Agent skill

Research Proposal

by gaasher in gaasher/Agent-Loop-Skills

A skill your agent uses when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade.

MITAuto-check passedEducation

Install Research Proposal

skills CLI
$ npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install gaasher/Agent-Loop-Skills research-proposal --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/gaasher/Agent-Loop-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/loops/research-proposal .claude/skills/research-proposal && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
research-proposal
GitHub stars
174
Token cost
~2.5k tokens
SKILL.md length
1,071 words
Files
8
Skills in repo
21
Repo updated
First seen
Licence
MIT

At a glance

A skill your agent uses when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade.

  • Tasks that involve Quizzes and assessments
  • SKILL.md covers When to use, Setup, The loop and Ledger, plus 2 more sections
  • Needs S2_API_KEY
  • Tasks that involve Hypothesis generation

What it does

Research Proposal is an agent skill from gaasher/Agent-Loop-Skills. Use when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade. ScholarEval grades the proposal against the literature (Soundness + Contribution), a Judge scores that feedback 0-100 on a fixed rubric, and a Reviser rewrites the proposal to fix the worst points without diluting the research question; loops until the grade passes or the budget is hit. Not for generating a proposal from scratch, and not for…

Its SKILL.md is about 2.5k tokens, which your agent loads only when the skill is triggered. The skill folder holds 11 other files (for example `examples/run.example.yaml`, `roles/Judge.md` and `roles/Reviser.md`). Compatibility notes: Requires Python 3.9+

It sits in Education, covering Quizzes and assessments and Hypothesis generation. The repository describes itself as: Loop until it's better — drop-in agentic loops (autoresearch, scientific writing, data analysis, code/SQL/prompt optimization, red-teaming) as open-standard Agent Skills… The licence is MIT.

When your agent uses it

  • Tasks that involve Quizzes and assessments
  • Tasks that involve Hypothesis generation

Example prompts

  • “/research-proposal”

Requirements

  • Python 3
  • A credential in S2_API_KEY
  • Compatibility (from SKILL.md): Requires Python 3.9+

What it can do on your machine

Read from SKILL.md and the folder at commit f1169e6. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names these keys or tokens, usually read from environment variables:

    • S2_API_KEY

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

  • Compatibility

    Requires Python 3.9+

    From compatibility in the SKILL.md frontmatter.

Context cost

Research Proposal loads about 2.5k tokens when it runs. Until then it costs about 142 tokens; SKILL.md has 1,071 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~142
When it runs · the whole SKILL.md, loaded when a task matches
~2.5k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from gaasher/Agent-Loop-Skills at commit f1169e6, republished under its MIT licence (© gaasher). 1,071 words, ~2,460 tokens.

Download SKILL.mdSave it as .claude/skills/research-proposal/SKILL.md (or your agent's skills folder). This skill also uses 7 other files; get the full folder from GitHub.
name
research-proposal
description
Use when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade. ScholarEval grades the proposal against the literature (Soundness + Contribution), a Judge scores that feedback 0-100 on a fixed rubric, and a Reviser rewrites the proposal to fix the worst points without diluting the research question; loops until the grade passes or the budget is hit. Not for generating a proposal from scratch, and not for running a literature survey on its own.
compatibility
Requires Python 3.9+
metadata.version
0.1.0

Research Proposal Loop

The artifact is a research proposal; the feedback signal is ScholarEval (literature-grounded Soundness + Contribution) turned into a 0-100 grade by a Judge against the fixed rubric.md. Each iteration evaluates → grades → revises until the grade clears <pass_threshold> or the budget runs out.

North star. Clearing the threshold is the stopping condition, not the goal. The goal is the strongest, most novel, genuinely publishable version the proposal can honestly become — every revision should ask "does this make the work more significant and more novel?", not just "does this patch a flaw?". This is grounded ambition: the lift comes from better-justified methods, a sharper-but-defensible novelty claim, and stronger baselines, all backed by real retrieved evidence. Overclaiming lowers the grade (evidence gate + Contribution axis); it never raises it.

The cast (all in this folder):

  • roles/ScholarEval.md — the two-module literature-grounded evaluator; emits scholareval.json.
  • roles/Judge.md — grades the feedback → 0-100 + ranked fixes; emits verdict.json (decides pass).
  • roles/Reviser.md — rewrites the proposal to address the fixes (guards the research intent).
  • rubrics/rubric.md — the fixed grading rubric (the Judge never edits it).
  • schemas/scholareval.schema.json, schemas/verdict.schema.json — the two validated outputs.

Spawn-or-degrade. On Claude Code, spawn ScholarEval / Reviser as real Agent subagents; otherwise adopt each role inline. You are the orchestrator and the Judge.

When to use

Use when a written proposal exists and the user wants it pushed past a quality bar with literature-grounded critique. Default: run the full evaluate→grade→revise loop below. Escape hatch: if the user only wants the critique (no rewriting), run one ScholarEval + Judge pass and stop. Not for writing a proposal from a blank page, and not for a standalone literature survey.

