Codebase to Course
zarazhangrui/codebase-to-course
Turns a codebase into an interactive single-page HTML course for non-technical learners, with scroll modules, animated diagrams, quizzes and plain-English code translations.
Applies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text.
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install K-Dense-AI/scientific-agent-skills dhdna-profiler --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/dhdna-profiler .claude/skills/dhdna-profiler && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "dhdna-profiler" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/dhdna-profiler into .claude/skills/dhdna-profiler/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dhdna-profiler", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/dhdna-profilerType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install K-Dense-AI/scientific-agent-skills dhdna-profiler --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/dhdna-profiler .agents/skills/dhdna-profiler && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "dhdna-profiler" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/dhdna-profiler into .agents/skills/dhdna-profiler/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dhdna-profiler", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install K-Dense-AI/scientific-agent-skills dhdna-profiler --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/dhdna-profiler .cursor/skills/dhdna-profiler && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "dhdna-profiler" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/dhdna-profiler into .cursor/skills/dhdna-profiler/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dhdna-profiler", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/K-Dense-AI/scientific-agent-skills.git --path skills/dhdna-profiler--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install K-Dense-AI/scientific-agent-skills dhdna-profiler --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/dhdna-profiler .gemini/skills/dhdna-profiler && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "dhdna-profiler" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/dhdna-profiler into .gemini/skills/dhdna-profiler/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dhdna-profiler", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install K-Dense-AI/scientific-agent-skills dhdna-profilerInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/dhdna-profiler .github/skills/dhdna-profiler && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "dhdna-profiler" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/dhdna-profiler into .github/skills/dhdna-profiler/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dhdna-profiler", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install K-Dense-AI/scientific-agent-skills dhdna-profiler --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/dhdna-profiler .opencode/skills/dhdna-profiler && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "dhdna-profiler" agent skill from https://github.com/K-Dense-AI/scientific-agent-skills/tree/main/skills/dhdna-profiler into .opencode/skills/dhdna-profiler/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dhdna-profiler", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
dhdna-profilerApplies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text.
Dhdna Profiler is an agent skill from K-Dense-AI/scientific-agent-skills. Applies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text. Used for explicit requests for DHDNA, cognitive-style reflection, a thinking-pattern profile, or comparisons of textual reasoning. Scores describe evidence in the sample, not validated psychological traits or personal identity.
Its SKILL.md is about 2.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 2 other files, including reference files (for example `references/advanced-profiling.md`).
It sits in Education, covering Performance optimization and Quizzes and assessments. The repository describes itself as: Turn any AI agent into an AI Scientist. The 1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific… The licence is MIT.
5 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 92ace75. It shows what the files ask for, not the result of running them.
Pre-approves these tools, so the agent can use them without asking each time:
ReadWriteFrom allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Links to these hosts (documentation or services it may open):
ahkstrategies.netdoi.orgthemindbook.appFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Dhdna Profiler loads about 2.8k tokens when it runs, and up to ~3.9k if it reads all its reference files. Until then it costs about 87 tokens; SKILL.md has 1,350 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from K-Dense-AI/scientific-agent-skills at commit 92ace75, republished under its MIT licence (© K-Dense-AI). 1,350 words, ~2,841 tokens.
.claude/skills/dhdna-profiler/SKILL.md (or your agent's skills folder). This skill also uses 1 other file; get the full folder from GitHub.An exploratory rubric for describing a supplied text using Digital Human DNA (DHDNA) terminology. Its cognitive-fingerprint language is a framework metaphor; it does not establish a unique, stable, or identifiable psychological signature.
Use this workflow for requested reflection on writing. It requires no package, credentials, API call, or MindBook account. It does not reproduce MindBook's scoring engine.
The current publisher page names twelve public dimensions as a design vocabulary. The table below maps those names to the existing skill's annotation labels. The observation criteria and score anchors are local conventions, not an upstream validated scoring instrument.
