Sciatlas Idea Evaluate
zjunlp/SciAtlas
Use only the current SciAtlas automated review workflow (reviewpipeline) to take a novice user from zero setup to a final automated review of a research idea or paper, including setup, registration…
A skill your agent uses when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade.
$ npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install gaasher/Agent-Loop-Skills research-proposal --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/gaasher/Agent-Loop-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/loops/research-proposal .claude/skills/research-proposal && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "research-proposal" agent skill from https://github.com/gaasher/Agent-Loop-Skills/tree/main/loops/research-proposal into .claude/skills/research-proposal/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-proposal", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/gaasher/Agent-Loop-Skills/tree/main/loops/research-proposalType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install gaasher/Agent-Loop-Skills research-proposal --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/gaasher/Agent-Loop-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/loops/research-proposal .agents/skills/research-proposal && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "research-proposal" agent skill from https://github.com/gaasher/Agent-Loop-Skills/tree/main/loops/research-proposal into .agents/skills/research-proposal/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-proposal", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install gaasher/Agent-Loop-Skills research-proposal --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/gaasher/Agent-Loop-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/loops/research-proposal .cursor/skills/research-proposal && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "research-proposal" agent skill from https://github.com/gaasher/Agent-Loop-Skills/tree/main/loops/research-proposal into .cursor/skills/research-proposal/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-proposal", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/gaasher/Agent-Loop-Skills.git --path loops/research-proposal--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install gaasher/Agent-Loop-Skills research-proposal --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/gaasher/Agent-Loop-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/loops/research-proposal .gemini/skills/research-proposal && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "research-proposal" agent skill from https://github.com/gaasher/Agent-Loop-Skills/tree/main/loops/research-proposal into .gemini/skills/research-proposal/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-proposal", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install gaasher/Agent-Loop-Skills research-proposalInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/gaasher/Agent-Loop-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/loops/research-proposal .github/skills/research-proposal && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "research-proposal" agent skill from https://github.com/gaasher/Agent-Loop-Skills/tree/main/loops/research-proposal into .github/skills/research-proposal/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-proposal", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install gaasher/Agent-Loop-Skills research-proposal --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/gaasher/Agent-Loop-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/loops/research-proposal .opencode/skills/research-proposal && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "research-proposal" agent skill from https://github.com/gaasher/Agent-Loop-Skills/tree/main/loops/research-proposal into .opencode/skills/research-proposal/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-proposal", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
research-proposalA skill your agent uses when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade.
Research Proposal is an agent skill from gaasher/Agent-Loop-Skills. Use when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade. ScholarEval grades the proposal against the literature (Soundness + Contribution), a Judge scores that feedback 0-100 on a fixed rubric, and a Reviser rewrites the proposal to fix the worst points without diluting the research question; loops until the grade passes or the budget is hit. Not for generating a proposal from scratch, and not for…
Its SKILL.md is about 2.5k tokens, which your agent loads only when the skill is triggered. The skill folder holds 11 other files (for example `examples/run.example.yaml`, `roles/Judge.md` and `roles/Reviser.md`). Compatibility notes: Requires Python 3.9+
It sits in Education, covering Quizzes and assessments and Hypothesis generation. The repository describes itself as: Loop until it's better — drop-in agentic loops (autoresearch, scientific writing, data analysis, code/SQL/prompt optimization, red-teaming) as open-standard Agent Skills… The licence is MIT.
Read from SKILL.md and the folder at commit f1169e6. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names these keys or tokens, usually read from environment variables:
S2_API_KEYFrom names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Requires Python 3.9+
From compatibility in the SKILL.md frontmatter.
Research Proposal loads about 2.5k tokens when it runs. Until then it costs about 142 tokens; SKILL.md has 1,071 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from gaasher/Agent-Loop-Skills at commit f1169e6, republished under its MIT licence (© gaasher). 1,071 words, ~2,460 tokens.
.claude/skills/research-proposal/SKILL.md (or your agent's skills folder). This skill also uses 7 other files; get the full folder from GitHub.The artifact is a research proposal; the feedback signal is ScholarEval (literature-grounded
Soundness + Contribution) turned into a 0-100 grade by a Judge against the fixed rubric.md.