Setup

Resolve bindings interactively. If loop.run.yaml exists in the working dir, load it and skip to the loop. Otherwise: on Claude Code (the AskUserQuestion tool is available) infer a likely value for each binding and present it as the recommended option; on other hosts ask each as a quoted plain-text prompt. Then write loop.run.yaml (format: examples/run.example.yaml) and confirm every value, <intent>, and the live/degraded literature tier before creating any other files.

bindingmeaningdefaulthow to infer
<proposal_path>file with problem + methodology + planned experiments—scan for a likely .md/.txt/.pdf; if only prose is pasted, save it to <sandbox_root>/iter1/proposal.md
<intent>core research question + headline contribution, 2-3 sentences — frozen; the Reviser may never change it—read the proposal, extract it, have the user confirm
<pass_threshold>grade (0-100) the proposal must reach to pass75a solid, well-grounded proposal without demanding perfection
<budget>max iterations6—
<patience>stop after this many consecutive no-improvement iterations2—
<eval_scale>how much literature ScholarEval pulls per iteration (low/medium/high, see below)medium—
grade_weightssoundness · contribution · evidence_quality (must sum to 1; frozen for the run)0.45 · 0.35 · 0.20rubric.md; recommend default
<sandbox_root>where snapshots, ledger, and lit cache live./sandbox—

Evaluation depth dial (<eval_scale> caps per iteration — methods · dimensions examined · queries each · papers read full-text):

presetmethods · dimsqueries eachfulltext readseffort
low2 · 210 (snippet/abstract only)low
medium (recommended)4 · 322medium
high6 · 535high

Literature toolchain. Paper search goes through the sibling literature-search skill — resolve <lit_skill_dir> (it installs as a sibling, e.g. ~/.claude/skills/literature-search/), <lit_py> = python3, and <lit> = <lit_skill_dir>/tools/lit_search.py; append --cache-dir <sandbox_root>/literature/.cache after a subcommand to reuse the cache. Confirm <lit> --help works at setup; if the skill is absent, tell the user and either install it (copy the repo's loops/literature-search folder into ~/.claude/skills/) or degrade all retrieval to WebSearch/WebFetch (no ranked snippets or citation-graph expansion). The keyless S2 + arXiv core (search/snippet/cite/fulltext) needs no setup; a free S2_API_KEY makes snippet+cite (ScholarEval's two defining moves) reliable.

API key (optional, never block). The literature-search skill owns the key convention: run <lit> keys --init, then have the user fill the printed keys.env themselves and never paste secrets into chat. Re-run <lit> keys to confirm presence and record the tier in loop.run.yaml (literature_tiers, presence only). A missing key just degrades to the keyless pool → WebSearch.

Initialise the sandbox once bindings are confirmed:

<sandbox_root>/
├── loop.run.yaml        ← resolved bindings + <intent> + grade_weights + literature_tiers
├── ledger.tsv           ← header only (see Ledger)
├── literature/.cache/   ← lit_search on-disk cache
└── iter1/proposal.md    ← the input proposal (the baseline)
Show full SKILL.md (418 more words)Show less

The loop

<N> starts at 1; iteration 1 evaluates the unmodified proposal (the baseline grade — no revision before it). Re-evaluate fresh every iteration: the grade comes only from a new ScholarEval pass on the revised proposal, never carried over.

Copy this checklist and tick items off:

  • Evaluate — run roles/ScholarEval.md (spawn-or-degrade) on iter<N>/proposal.md with the <eval_scale> caps and <lit>; it writes iter<N>/scholareval.json (validates against schemas/scholareval.schema.json).
  • Grade — as the Judge (roles/Judge.md) apply rubrics/rubric.md to scholareval.json: evidence gate → 0-5 per axis → weighted grade → hard gates → pass + ranked fixes; write iter<N>/verdict.json (validates against schemas/verdict.schema.json).
  • Log — append one ledger.tsv row (see Ledger).
  • Stop check — verdict.pass == true, or N == <budget>, or grade flat for <patience> iterations → stop (see Stops).
  • Revise — run roles/Reviser.md (spawn-or-degrade) with verdict.json, scholareval.json, <intent>, <lit>, and a small revision search budget (≈<eval_scale> searches + a couple of reads); it applies one focused fix batch and writes iter<N+1>/proposal.md + iter<N+1>/revision_notes.md.
  • N = N + 1 and repeat.

Every cited snippet must come from a real retrieval that iteration — never fabricated. When a lit tool returns {"error","fallback"}, fall back to WebSearch/WebFetch; never invent a paper.

Ledger

<sandbox_root>/ledger.tsv, tab-separated, never commas in free text:

iter	grade	pass	soundness	contribution	evidence_quality	top_fix	revision_summary
1	58.0	no	3	2	4	add MM-GBSA re-scoring	baseline (no revision)
2	71.0	no	4	3	4	add head-to-head vs [C2] pipeline	added re-scoring + scoped affinity claim
3	82.0	yes	4	4	4	-	reframed contribution around integration + new benchmark

The matching scholareval.json and verdict.json for each iteration live in iter<N>/. Report the best-grade iteration when stopping on budget/plateau, not necessarily the last. Leave ledger.tsv, iter*/, and literature/ untracked.

