Bio Spatial Transcriptomics Spatial Statistics
FreedomIntelligence/OpenClaw-Medical-Skills
Compute spatial statistics for spatial transcriptomics data using Squidpy.
Agent skill
by hashgraph-online in hashgraph-online/awesome-codex-plugins
A skill your agent uses when deciding whether (and how) to borrow physical-world wayfinding metaphors for software — rooms, doors, paths, maps, landmarks.
$ npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install hashgraph-online/awesome-codex-plugins wayfinding-physical-spatial-metaphors --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/hashgraph-online/awesome-codex-plugins.git skills-src && mkdir -p .claude/skills && cp -r skills-src/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors .claude/skills/wayfinding-physical-spatial-metaphors && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "wayfinding-physical-spatial-metaphors" agent skill from https://github.com/hashgraph-online/awesome-codex-plugins/tree/main/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors into .claude/skills/wayfinding-physical-spatial-metaphors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wayfinding-physical-spatial-metaphors", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/hashgraph-online/awesome-codex-plugins/tree/main/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphorsType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install hashgraph-online/awesome-codex-plugins wayfinding-physical-spatial-metaphors --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/hashgraph-online/awesome-codex-plugins.git skills-src && mkdir -p .agents/skills && cp -r skills-src/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors .agents/skills/wayfinding-physical-spatial-metaphors && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "wayfinding-physical-spatial-metaphors" agent skill from https://github.com/hashgraph-online/awesome-codex-plugins/tree/main/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors into .agents/skills/wayfinding-physical-spatial-metaphors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wayfinding-physical-spatial-metaphors", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install hashgraph-online/awesome-codex-plugins wayfinding-physical-spatial-metaphors --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/hashgraph-online/awesome-codex-plugins.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors .cursor/skills/wayfinding-physical-spatial-metaphors && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "wayfinding-physical-spatial-metaphors" agent skill from https://github.com/hashgraph-online/awesome-codex-plugins/tree/main/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors into .cursor/skills/wayfinding-physical-spatial-metaphors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wayfinding-physical-spatial-metaphors", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/hashgraph-online/awesome-codex-plugins.git --path plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install hashgraph-online/awesome-codex-plugins wayfinding-physical-spatial-metaphors --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/hashgraph-online/awesome-codex-plugins.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors .gemini/skills/wayfinding-physical-spatial-metaphors && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "wayfinding-physical-spatial-metaphors" agent skill from https://github.com/hashgraph-online/awesome-codex-plugins/tree/main/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors into .gemini/skills/wayfinding-physical-spatial-metaphors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wayfinding-physical-spatial-metaphors", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install hashgraph-online/awesome-codex-plugins wayfinding-physical-spatial-metaphorsInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/hashgraph-online/awesome-codex-plugins.git skills-src && mkdir -p .github/skills && cp -r skills-src/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors .github/skills/wayfinding-physical-spatial-metaphors && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "wayfinding-physical-spatial-metaphors" agent skill from https://github.com/hashgraph-online/awesome-codex-plugins/tree/main/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors into .github/skills/wayfinding-physical-spatial-metaphors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wayfinding-physical-spatial-metaphors", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install hashgraph-online/awesome-codex-plugins wayfinding-physical-spatial-metaphors --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/hashgraph-online/awesome-codex-plugins.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors .opencode/skills/wayfinding-physical-spatial-metaphors && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "wayfinding-physical-spatial-metaphors" agent skill from https://github.com/hashgraph-online/awesome-codex-plugins/tree/main/plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors into .opencode/skills/wayfinding-physical-spatial-metaphors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wayfinding-physical-spatial-metaphors", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
wayfinding-physical-spatial-metaphorsA skill your agent uses when deciding whether (and how) to borrow physical-world wayfinding metaphors for software — rooms, doors, paths, maps, landmarks.
Wayfinding Physical Spatial Metaphors is an agent skill from hashgraph-online/awesome-codex-plugins. Use this skill when deciding whether (and how) to borrow physical-world wayfinding metaphors for software — rooms, doors, paths, maps, landmarks. Trigger when designing app shells with multiple "spaces," when picking metaphors for navigation (workspace, channel, board, project), when reviewing skeuomorphic vs. flat navigation choices, or when the user mentions "feels like a maze" or "where's the front door of this app." Sub-aspect of wayfinding; read that first.
Its SKILL.md is about 2.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 2 other files, including reference files (for example `references/metaphor-cases.md`).