The DHDNA preprint, DHDNA: A Framework for Ethical Digital Identity as Inheritable Heritage (February 23, 2026), states in section 6.3 that validation was limited to internal testing. The IDNA v2 preprint, Toward a Unified Theory of Digital Consciousness (February 27, 2026), proposes the tension pairs in section 4.3/Table 3 and the temporal-attractor model in section 2. Neither source establishes psychometric validity for this skill's annotations. A DOI, product demonstration, or journal submission is not evidence of such validity.
Describe observable reasoning and rhetorical choices. Genre, task, language proficiency, editing, collaboration, and AI assistance can change those choices. Do not infer intelligence, diagnosis, honesty, latent emotions, or a person's stable cognitive architecture from them.
| # | Skill label | Current publisher label | Evidence to describe in the sample |
|---|---|---|---|
| 1 | Analytical Depth | Reasoning style | Explicit premises, alternatives, causal arguments, and checks of conclusions |
| 2 | Creative Range | Creative synthesis | Connections, analogies, alternative framings; novelty needs a stated comparison context |
| 3 | Emotional Processing | Emotional architecture | Expressed affect and consideration of others' feelings; not inferred internal emotion |
| 4 | Linguistic Precision | Linguistic signature | Defined terms, clear references, and controlled ambiguity; simple prose can be precise |
| 5 | Ethical Reasoning | Ethical reasoning | Explicit values, affected parties, tradeoffs, and consequences; not moral character |
| 6 | Strategic Thinking | Strategic cognition | Stated goals, constraints, contingencies, and action sequences |
| 7 | Memory Integration | Memory topology | Use of past events or precedents; not memory capacity or historical truth |
| 8 | Social Intelligence | Social intelligence | Audience adaptation and represented perspectives; not actual interpersonal ability |
| 9 | Domain Expertise | Domain expertise | Relevant technical explanations and qualified claims; jargon alone is insufficient, accuracy needs independent checking |
| 10 | Intuitive Reasoning | Intuitive processing | Explicit reliance on impressions or heuristics; missing reasoning alone is not intuition |
| 11 | Temporal Orientation | Temporal awareness | Stated time horizons and links between past, present, and future |
| 12 | Metacognition | Metacognition | Explicit uncertainty, assumptions, limitations, and revision of reasoning |
The IDNA preprint proposes these pairings. They are prompts for comparison, not established negative correlations or complementary scales. Rate both independently; both may be high, low, or N/A. Do not derive one score by subtracting the other from ten.
| Pair | Compare the sample's evidence for |
|---|---|
| 1 and 10 | Analytical Depth and Intuitive Reasoning |
| 3 and 6 | Emotional Processing and Strategic Thinking |
| 2 and 5 | Creative Range and Ethical Reasoning |
| 4 and 12 | Linguistic Precision and Metacognition |
| 7 and 11 | Memory Integration and Temporal Orientation |
| 8 and 9 | Social Intelligence and Domain Expertise |
Use only the text designated for this request. Record a sample label, paragraph or line references, genre, purpose, language, and known editing context. Mark missing context unknown. Distinguish the author's assertions from quoted speech, fictional characters, and copied material; do not attribute all voices to the author.
If the user explicitly requests analysis of specified conversation turns, state that source scope and proceed. If the request leaves the source ambiguous, ask which text to use before expanding to earlier conversations or unrelated files.
For each dimension, identify specific quotations and how they support the observation. Include contrary evidence where present. Distinguish lack of expression from lack of opportunity to express it. Do not manufacture quotations or use a fictional narrator as evidence about the writer's personality.
Use qualitative observations by default. If numeric scoring is requested, use whole numbers on the local 1–10 rubric with these declared anchors:
Explain each numeric choice against the dimension's evidence criterion. These are ordinal judgments, not equal-interval measurements, percentiles, calibrated probabilities, or rankings of ability. Short samples may warrant only a few observations and many N/A entries. Do not force all scores or a dominant pattern.