Each iteration evaluates → grades → revises until the grade clears <pass_threshold> or the
budget runs out.
North star. Clearing the threshold is the stopping condition, not the goal. The goal is the strongest, most novel, genuinely publishable version the proposal can honestly become — every revision should ask "does this make the work more significant and more novel?", not just "does this patch a flaw?". This is grounded ambition: the lift comes from better-justified methods, a sharper-but-defensible novelty claim, and stronger baselines, all backed by real retrieved evidence. Overclaiming lowers the grade (evidence gate + Contribution axis); it never raises it.
The cast (all in this folder):
roles/ScholarEval.md — the two-module literature-grounded evaluator; emits scholareval.json.roles/Judge.md — grades the feedback → 0-100 + ranked fixes; emits verdict.json (decides pass).roles/Reviser.md — rewrites the proposal to address the fixes (guards the research intent).rubrics/rubric.md — the fixed grading rubric (the Judge never edits it).schemas/scholareval.schema.json, schemas/verdict.schema.json — the two validated outputs.Spawn-or-degrade. On Claude Code, spawn ScholarEval / Reviser as real Agent subagents;
otherwise adopt each role inline. You are the orchestrator and the Judge.
Use when a written proposal exists and the user wants it pushed past a quality bar with literature-grounded critique. Default: run the full evaluate→grade→revise loop below. Escape hatch: if the user only wants the critique (no rewriting), run one ScholarEval + Judge pass and stop. Not for writing a proposal from a blank page, and not for a standalone literature survey.
Resolve bindings interactively. If loop.run.yaml exists in the working dir, load it and skip to
the loop. Otherwise: on Claude Code (the AskUserQuestion tool is available) infer a likely value for
each binding and present it as the recommended option; on other hosts ask each as a quoted plain-text
prompt. Then write loop.run.yaml (format: examples/run.example.yaml) and confirm every value,
<intent>, and the live/degraded literature tier before creating any other files.
| binding | meaning | default | how to infer |
|---|---|---|---|
<proposal_path> | file with problem + methodology + planned experiments | — | scan for a likely .md/.txt/.pdf; if only prose is pasted, save it to <sandbox_root>/iter1/proposal.md |
<intent> | core research question + headline contribution, 2-3 sentences — frozen; the Reviser may never change it | — | read the proposal, extract it, have the user confirm |
<pass_threshold> | grade (0-100) the proposal must reach to pass | 75 | a solid, well-grounded proposal without demanding perfection |
<budget> | max iterations | 6 | — |
<patience> | stop after this many consecutive no-improvement iterations | 2 | — |
<eval_scale> | how much literature ScholarEval pulls per iteration (low/medium/high, see below) | medium | — |
grade_weights | soundness · contribution · evidence_quality (must sum to 1; frozen for the run) | 0.45 · 0.35 · 0.20 | rubric.md; recommend default |
<sandbox_root> | where snapshots, ledger, and lit cache live | ./sandbox | — |
Evaluation depth dial (<eval_scale> caps per iteration — methods · dimensions examined ·
queries each · papers read full-text):
| preset | methods · dims | queries each | fulltext reads | effort |
|---|---|---|---|---|
| low | 2 · 2 | 1 | 0 (snippet/abstract only) | low |
| medium (recommended) | 4 · 3 | 2 | 2 | medium |
| high | 6 · 5 | 3 | 5 | high |
Literature toolchain. Paper search goes through the sibling literature-search skill —
resolve <lit_skill_dir> (it installs as a sibling, e.g. ~/.claude/skills/literature-search/),
<lit_py> = python3, and <lit> = <lit_skill_dir>/tools/lit_search.py; append
--cache-dir <sandbox_root>/literature/.cache after a subcommand to reuse the cache. Confirm
<lit> --help works at setup; if the skill is absent, tell the user and either install it
(copy the repo's loops/literature-search folder into ~/.claude/skills/) or degrade all retrieval to WebSearch/WebFetch
(no ranked snippets or citation-graph expansion). The keyless S2 + arXiv core
(search/snippet/cite/fulltext) needs no setup; a free S2_API_KEY makes snippet+cite
(ScholarEval's two defining moves) reliable.