The repository describes itself as: A curated list of awesome OpenAI Codex / ChatGPT plugins, skills, and resources. The 1 Codex Marketplace. See live plugins at: https://hol.org/plugins/best-codex-plugins. The licence is Apache-2.0.
3 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 3e1456a. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Wayfinding Physical Spatial Metaphors loads about 2.1k tokens when it runs, and up to ~3.8k if it reads all its reference files. Until then it costs about 127 tokens; SKILL.md has 1,082 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from hashgraph-online/awesome-codex-plugins at commit 3e1456a, republished under its Apache-2.0 licence (© hashgraph-online). 1,082 words, ~2,081 tokens.
.claude/skills/wayfinding-physical-spatial-metaphors/SKILL.md (or your agent's skills folder). This skill also uses 1 other file; get the full folder from GitHub.Software navigation borrows from physical-world wayfinding all the time — sometimes deliberately, often by accident. "Folders" mimic filing cabinets; "rooms" and "channels" mimic conference rooms; "boards" and "lists" mimic whiteboards; "drilling down" and "zooming out" are spatial verbs. Used well, these metaphors give users an instant cognitive map. Used carelessly, they create expectations the software can't meet.
The metaphor must satisfy three conditions to be net-positive:
When all three hold, the metaphor offloads cognitive work to the user's existing model.
Slack channels, Discord servers, Notion workspaces, Microsoft Teams. The metaphor: a named container with members and a context. Each room has its own conversations and norms.
Wayfinding implications:
Trello, Linear, Asana boards. The metaphor: a flat surface (board) with regions (lanes/columns) and movable items (cards). Maps to whiteboards, post-it walls, kanban systems.
Wayfinding implications:
The original spatial metaphor: file systems. Folders within folders within folders.
Wayfinding implications:
The trap: deep hierarchies are easier to create than to navigate. Wayfinding research consistently finds that 4+ levels of depth become frustrating; users prefer broader, shallower structures.
Figma, Miro, FigJam. The metaphor: an infinite 2D plane that the user pans and zooms across.
Wayfinding implications:
Card-stack metaphors (Stories on Instagram, swipeable decks). The metaphor: a stack of cards consumed sequentially.
Wayfinding implications:
Museums have used spatial metaphors for centuries: rooms grouped by period, by region, by artist. Visitors orient by which "room" they're in. Modern museum apps mirror this — the audio tour app shows you which room corresponds to your current location, and tapping a room reveals its contents.
The lesson: when the physical space is well-organized, the digital equivalent inherits that organization for free.
Cities organized on grids (Manhattan, parts of Tokyo) are easier to wayfind than organic-grown cities (Boston, Lisbon, much of London). Grid metaphors translate to software well: a settings page laid out as a grid of categories (Profile, Notifications, Security, Billing) is easier to navigate than one organized by some idiosyncratic logic.
When your IA naturally has a grid-like structure, expose it. When it has an organic structure, lean into landmarks.
The flat-design movement (post-2013) rejected literal skeuomorphism (leather-bound calendars, felt poker tables). What survived: spatial intuitions without literal visual mimicry. Sliding panels still feel like opening drawers; cards still feel like tangible objects. The visual style went flat; the spatial metaphors stayed.
The current trend (post-2020) is "neo-skeuomorphism" — subtle depth cues, careful shadows, motion that respects spatial logic. The principle: borrow the physics, not the textures.
wayfinding (parent) — the principle and four-stage framework.wayfinding-search-and-recovery — when spatial metaphors fail, search recovers.wayfinding-breadcrumbs-and-context — making the "where am I" answer load-bearing.mental-model — physical metaphors work because they leverage existing mental models.mimicry — the broader principle of borrowing successful patterns.© hashgraph-online, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 1 other file (references) in plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors of hashgraph-online/awesome-codex-plugins.
Open the folder on GitHubat commit 3e1456a
Wayfinding Physical Spatial Metaphors next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Wayfinding Physical Spatial Metaphors this skillhashgraph-online/awesome-codex-plugins | 1.3k | — | ~2.1k | Automated safety check: Pass | Apache-2.0 | |
| Bio Spatial Transcriptomics Spatial StatisticsFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.8k | Automated safety check: Pass | None | |
| Bio Spatial Transcriptomics Spatial NeighborsFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.6k | Automated safety check: Pass | None | |
| Bio Spatial Transcriptomics Spatial DomainsFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~2.1k | Automated safety check: Pass | None | |
| Metaphor AutomationComposioHQ/awesome-claude-skills | 77k | 3 repos | ~734 | Automated safety check: Pass | None | |
| Physical Addressthedaviddias/Front-End-Checklist | 74k | — | ~574 | Automated safety check: Pass | MIT |
FreedomIntelligence/OpenClaw-Medical-Skills
Compute spatial statistics for spatial transcriptomics data using Squidpy.