Attach annotation confidence to each observation: HIGH for multiple unambiguous passages, MEDIUM for a clear but limited example, LOW for ambiguous evidence. Confidence concerns the textual interpretation, not a stable trait. If uncertainty prevents a defensible observation, use N/A instead of speculative scoring.
Identify two or three most evidenced dimensions only when the sample supports them. Discuss the six proposed pairings only where both sides have evidence. A numeric gap, if requested, is a difference between local annotations; it does not identify inner conflict or predict behavior.
Describe the argument structure with examples: a sequence of premises, revisiting an idea, connecting topics, or contrasting alternatives. Labels such as linear, spiral, web, dialectic, or fractal are optional metaphors; they are neither exhaustive categories nor a model of the author's mind.
Describe stated decision steps only when choices are actually discussed. The order of sentences cannot establish whether a person privately felt, reasoned, or decided first.
Verify every quotation against the sample, every observation against the cited passage, and every N/A against the available context. Check that the synthesis stays about the text. Return a profile in the conversation; export it only when requested.
Use this output template, including all twelve dimensions:
DHDNA TEXT PATTERN PROFILE
Sample: [label and source scope]
Context: [genre, purpose, language, editing context or unknown]
Method: [qualitative, or local ordinal 1–10 rubric]
Dimension | Observation | Score or N/A if requested | Confidence | Quote/location
[one row per dimension; missing evidence remains N/A]
Most evidenced patterns: [supported patterns, or insufficient evidence]
Proposed pair comparisons: [both sides supported, or not assessed]
Argument structure: [description with passage references]
Stated decision steps: [description, or not expressed]
Context and limitations: [alternative explanations and missing evidence]Synthetic sample, one paragraph:
We could repeat the measurement or replace the sensor. I favor repeating it because the control failed. If the control fails again, we will inspect the wiring. This explanation is tentative: temperature was not recorded.
A manual application supports Analytical Depth (alternatives and a reason), Strategic Thinking (a conditional next step), and Metacognition (a stated limitation). Emotional Processing and Memory Integration are N/A: this sample offers no suitable evidence for them. Intuitive Reasoning is N/A, not a low score inferred from the presence of analysis. Linguistic Precision can be discussed from the explicit referents and conditional wording. Domain accuracy remains unchecked; the paragraph does not establish the writer's expertise. There is insufficient material to characterize a stable thinking style or predict a choice.
This is an illustrative annotation, not a validated reference profile or a benchmark of rater agreement.
First compare genre, prompt, length, language, editing context, and opportunities to express each dimension. When these differ, describe the resulting sample differences without attributing them to authors. Compare evidence dimension by dimension; preserve N/A and avoid composite totals, average-person rankings, predicted compatibility, or imagined interpersonal conversations presented as findings.
For self-reflection, state which designated turns or samples were used. Conversational writing for an AI may differ from other writing. For repeated samples, keep the annotation protocol and context comparable and distinguish observed changes from changes in elicitation or rater judgment. See advanced profiling for genre lenses, longitudinal limits, and compact notation.
Original skill author: AHK Strategies. Related product: MindBook. These public links are references, not service integrations. The skill's MIT license does not relicense the linked research or product.
© K-Dense-AI, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 1 other file (references) in skills/dhdna-profiler of K-Dense-AI/scientific-agent-skills.
Open the folder on GitHubat commit 92ace75
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in K-Dense-AI/scientific-agent-skills, which our catalogue first saw on October 7, 2026.
Dhdna Profiler next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Dhdna Profiler this skillK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~2.8k | Automated safety check: Pass | MIT | |
| Codebase to Coursezarazhangrui/codebase-to-course | 5.7k | — | ~4.4k | Automated safety check: Pass | None | |
| Auto Improvecrimeacs/auto-improve | 135 | — | ~651 | Automated safety check: Pass | MIT | |
| Create Skill Testdotnet/skills | 5.6k | 1 repos | ~6.1k | Automated safety check: Pass | MIT | |
| Skill Doctoralirezarezvani/claude-skills | 28k | — | ~1.5k | Automated safety check: Pass | MIT | |
| Comment Judgefmflurry/settings-opencode | 171 | — | ~2.5k | Automated safety check: Pass | MIT |
zarazhangrui/codebase-to-course
Turns a codebase into an interactive single-page HTML course for non-technical learners, with scroll modules, animated diagrams, quizzes and plain-English code translations.
