an agent skill from patsnap/mcp. Patsnap Chemistry & Small Molecule MCP for AI agents.
Patsnap Chemistry Small Molecule fits situations like: tasks that involve Drug discovery and cheminformatics.
Run `npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a claude-code`. Or copy the skill folder (life-sciences/patsnap-chemistry-small-molecule in patsnap/mcp) into .claude/skills/patsnap-chemistry-small-molecule in your project. Claude Code loads it when a task matches its description.
Run `npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a codex`. Or copy the skill folder (life-sciences/patsnap-chemistry-small-molecule in patsnap/mcp) into .agents/skills/patsnap-chemistry-small-molecule in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add patsnap/mcp --skill patsnap-chemistry-small-molecule -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/patsnap-chemistry-small-molecule, .gemini/skills/patsnap-chemistry-small-molecule, .github/skills/patsnap-chemistry-small-molecule and .opencode/skills/patsnap-chemistry-small-molecule in your project.
SKILL.md names no scripts, command-line tools or credentials: Patsnap Chemistry Small Molecule is instructions for the agent only. Our summary lists: A credential in YOUR_API_KEY.
SKILL.md names 3 domains. In commands or code: connect.patsnap.com; the agent is likely to contact it when it follows the instructions. As links in the text: open.patsnap.com and eureka.patsnap.com. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Patsnap Chemistry Small Molecule is published under the Apache-2.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 643 tokens (SKILL.md is roughly 2.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Patsnap Chemistry Small Molecule: Hcls Build Agent (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars), Tooluniverse (ynulihao/AgentSkillOS, 618 stars), Hcls Get Started (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars) and Chem Solution Md (learningmatter-mit/AtomisticSkills, 176 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
patsnap (a GitHub organization) maintains it in patsnap/mcp, which has 113 GitHub stars. The repository holds 32 skills in this directory. The repository was last updated on August 20, 2026.
Source: patsnap/mcp on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