FreedomIntelligence/OpenClaw-Medical-Skills
Build spatial neighbor graphs for spatial transcriptomics data using Squidpy.
FreedomIntelligence/OpenClaw-Medical-Skills
Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy.
ComposioHQ/awesome-claude-skills
Automate Metaphor tasks via Rube MCP (Composio). An agent skill from ComposioHQ/awesome-claude-skills.
thedaviddias/Front-End-Checklist
A skill your agent uses when auditing local business websites, e-commerce sites, or any site where a physical presence affects trust or local search visibility.
FreedomIntelligence/OpenClaw-Medical-Skills
Visualize spatial transcriptomics data using Squidpy and Scanpy.
hashgraph-online/awesome-codex-plugins
Create original anime-style reaction stickers as looping GIFs and MP4 previews, using generated character pose sheets and timed key poses.
hashgraph-online/awesome-codex-plugins
Manage and query Calibre libraries with the calibredb CLI (local paths or Calibre Content server URLs).
hashgraph-online/awesome-codex-plugins
A skill your agent uses when adding, changing, testing, or debugging Rust HTTP APIs and services, especially when Codex needs black-box integration tests, random-port app startup, real database test…
hashgraph-online/awesome-codex-plugins
Make a studio's game look like something at build time — a cover from a real frame of the game (free), painted covers, backdrops, textures and character plates from image models through the…
hashgraph-online/awesome-codex-plugins
Use CALL-E from Codex through the calle CLI. An agent skill from hashgraph-online/awesome-codex-plugins.
hashgraph-online/awesome-codex-plugins
Balance game difficulty, resources, rewards, probability, progression, economies, and dominant strategies.
A skill your agent uses when deciding whether (and how) to borrow physical-world wayfinding metaphors for software — rooms, doors, paths, maps, landmarks. Wayfinding Physical Spatial Metaphors is an agent skill from hashgraph-online/awesome-codex-plugins. Use this skill when deciding whether (and how) to borrow physical-world wayfinding metaphors for software — rooms, doors, paths, maps, landmarks.
Wayfinding Physical Spatial Metaphors fits situations like: deciding whether (and how) to borrow physical-world wayfinding metaphors for software — rooms; designing app shells with multiple spaces; picking metaphors for navigation (workspace; reviewing skeuomorphic vs.
Run `npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a claude-code`. Or copy the skill folder (plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors in hashgraph-online/awesome-codex-plugins) into .claude/skills/wayfinding-physical-spatial-metaphors in your project. Claude Code loads it when a task matches its description.
Run `npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a codex`. Or copy the skill folder (plugins/HDeibler/universal-design-principles/plugins/cognition-and-learnability-principles/skills/wayfinding-physical-spatial-metaphors in hashgraph-online/awesome-codex-plugins) into .agents/skills/wayfinding-physical-spatial-metaphors in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add hashgraph-online/awesome-codex-plugins --skill wayfinding-physical-spatial-metaphors -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/wayfinding-physical-spatial-metaphors, .gemini/skills/wayfinding-physical-spatial-metaphors, .github/skills/wayfinding-physical-spatial-metaphors and .opencode/skills/wayfinding-physical-spatial-metaphors in your project.
SKILL.md names no scripts, command-line tools or credentials: Wayfinding Physical Spatial Metaphors is instructions for the agent only.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Wayfinding Physical Spatial Metaphors is published under the Apache-2.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 2.1k tokens (SKILL.md is roughly 8.3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 1.7k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Wayfinding Physical Spatial Metaphors: Bio Spatial Transcriptomics Spatial Statistics (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars), Bio Spatial Transcriptomics Spatial Neighbors (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars), Bio Spatial Transcriptomics Spatial Domains (FreedomIntelligence/OpenClaw-Medical-Skills, 3.1k stars) and Metaphor Automation (ComposioHQ/awesome-claude-skills, 77k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
hashgraph-online (a GitHub organization) maintains it in hashgraph-online/awesome-codex-plugins, which has 1,267 GitHub stars. The repository holds 716 skills in this directory. The repository was last updated on October 10, 2026.
Source: hashgraph-online/awesome-codex-plugins on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.