API key (optional, never block). The literature-search skill owns the key convention: run
<lit> keys --init, then have the user fill the printed keys.env themselves and never paste secrets
into chat. Re-run <lit> keys to confirm presence and record the tier in loop.run.yaml
(literature_tiers, presence only). A missing key just degrades to the keyless pool → WebSearch.
Initialise the sandbox once bindings are confirmed:
<sandbox_root>/
├── loop.run.yaml ← resolved bindings + <intent> + grade_weights + literature_tiers
├── ledger.tsv ← header only (see Ledger)
├── literature/.cache/ ← lit_search on-disk cache
└── iter1/proposal.md ← the input proposal (the baseline)<N> starts at 1; iteration 1 evaluates the unmodified proposal (the baseline grade — no
revision before it). Re-evaluate fresh every iteration: the grade comes only from a new ScholarEval
pass on the revised proposal, never carried over.
Copy this checklist and tick items off:
roles/ScholarEval.md (spawn-or-degrade) on iter<N>/proposal.md with the <eval_scale> caps and <lit>; it writes iter<N>/scholareval.json (validates against schemas/scholareval.schema.json).roles/Judge.md) apply rubrics/rubric.md to scholareval.json: evidence gate → 0-5 per axis → weighted grade → hard gates → pass + ranked fixes; write iter<N>/verdict.json (validates against schemas/verdict.schema.json).ledger.tsv row (see Ledger).verdict.pass == true, or N == <budget>, or grade flat for <patience> iterations → stop (see Stops).roles/Reviser.md (spawn-or-degrade) with verdict.json, scholareval.json, <intent>, <lit>, and a small revision search budget (≈<eval_scale> searches + a couple of reads); it applies one focused fix batch and writes iter<N+1>/proposal.md + iter<N+1>/revision_notes.md.N = N + 1 and repeat.Every cited snippet must come from a real retrieval that iteration — never fabricated. When a lit tool
returns {"error","fallback"}, fall back to WebSearch/WebFetch; never invent a paper.
<sandbox_root>/ledger.tsv, tab-separated, never commas in free text:
iter grade pass soundness contribution evidence_quality top_fix revision_summary
1 58.0 no 3 2 4 add MM-GBSA re-scoring baseline (no revision)
2 71.0 no 4 3 4 add head-to-head vs [C2] pipeline added re-scoring + scoped affinity claim
3 82.0 yes 4 4 4 - reframed contribution around integration + new benchmarkThe matching scholareval.json and verdict.json for each iteration live in iter<N>/. Report the
best-grade iteration when stopping on budget/plateau, not necessarily the last. Leave ledger.tsv,
iter*/, and literature/ untracked.
evidence entry comes from a real <lit>/WebFetch
result retrieved that iteration, verbatim; the evidence gate exists to catch fabrication.rubrics/rubric.md, so the passing threshold stays
meaningful across iterations.<intent> — the Reviser may strengthen but never replace the core research question or
headline contribution, and never gut a central method just to lift the grade.literature-search skill is stdlib-only; never print or commit API keys
(keys.env stays gitignored at the project root). The sandbox is self-contained — no ../ escapes.The loop stops on the first of:
verdict.pass == true. Report the final proposal (iter<N>/proposal.md), its grade, and
the grade trajectory.N == <budget>. Report the best-grade iteration as the deliverable.<patience> consecutive iterations. Report the best
iteration and the standing priority-1 fixes.Always end with the deliverable proposal path, its grade and pass/fail, the grade trajectory from
ledger.tsv, and — if it did not pass — the standing blockers between this proposal and the bar.
© gaasher, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 7 other files in loops/research-proposal of gaasher/Agent-Loop-Skills.