Constraints

  • Never fabricate citations or snippets — every evidence entry comes from a real <lit>/WebFetch result retrieved that iteration, verbatim; the evidence gate exists to catch fabrication.
  • The rubric is fixed — the Judge never edits rubrics/rubric.md, so the passing threshold stays meaningful across iterations.
  • Protect <intent> — the Reviser may strengthen but never replace the core research question or headline contribution, and never gut a central method just to lift the grade.
  • Grade through evidence, not prose — eloquence earns nothing; grounded support and surviving novelty earn the score.
  • One focused revision batch per iteration, so each grade move is attributable.
  • No installs — the sibling literature-search skill is stdlib-only; never print or commit API keys (keys.env stays gitignored at the project root). The sandbox is self-contained — no ../ escapes.

Stops

The loop stops on the first of:

  • Pass — verdict.pass == true. Report the final proposal (iter<N>/proposal.md), its grade, and the grade trajectory.
  • Budget — N == <budget>. Report the best-grade iteration as the deliverable.
  • Plateau — grade hasn't improved for <patience> consecutive iterations. Report the best iteration and the standing priority-1 fixes.

Always end with the deliverable proposal path, its grade and pass/fail, the grade trajectory from ledger.tsv, and — if it did not pass — the standing blockers between this proposal and the bar.

© gaasher, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

SKILL.md and 7 other files in loops/research-proposal of gaasher/Agent-Loop-Skills.

  • SKILL.md
  • examples/run.example.yaml
  • roles/Judge.md
  • roles/Reviser.md
  • roles/ScholarEval.md
  • rubrics/rubric.md
  • schemas/scholareval.schema.json
  • schemas/verdict.schema.json

Open the folder on GitHubat commit f1169e6

Compare with similar skills

Research Proposal next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Research Proposal compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Research Proposal this skillgaasher/Agent-Loop-Skills174—~2.5kAutomated safety check: PassMIT
Sciatlas Idea Evaluatezjunlp/SciAtlas160—~2.2kAutomated safety check: NotesMIT
Scholar EvaluationK-Dense-AI/claude-scientific-writer2.4k2 repos~2.9kAutomated safety check: NotesMIT
Paper NavigatorEvoScientist/EvoSkills475—~6.3kAutomated safety check: NotesApache-2.0
Aer Referee Simbrycewang-stanford/Auto-Empirical-Research-Skills4.5k1 repos~2.7kAutomated safety check: PassCustom licence
Grounded Reviewgaotiexinqu/OneResearchClaw450—~15kAutomated safety check: PassMIT

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Questions about Research Proposal

What does Research Proposal do?

A skill your agent uses when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade. Research Proposal is an agent skill from gaasher/Agent-Loop-Skills. Use when the user has a research proposal (problem + proposed methodology + planned experiments) and wants it iteratively strengthened until it clears a passing grade.

When should I use Research Proposal?

Research Proposal fits situations like: tasks that involve Quizzes and assessments; tasks that involve Hypothesis generation.

How do I install Research Proposal in Claude Code?

Run `npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a claude-code`. Or copy the skill folder (loops/research-proposal in gaasher/Agent-Loop-Skills) into .claude/skills/research-proposal in your project. Claude Code loads it when a task matches its description.

How do I install Research Proposal in Codex?

Run `npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a codex`. Or copy the skill folder (loops/research-proposal in gaasher/Agent-Loop-Skills) into .agents/skills/research-proposal in your project. Codex loads it when a task matches its description.

Can I use Research Proposal in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add gaasher/Agent-Loop-Skills --skill research-proposal -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/research-proposal, .gemini/skills/research-proposal, .github/skills/research-proposal and .opencode/skills/research-proposal in your project.

What does Research Proposal need to run?

Going by SKILL.md and its folder, Research Proposal needs credentials named S2_API_KEY. Our summary lists: Python 3; A credential in S2_API_KEY. Compatibility (from SKILL.md): Requires Python 3.9+.

Does Research Proposal access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Research Proposal safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Research Proposal use?

Research Proposal is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Research Proposal use?

About 2.5k tokens (SKILL.md is roughly 9.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Research Proposal?

Skills that share tags, products or a category with Research Proposal: Sciatlas Idea Evaluate (zjunlp/SciAtlas, 160 stars), Scholar Evaluation (K-Dense-AI/claude-scientific-writer, 2.4k stars), Paper Navigator (EvoScientist/EvoSkills, 475 stars) and Aer Referee Sim (brycewang-stanford/Auto-Empirical-Research-Skills, 4.5k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Research Proposal?

gaasher (a GitHub user) maintains it in gaasher/Agent-Loop-Skills, which has 174 GitHub stars. The repository holds 21 skills in this directory. The repository was last updated on June 30, 2026.

Source: gaasher/Agent-Loop-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.