crimeacs/auto-improve
GAN-style iterative improvement loop for any text artifact. An agent skill from crimeacs/auto-improve.
dotnet/skills
Scaffolds eval.yaml evaluation specs for skills, custom agents, and redistributable gh-aw workflow packages in the dotnet/skills repository.
alirezarezvani/claude-skills
A skill your agent uses when the user wants their agent setup graded from real conversation history, asks which installed skills are actually working, or wants evidence-backed skill edits — scores…
fmflurry/settings-opencode
LLM-as-a-judge rubric for code comments (forbidden, false, stale, narration, noise, keep).
malloydata/publisher
Malloy semantic-model code review. An agent skill from malloydata/publisher.
K-Dense-AI/scientific-agent-skills
Estimates reaction fluxes inside cells from steady-state carbon-13 labeling data with a bundled mfapy-based solver, and reports which fluxes the data pin down.
K-Dense-AI/scientific-agent-skills
Plans, runs, and documents analytical method validation, verification, or transfer studies under ICH Q2(R2)/Q14, USP, ICH M10, CLSI EP, or ISO/IEC 17025.
K-Dense-AI/scientific-agent-skills
Runs Cantera constant-volume or constant-pressure ignition simulations and reports temperature-based ignition delay with mechanism provenance and checks.
K-Dense-AI/scientific-agent-skills
Predicts how small molecules bind to a protein with DiffDock, covering batch docking, pose ranking by confidence and checks on the results; not for binding affinity.
K-Dense-AI/scientific-agent-skills
Plans and audits runs of the HypoGeniC and HypoRefine packages, which propose hypotheses from labeled text datasets, with local checks before any model call.
K-Dense-AI/scientific-agent-skills
Organizes scope, controlled documents, risk files and traceability into draft evidence for human review against ISO 13485, 14971, 17025 and 15189.
Categories
Applies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text. Dhdna Profiler is an agent skill from K-Dense-AI/scientific-agent-skills. Applies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text.
Dhdna Profiler fits situations like: tasks that involve Performance optimization; tasks that involve Quizzes and assessments.
Run `npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a claude-code`. Or copy the skill folder (skills/dhdna-profiler in K-Dense-AI/scientific-agent-skills) into .claude/skills/dhdna-profiler in your project. Claude Code loads it when a task matches its description.
Run `npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a codex`. Or copy the skill folder (skills/dhdna-profiler in K-Dense-AI/scientific-agent-skills) into .agents/skills/dhdna-profiler in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add K-Dense-AI/scientific-agent-skills --skill dhdna-profiler -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/dhdna-profiler, .gemini/skills/dhdna-profiler, .github/skills/dhdna-profiler and .opencode/skills/dhdna-profiler in your project.
SKILL.md names no scripts, command-line tools or credentials: Dhdna Profiler is instructions for the agent only. Its frontmatter pre-approves these tools: Read, Write.
SKILL.md names 3 domains. As links in the text: ahkstrategies.net, doi.org and themindbook.app. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Dhdna Profiler is published under the MIT licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.
About 2.8k tokens (SKILL.md is roughly 11k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 1.1k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Dhdna Profiler: Codebase to Course (zarazhangrui/codebase-to-course, 5.7k stars), Auto Improve (crimeacs/auto-improve, 135 stars), Create Skill Test (dotnet/skills, 5.6k stars) and Skill Doctor (alirezarezvani/claude-skills, 28k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
K-Dense-AI (a GitHub organization) maintains it in K-Dense-AI/scientific-agent-skills, which has 48,215 GitHub stars. The repository holds 153 skills in this directory. The repository was last updated on October 5, 2026.
Source: K-Dense-AI/scientific-agent-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.