Open the folder on GitHubat commit f1169e6
Research Proposal next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Research Proposal this skillgaasher/Agent-Loop-Skills | 174 | — | ~2.5k | Automated safety check: Pass | MIT | |
| Sciatlas Idea Evaluatezjunlp/SciAtlas | 160 | — | ~2.2k | Automated safety check: Notes | MIT | |
| Scholar EvaluationK-Dense-AI/claude-scientific-writer | 2.4k | 2 repos | ~2.9k | Automated safety check: Notes | MIT | |
| Paper NavigatorEvoScientist/EvoSkills | 475 | — | ~6.3k | Automated safety check: Notes | Apache-2.0 | |
| Aer Referee Simbrycewang-stanford/Auto-Empirical-Research-Skills | 4.5k | 1 repos | ~2.7k | Automated safety check: Pass | Custom licence | |
| Grounded Reviewgaotiexinqu/OneResearchClaw | 450 | — | ~15k | Automated safety check: Pass | MIT |
zjunlp/SciAtlas
Use only the current SciAtlas automated review workflow (reviewpipeline) to take a novice user from zero setup to a final automated review of a research idea or paper, including setup, registration…
K-Dense-AI/claude-scientific-writer
Provide qualitative-first, evidence-traceable developmental review of scholarly works and audit low-stakes research-assessment rubrics with optional local quality controls.
EvoScientist/EvoSkills
Find and read academic papers (S2 + arXiv). An agent skill from EvoScientist/EvoSkills.
brycewang-stanford/Auto-Empirical-Research-Skills
A skill your agent uses when a complete draft exists and needs an adversarial internal review before submission — simulating the AER desk screen and three referee reports with calibrated severity…
gaotiexinqu/OneResearchClaw
Review a research report draft with a structured scoring rubric, run a bounded repair loop when needed, and produce the final deliverable report.
GarethManning/education-agent-skills
Design a complete lesson study cycle from research question through collaborative planning to research lesson.
gaasher/Agent-Loop-Skills
A skill your agent uses when the user wants to evolve an ML model/program through population-based search rather than a single sequential refine loop — a generational evolution where parallel…
gaasher/Agent-Loop-Skills
A skill your agent uses when the user wants the LLM to do its own ML research: a fully-autonomous loop that hacks the training code, runs it, and keeps changes that lower a single scalar metric (e.g.
gaasher/Agent-Loop-Skills
A skill your agent uses when the user wants an autonomous ML research loop that pressure-tests competing ideas before spending compute — several research subagents each propose one architecture…
gaasher/Agent-Loop-Skills
A skill your agent uses when the user wants two approaches raced head-to-head on a single shared metric — e.g.
gaasher/Agent-Loop-Skills
A skill your agent uses when the user has a known, already-observed anomaly in their data — a metric spike or drop, an outlier, an unexpected number — and wants its root cause diagnosed, not guessed.
gaasher/Agent-Loop-Skills
A skill your agent uses when the user has concrete failing cases in code or a guardrail/classifier/filter/prompt/API they own — a red-team failure catalogue OR a CI/CD test-failure report (failing…
Categories
A skill your agent uses when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade. Research Proposal is an agent skill from gaasher/Agent-Loop-Skills. Use when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade.
Research Proposal fits situations like: tasks that involve Quizzes and assessments; tasks that involve Hypothesis generation.
Run `npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a claude-code`. Or copy the skill folder (loops/research-proposal in gaasher/Agent-Loop-Skills) into .claude/skills/research-proposal in your project. Claude Code loads it when a task matches its description.
Run `npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a codex`. Or copy the skill folder (loops/research-proposal in gaasher/Agent-Loop-Skills) into .agents/skills/research-proposal in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/research-proposal, .gemini/skills/research-proposal, .github/skills/research-proposal and .opencode/skills/research-proposal in your project.
Going by SKILL.md and its folder, Research Proposal needs credentials named S2_API_KEY. Our summary lists: Python 3; A credential in S2_API_KEY. Compatibility (from SKILL.md): Requires Python 3.9+.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Research Proposal is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 2.5k tokens (SKILL.md is roughly 9.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Research Proposal: Sciatlas Idea Evaluate (zjunlp/SciAtlas, 160 stars), Scholar Evaluation (K-Dense-AI/claude-scientific-writer, 2.4k stars), Paper Navigator (EvoScientist/EvoSkills, 475 stars) and Aer Referee Sim (brycewang-stanford/Auto-Empirical-Research-Skills, 4.5k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
gaasher (a GitHub user) maintains it in gaasher/Agent-Loop-Skills, which has 174 GitHub stars. The repository holds 21 skills in this directory. The repository was last updated on June 30, 2026.
Source: gaasher/Agent-Loop-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.